mRNA_L-elsbetiae_contig757.16470.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig757.16470.1
Unique NamemRNA_L-elsbetiae_contig757.16470.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig757.16470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig757contigL-elsbetiae_contig757:21320..21997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size678
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig757.16470.1prot_L-elsbetiae_contig757.16470.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig757 21351..21914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.7370007-UTR-L-elsbetiae_contig757:21319..213501622816840.7370007-UTR-L-elsbetiae_contig757:21319..21350Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 21320..21350 +
1691683853.7795272-UTR-L-elsbetiae_contig757:21319..213501691683853.7795272-UTR-L-elsbetiae_contig757:21319..21350Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 21320..21350 +
1622816840.761535-UTR-L-elsbetiae_contig757:21914..219971622816840.761535-UTR-L-elsbetiae_contig757:21914..21997Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 21915..21997 +
1691683853.801344-UTR-L-elsbetiae_contig757:21914..219971691683853.801344-UTR-L-elsbetiae_contig757:21914..21997Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 21915..21997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.7497263-CDS-L-elsbetiae_contig757:21350..219141622816840.7497263-CDS-L-elsbetiae_contig757:21350..21914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig757 21351..21914 +
1691683853.790105-CDS-L-elsbetiae_contig757:21350..219141691683853.790105-CDS-L-elsbetiae_contig757:21350..21914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig757 21351..21914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig757.16470.1

>prot_L-elsbetiae_contig757.16470.1 ID=prot_L-elsbetiae_contig757.16470.1|Name=mRNA_L-elsbetiae_contig757.16470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MEHRSWIHLCSSGRSRRAKGLATHLAKKNRRRCIMAASQGHMADALALFA
VGADVSRRCDQFITPVMHLATPEGNLEVLRAVIEHGADVDATTRSSPFSS
VVCVVQPDGRHRFSRRGRGQHANTGPWWLHTSSSCLQPAQTRSLAWPFGA
WCKRQPAGQFPPNTVRCLDSLSIAATKAGALRSYVCT*
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mRNA from alignment at L-elsbetiae_contig757:21320..21997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig757.16470.1 ID=mRNA_L-elsbetiae_contig757.16470.1|Name=mRNA_L-elsbetiae_contig757.16470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig757:21320..21997+ (Laminarionema elsbetiae ELsaHSoW15)
AACAAGGGCCTCGCGCAGAGGCTGGTGAGAGATGGAGCACAGATCGTGGA
TTCACTTATGTTCATCAGGCCGTTCGAGGCGGGCAAAGGGGCTGGCGACG
CACTTGGCTAAAAAGAATCGACGCCGCTGCATCATGGCAGCCTCTCAGGG
CCACATGGCTGACGCACTGGCTCTCTTTGCTGTCGGCGCAGACGTCAGCC
GCCGATGCGACCAATTCATAACTCCAGTGATGCACTTGGCGACTCCGGAG
GGGAATCTTGAGGTCTTGAGGGCCGTGATCGAGCACGGAGCGGACGTGGA
CGCAACAACGCGCAGCTCTCCATTCAGCAGCGTGGTATGTGTGGTACAAC
CTGACGGACGCCATCGATTTTCTCGTCGGGGCCGGGGCCAACACGCAAAC
ACGGGACCGTGGTGGCTGCACACCTCTTCATCATGCCTCCAGCCAGCTCA
GACACGAAGCCTTGCGTGGCCTTTTGGGGCATGGTGCAAACGTCAACCCG
CAGGACAATTTCCTCCAAACACCGTTCGTTGTTTAGATAGTCTATCTATA
GCAGCAACTAAAGCCGGAGCACTCAGGAGCTATGTATGTACATAGGAGTT
GGTAGAGTTCCTACTGAGGAGGACAAGGACGAGGCAACCGATGGCGTCGA
TGGCAGCAAAGCGGTGGATATGATCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig757:21320..21997+

>mRNA_L-elsbetiae_contig757.16470.1 ID=mRNA_L-elsbetiae_contig757.16470.1|Name=mRNA_L-elsbetiae_contig757.16470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig757:21320..21997+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCACAGATCGTGGATTCACTTATGTTCATCAGGCCGTTCGAGGCG
GGCAAAGGGGCTGGCGACGCACTTGGCTAAAAAGAATCGACGCCGCTGCA
TCATGGCAGCCTCTCAGGGCCACATGGCTGACGCACTGGCTCTCTTTGCT
GTCGGCGCAGACGTCAGCCGCCGATGCGACCAATTCATAACTCCAGTGAT
GCACTTGGCGACTCCGGAGGGGAATCTTGAGGTCTTGAGGGCCGTGATCG
AGCACGGAGCGGACGTGGACGCAACAACGCGCAGCTCTCCATTCAGCAGC
GTGGTATGTGTGGTACAACCTGACGGACGCCATCGATTTTCTCGTCGGGG
CCGGGGCCAACACGCAAACACGGGACCGTGGTGGCTGCACACCTCTTCAT
CATGCCTCCAGCCAGCTCAGACACGAAGCCTTGCGTGGCCTTTTGGGGCA
TGGTGCAAACGTCAACCCGCAGGACAATTTCCTCCAAACACCGTTCGTTG
TTTAGATAGTCTATCTATAGCAGCAACTAAAGCCGGAGCACTCAGGAGCT
ATGTATGTACATAGATGGAGCACAGATCGTGGATTCACTTATGTTCATCA
GGCCGTTCGAGGCGGGCAAAGGGGCTGGCGACGCACTTGGCTAAAAAGAA
TCGACGCCGCTGCATCATGGCAGCCTCTCAGGGCCACATGGCTGACGCAC
TGGCTCTCTTTGCTGTCGGCGCAGACGTCAGCCGCCGATGCGACCAATTC
ATAACTCCAGTGATGCACTTGGCGACTCCGGAGGGGAATCTTGAGGTCTT
GAGGGCCGTGATCGAGCACGGAGCGGACGTGGACGCAACAACGCGCAGCT
CTCCATTCAGCAGCGTGGTATGTGTGGTACAACCTGACGGACGCCATCGA
TTTTCTCGTCGGGGCCGGGGCCAACACGCAAACACGGGACCGTGGTGGCT
GCACACCTCTTCATCATGCCTCCAGCCAGCTCAGACACGAAGCCTTGCGT
GGCCTTTTGGGGCATGGTGCAAACGTCAACCCGCAGGACAATTTCCTCCA
AACACCGTTCGTTGTTTAGATAGTCTATCTATAGCAGCAACTAAAGCCGG
AGCACTCAGGAGCTATGTATGTACATAG
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