mRNA_L-elsbetiae_contig757.16468.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig757.16468.1
Unique NamemRNA_L-elsbetiae_contig757.16468.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: D7FUR8_ECTSI (Nitrate high affinity transporter n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FUR8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.590e-15
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:    2 GATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQV 121
            GATFVCTQFWSSQIFAKEFVGTANAT+GGWGNLGGGVTQ+
Sbjct:  138 GATFVCTQFWSSQIFAKEFVGTANATTGGWGNLGGGVTQI 177
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: D7FUS1_ECTSI (Nitrate/nitrite transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUS1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.460e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:    2 GATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQV 121
            GATFVCTQ+W+SQ+FAKEFVGTANATS GWGNLGGGVTQ+
Sbjct:  138 GATFVCTQYWTSQVFAKEFVGTANATSAGWGNLGGGVTQI 177
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: A0A7S1FLI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FLI3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.220e-11
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:    2 GATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQV 121
            G TFV  Q+WSSQ+F KE VGTANA  GGWGNLGGGVTQ+
Sbjct:   27 GGTFVMCQYWSSQMFTKEVVGTANALVGGWGNLGGGVTQL 66
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: A0A1Y5I1L7_OSTTA (Ntr2, nitrate high-affinity transporter n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I1L7_OSTTA)

HSP 1 Score: 68.2 bits (165), Expect = 9.690e-10
Identity = 37/74 (50.00%), Postives = 44/74 (59.46%), Query Frame = 2 
Query:    5 ATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQVGLEDKYDI*SQTDVV*CFDIFRHSEVCSSLAHAYT 226
            ATFVCTQFW S +F ++ VG ANATS GWGNLGGGVTQ  +   Y I         F  +R + +   LAH  T
Sbjct:   36 ATFVCTQFWMSNMFNRKCVGLANATSAGWGNLGGGVTQFLMPGIYAICFAGCSKKAFLAWRWAYIVPGLAHVLT 109
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: A0A090M507_OSTTA (Major facilitator superfamily domain, general substrate transporter n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M507_OSTTA)

HSP 1 Score: 68.2 bits (165), Expect = 1.130e-9
Identity = 37/74 (50.00%), Postives = 44/74 (59.46%), Query Frame = 2 
Query:    5 ATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQVGLEDKYDI*SQTDVV*CFDIFRHSEVCSSLAHAYT 226
            ATFVCTQFW S +F ++ VG ANATS GWGNLGGGVTQ  +   Y I         F  +R + +   LAH  T
Sbjct:  135 ATFVCTQFWMSNMFNRKCVGLANATSAGWGNLGGGVTQFLMPGIYAICFAGCSKKAFLAWRWAYIVPGLAHVLT 208
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: A0A8J5XG44_DIALT (Uncharacterized protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XG44_DIALT)

HSP 1 Score: 67.8 bits (164), Expect = 1.520e-9
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:    2 GATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQV 121
            GATFV TQFW+S +F+K  VGTANATS GWGNLGGG TQV
Sbjct:  153 GATFVITQFWTSVMFSKNVVGTANATSAGWGNLGGGFTQV 192
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: A0A6U3Y6P5_9STRA (Nitrate/nitrite transporter n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3Y6P5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.530e-9
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:    2 GATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQV 121
            G+TFVC QFW+S++F KE  GTANA  GGWGNLGGGVTQ+
Sbjct:  151 GSTFVCCQFWTSRMFTKEVAGTANALVGGWGNLGGGVTQL 190
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: A0A7S2P3R4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3R4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.010e-9
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:    2 GATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQV 121
            G+TFV  Q+WSS++F KE VGTANA  GGWGNLGGGVTQ+
Sbjct:   84 GSTFVMCQYWSSRMFTKEVVGTANALCGGWGNLGGGVTQL 123
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: A0A812TDC9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812TDC9_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 2.020e-9
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:    2 GATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQV 121
            GATFV  QFW S +FA   VGTANAT+ GWGNLGGGVTQ+
Sbjct:   67 GATFVTNQFWCSLMFAPNVVGTANATAAGWGNLGGGVTQI 106
[Close]
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Match: F0YL80_AURAN (Uncharacterized protein NRT1 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL80_AURAN)

