mRNA_L-elsbetiae_contig757.16469.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig757.16469.1
Unique NamemRNA_L-elsbetiae_contig757.16469.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: D7FUR8_ECTSI (Nitrate high affinity transporter n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FUR8_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.290e-28
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:  159 SVGVQMSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPRVGFRIIGASEVGLSCTSFLLKIRGYATCFTAPQGEPDPIAEM 443
            SVGVQM+E T  G+VPYIVP ATGAV GIVGAGGN GAV+ G  FRF     R  FRII A  VGLSC + LLKIRGYATCF APQGEPD IA++
Sbjct:  363 SVGVQMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRFAGRSERAVFRIIAAFVVGLSCLTPLLKIRGYATCFAAPQGEPDSIADI 457
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: D7FUS1_ECTSI (Nitrate/nitrite transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUS1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.790e-28
Identity = 66/95 (69.47%), Postives = 73/95 (76.84%), Query Frame = 3 
Query:  159 SVGVQMSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPRVGFRIIGASEVGLSCTSFLLKIRGYATCFTAPQGEPDPIAEM 443
            SVGVQMSE T  G+VPYIVP ATGAV GIVGAGGN GAV+ G  FRFG    R  FRII A  V LSCT+ L+KIRGYA+CF AP+GEPD IAE+
Sbjct:  363 SVGVQMSEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRFGPTSERSVFRIIAAIVVALSCTTPLMKIRGYASCFGAPKGEPDSIAEI 457
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: A0A836CM93_9STRA (Nitrate high affinity transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM93_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.740e-12
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 3 
Query:  162 VGVQMSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPRVGFRIIGASEVGLSCTSFLLKIRGYATCFT-APQGEPDPI 434
            VGVQMSE +  G+VP + P ATGAV GIVGAGGN+GA+  G  FRFG   P   F ++G   +G +  + LL+++G+   FT A   EP  I
Sbjct:  371 VGVQMSEGSTFGIVPSVCPEATGAVSGIVGAGGNLGAIAFGLLFRFGPSAPETCFLLLGFIVLGCAALTPLLRLKGHDGMFTRAKVEEPGAI 462
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: A0A812ST29_9DINO (Nitrate/nitrite transporter n=2 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812ST29_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 7.960e-12
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  159 SVGVQMSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPR-----VGFRIIGASEVGLSCTSFLLKIRGYATCFTAPQGEPDPI 434
            S+GVQM+E    G+VPY+ P ATGAV G+VGAGGN+GAV  G  FRFG  +       +GF +I ++ +GL    F+L I+G+  C T  +GEP+ +
Sbjct:  387 SLGVQMAEGCTFGIVPYVKPTATGAVSGVVGAGGNVGAVCWGLMFRFGPSEADDVLFILGFIVIASAVMGL----FVL-IQGHDGCITKAKGEPESL 478
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: A0A812SSL6_9DINO (Nitrate/nitrite transporter n=3 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SSL6_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 8.540e-12
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  159 SVGVQMSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPR-----VGFRIIGASEVGLSCTSFLLKIRGYATCFTAPQGEPDPI 434
            S+GVQM+E    G+VPY+ P ATGAV G+VGAGGN+GAV  G  FRFG  +       +GF +I ++ +GL    F+L I+G+  C T  +GEP+ +
Sbjct:  450 SLGVQMAEGCTFGIVPYVKPTATGAVSGVVGAGGNVGAVCWGLMFRFGPSEADDVLFILGFIVIASAVMGL----FVL-IQGHDGCITKAKGEPESL 541
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: A0A812SYP8_9DINO (NRT2.5 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SYP8_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 9.200e-12
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  159 SVGVQMSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPR-----VGFRIIGASEVGLSCTSFLLKIRGYATCFTAPQGEPDPI 434
            S+GVQM+E    G+VPY+ P ATGAV G+VGAGGN+GAV  G  FRFG  +       +GF +I ++ +GL    F+L I+G+  C T  +GEP+ +
Sbjct:  557 SLGVQMAEGCTFGIVPYVKPTATGAVSGVVGAGGNVGAVCWGLIFRFGPSEADDVLFILGFIVIASAVMGL----FVL-IQGHDGCITKAKGEPESL 648
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: A0A812T2A0_9DINO (NRT2.5 protein n=3 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812T2A0_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 1.070e-11
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  159 SVGVQMSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPR-----VGFRIIGASEVGLSCTSFLLKIRGYATCFTAPQGEPDPI 434
            S+GVQM+E    G+VPY+ P ATGAV G+VGAGGN+GAV  G  FRFG  +       +GF +I ++ +GL    F+L I+G+  C T  +GEP+ +
Sbjct: 1118 SLGVQMAEGCTFGIVPYVKPTATGAVSGVVGAGGNVGAVCWGLIFRFGPSEADDVLFILGFIVIASAVMGL----FVL-IQGHDGCITKAKGEPESL 1209
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: A0A835YQD5_9STRA (Nitrate high affinity transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.170e-10
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 
Query:  198 VVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPRVGFRIIGASEVGLSCTSFLLKIRGYATCFTAPQGE 422
            +VPY+ P ATGAV G+ GAGGN+GAV     FRFG   P + FRI+    +G +CT+ L+ IRGY T FT  + E
Sbjct:  386 IVPYVAPEATGAVSGMAGAGGNVGAVCWSLIFRFG-PAPNLCFRILSYIILGAACTAPLINIRGYDTLFTKAKDE 459
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: A0A835YTD5_9STRA (Nitrate high affinity transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.950e-10
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 3 
Query:  198 VVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPRVGFRIIGASEVGLSCTSFLLKIRGYATCFTAPQGE 422
            +VPY+ P ATGAV G+ GAGGN+GAV     FRFG   P + FRI+    +G +CT  L+ IRGY T FT  + E
Sbjct:  384 IVPYVAPEATGAVSGMTGAGGNVGAVCWSLIFRFG-PAPNLCFRILSYIVLGAACTVPLINIRGYDTLFTKAKDE 457
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BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Match: A0A7S2N277_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N277_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.110e-9
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3 
Query:  159 SVGVQMSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPRVGFRIIGASEVGLSCTSFLLKIRGYA 395
            SV VQ +E T  G+VPY+ P  TG++ GIVGAGGN GAV  G  FR  + D +  F ++G S +G S  S L++I+G++
Sbjct:   63 SVFVQAAEGTSYGIVPYVNPPCTGSIAGIVGAGGNTGAVAFGMGFR--QLDYKDAFTVMGCSIIGSSVLSILIRIKGHS 139
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig757.16469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR8_ECTSI1.290e-2869.47Nitrate high affinity transporter n=4 Tax=Ectocarp... [more]
D7FUS1_ECTSI1.790e-2869.47Nitrate/nitrite transporter n=2 Tax=Ectocarpus Tax... [more]
A0A836CM93_9STRA5.740e-1247.83Nitrate high affinity transporter n=1 Tax=Tribonem... [more]
A0A812ST29_9DINO7.960e-1246.39Nitrate/nitrite transporter n=2 Tax=Symbiodinium n... [more]
A0A812SSL6_9DINO8.540e-1246.39Nitrate/nitrite transporter n=3 Tax=Symbiodinium n... [more]
A0A812SYP8_9DINO9.200e-1246.39NRT2.5 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A812T2A0_9DINO1.070e-1146.39NRT2.5 protein n=3 Tax=Symbiodinium natans TaxID=8... [more]
A0A835YQD5_9STRA2.170e-1050.67Nitrate high affinity transporter n=2 Tax=Tribonem... [more]
A0A835YTD5_9STRA3.950e-1050.67Nitrate high affinity transporter n=1 Tax=Tribonem... [more]
A0A7S2N277_9STRA4.110e-946.84Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig757contigL-elsbetiae_contig757:7902..8666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue6.2e-24
Seed eggNOG ortholog2880.D7FUR8
Preferred nameNRT2.2
KEGG koko:K02575
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
GOsGO:0000325,GO:0001101,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007275,GO:0008150,GO:0008509,GO:0009507,GO:0009536,GO:0009628,GO:0009705,GO:0009791,GO:0009987,GO:0010035,GO:0010167,GO:0015075,GO:0015103,GO:0015112,GO:0015267,GO:0015291,GO:0015318,GO:0015513,GO:0015698,GO:0015706,GO:0015707,GO:0016020,GO:0022622,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022857,GO:0031090,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071229,GO:0071241,GO:0071249,GO:0071705,GO:0071944,GO:0080167,GO:0090696,GO:0098588,GO:0098656,GO:0098805,GO:0099402,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1990351
EggNOG free text desc.cellular response to nitrate
EggNOG OGs2QPIC@2759,COG2223@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size765
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig757.16469.1prot_L-elsbetiae_contig757.16469.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig757 8075..8464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.902479-UTR-L-elsbetiae_contig757:7901..80741622816840.902479-UTR-L-elsbetiae_contig757:7901..8074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 7902..8074 +
1691683853.8980272-UTR-L-elsbetiae_contig757:7901..80741691683853.8980272-UTR-L-elsbetiae_contig757:7901..8074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 7902..8074 +
1622816840.9291902-UTR-L-elsbetiae_contig757:8464..86661622816840.9291902-UTR-L-elsbetiae_contig757:8464..8666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 8465..8666 +
1691683853.9178014-UTR-L-elsbetiae_contig757:8464..86661691683853.9178014-UTR-L-elsbetiae_contig757:8464..8666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 8465..8666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.9136572-CDS-L-elsbetiae_contig757:8074..84641622816840.9136572-CDS-L-elsbetiae_contig757:8074..8464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig757 8075..8464 +
1691683853.9088743-CDS-L-elsbetiae_contig757:8074..84641691683853.9088743-CDS-L-elsbetiae_contig757:8074..8464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig757 8075..8464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig757.16469.1

>prot_L-elsbetiae_contig757.16469.1 ID=prot_L-elsbetiae_contig757.16469.1|Name=mRNA_L-elsbetiae_contig757.16469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MSEVTLNGVVPYIVPGATGAVWGIVGAGGNIGAVVRGRTFRFGRDDPRVG
FRIIGASEVGLSCTSFLLKIRGYATCFTAPQGEPDPIAEMLYPRSLRLQF
LMQRTGLCRRVGVHTVVGLGVLGGTLLIA*
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mRNA from alignment at L-elsbetiae_contig757:7902..8666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig757.16469.1 ID=mRNA_L-elsbetiae_contig757.16469.1|Name=mRNA_L-elsbetiae_contig757.16469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=765bp|location=Sequence derived from alignment at L-elsbetiae_contig757:7902..8666+ (Laminarionema elsbetiae ELsaHSoW15)
GACTTCCCGTATACCAAGTTTGGTGGCGGCGTGACCAGCATGCGCGAATC
CTTCTTCGTCCGGTGGTCTGCCCTCCGGTGGGTGGGAAGGCTGCTTCCTG
TTCCTCTTCCTCTTCATGGACGAGCCAGGCGCGGTCATCCCGGTCCTCAC
CCTCTTCCTCCGTGGGCGTCCAGATGTCGGAGGTAACCTTGAACGGCGTC
GTGCCGTACATCGTGCCGGGCGCGACGGGGGCCGTGTGGGGCATCGTTGG
CGCCGGCGGTAACATCGGCGCCGTGGTGAGGGGTCGCACCTTCCGCTTCG
GCCGCGATGACCCGCGAGTTGGGTTCCGTATCATCGGGGCGTCCGAGGTT
GGCTTGTCGTGCACCAGTTTTCTCCTCAAGATCCGTGGGTACGCAACGTG
CTTCACGGCGCCTCAGGGAGAGCCGGACCCCATCGCGGAGATGTTATATC
CCCGGTCGCTACGTCTTCAGTTCCTGATGCAGCGCACGGGCCTTTGCAGG
CGGGTCGGGGTACACACCGTAGTGGGGTTGGGAGTGTTGGGAGGGACACT
CTTGATCGCATAGTGTTCGTGTTTCGCACGTAGTTACACGCACGCGTTCG
TACTTTCAGCCTCAGCGTTTCAGGCGTGTGTACCTCACGTTCGCGTTTCG
TTTATTGCGAAGGACAGAAGTCAGCCACTTGGAATGAGGTTGATGTATTG
TAGGTATTTCGATATTTTGATATTTCCTTTAAATACCATGGCATTTTTTT
TTTTGTTCCACGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig757:7902..8666+

>mRNA_L-elsbetiae_contig757.16469.1 ID=mRNA_L-elsbetiae_contig757.16469.1|Name=mRNA_L-elsbetiae_contig757.16469.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig757:7902..8666+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGAGGTAACCTTGAACGGCGTCGTGCCGTACATCGTGCCGGGCGC
GACGGGGGCCGTGTGGGGCATCGTTGGCGCCGGCGGTAACATCGGCGCCG
TGGTGAGGGGTCGCACCTTCCGCTTCGGCCGCGATGACCCGCGAGTTGGG
TTCCGTATCATCGGGGCGTCCGAGGTTGGCTTGTCGTGCACCAGTTTTCT
CCTCAAGATCCGTGGGTACGCAACGTGCTTCACGGCGCCTCAGGGAGAGC
CGGACCCCATCGCGGAGATGTTATATCCCCGGTCGCTACGTCTTCAGTTC
CTGATGCAGCGCACGGGCCTTTGCAGGCGGGTCGGGGTACACACCGTAGT
GGGGTTGGGAGTGTTGGGAGGGACACTCTTGATCGCATAGATGTCGGAGG
TAACCTTGAACGGCGTCGTGCCGTACATCGTGCCGGGCGCGACGGGGGCC
GTGTGGGGCATCGTTGGCGCCGGCGGTAACATCGGCGCCGTGGTGAGGGG
TCGCACCTTCCGCTTCGGCCGCGATGACCCGCGAGTTGGGTTCCGTATCA
TCGGGGCGTCCGAGGTTGGCTTGTCGTGCACCAGTTTTCTCCTCAAGATC
CGTGGGTACGCAACGTGCTTCACGGCGCCTCAGGGAGAGCCGGACCCCAT
CGCGGAGATGTTATATCCCCGGTCGCTACGTCTTCAGTTCCTGATGCAGC
GCACGGGCCTTTGCAGGCGGGTCGGGGTACACACCGTAGTGGGGTTGGGA
GTGTTGGGAGGGACACTCTTGATCGCATAG
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