HSP 1 Score: 67.0 bits (162), Expect = 2.730e-9
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:    2 GATFVCTQFWSSQIFAKEFVGTANATSGGWGNLGGGVTQVGLEDKY 139
            G TFV TQFW++Q+F  E VG ANATS GWGNLGGGVTQ+ +   Y
Sbjct:  161 GGTFVVTQFWTTQLFCHEIVGVANATSAGWGNLGGGVTQLLMVSIY 206
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig757.16468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR8_ECTSI1.590e-1595.00Nitrate high affinity transporter n=4 Tax=Ectocarp... [more]
D7FUS1_ECTSI3.460e-1487.50Nitrate/nitrite transporter n=2 Tax=Ectocarpus Tax... [more]
A0A7S1FLI3_9STRA9.220e-1175.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A1Y5I1L7_OSTTA9.690e-1050.00Ntr2, nitrate high-affinity transporter n=1 Tax=Os... [more]
A0A090M507_OSTTA1.130e-950.00Major facilitator superfamily domain, general subs... [more]
A0A8J5XG44_DIALT1.520e-977.50Uncharacterized protein n=3 Tax=Diacronema lutheri... [more]
A0A6U3Y6P5_9STRA1.530e-972.50Nitrate/nitrite transporter n=1 Tax=Skeletonema ma... [more]
A0A7S2P3R4_9STRA2.010e-972.50Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A812TDC9_9DINO2.020e-972.50Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
F0YL80_AURAN2.730e-965.22Uncharacterized protein NRT1 n=1 Tax=Aureococcus a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig757contigL-elsbetiae_contig757:5283..5970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.6951332-UTR-L-elsbetiae_contig757:5282..55381622816840.6951332-UTR-L-elsbetiae_contig757:5282..5538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 5283..5538 +
1691683853.7575223-UTR-L-elsbetiae_contig757:5282..55381691683853.7575223-UTR-L-elsbetiae_contig757:5282..5538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig757 5283..5538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.7094057-CDS-L-elsbetiae_contig757:5538..59701622816840.7094057-CDS-L-elsbetiae_contig757:5538..5970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig757 5539..5970 +
1691683853.769666-CDS-L-elsbetiae_contig757:5538..59701691683853.769666-CDS-L-elsbetiae_contig757:5538..5970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig757 5539..5970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig757.16468.1prot_L-elsbetiae_contig757.16468.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig757 5539..5970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig757.16468.1

>prot_L-elsbetiae_contig757.16468.1 ID=prot_L-elsbetiae_contig757.16468.1|Name=mRNA_L-elsbetiae_contig757.16468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MVFIFLFRVCNRNNDSAAPHAPTYPLTFFFSPEIFAMKLSAAVPVKQRNG
RHLPAGVHLSLQLDIASAKGYIYQWQCTTAWIRGGSETKPERGATPAKTS
VKNLYLCRYICPKAVLNTGPTKRTQKVILVYEQTLLAWMNRLAS
back to top

mRNA from alignment at L-elsbetiae_contig757:5283..5970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig757.16468.1 ID=mRNA_L-elsbetiae_contig757.16468.1|Name=mRNA_L-elsbetiae_contig757.16468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=688bp|location=Sequence derived from alignment at L-elsbetiae_contig757:5283..5970+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGCCACGTTCGTGTGCACCCAGTTCTGGTCCTCGCAGATTTTCGCCA
AGGAGTTTGTCGGCACGGCCAACGCCACCAGCGGGGGCTGGGGAAACCTG
GGTGGCGGTGTCACGCAGGTGGGTTTAGAGGATAAATACGACATTTGAAG
CCAAACCGATGTTGTATAATGTTTTGACATCTTCCGCCACTCGGAAGTTT
GTTCCAGCCTGGCGCACGCCTACACTAACCGCTGCTCCGCAACTAACCCT
CCCCACATGGTCTTTATTTTCTTGTTCAGGGTATGTAATCGGAACAATGA
TTCCGCGGCACCACATGCCCCTACATACCCGCTCACTTTTTTTTTTTCAC
CTGAAATCTTTGCGATGAAACTATCGGCCGCGGTGCCTGTCAAACAGCGG
AACGGCCGTCATTTGCCTGCCGGGGTGCATCTTTCGTTGCAGCTTGATAT
TGCGAGCGCCAAGGGGTATATATATCAGTGGCAGTGCACAACGGCGTGGA
TTCGTGGGGGCTCCGAAACGAAACCTGAGCGAGGTGCCACGCCTGCAAAA
ACCAGTGTCAAGAATCTCTATCTATGTAGATATATTTGTCCGAAAGCAGT
CCTAAATACTGGACCGACCAAGCGCACACAAAAAGTAATCCTCGTGTACG
AACAGACGCTCCTAGCATGGATGAATCGGCTTGCCTCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig757:5283..5970+

>mRNA_L-elsbetiae_contig757.16468.1 ID=mRNA_L-elsbetiae_contig757.16468.1|Name=mRNA_L-elsbetiae_contig757.16468.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig757:5283..5970+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCTTTATTTTCTTGTTCAGGGTATGTAATCGGAACAATGATTCCGC
GGCACCACATGCCCCTACATACCCGCTCACTTTTTTTTTTTCACCTGAAA
TCTTTGCGATGAAACTATCGGCCGCGGTGCCTGTCAAACAGCGGAACGGC
CGTCATTTGCCTGCCGGGGTGCATCTTTCGTTGCAGCTTGATATTGCGAG
CGCCAAGGGGTATATATATCAGTGGCAGTGCACAACGGCGTGGATTCGTG
GGGGCTCCGAAACGAAACCTGAGCGAGGTGCCACGCCTGCAAAAACCAGT
GTCAAGAATCTCTATCTATGTAGATATATTTGTCCGAAAGCAGTCCTAAA
TACTGGACCGACCAAGCGCACACAAAAAGTAATCCTCGTGTACGAACAGA
CGCTCCTAGCATGGATGAATCGGCTTGCCTCAATGGTCTTTATTTTCTTG
TTCAGGGTATGTAATCGGAACAATGATTCCGCGGCACCACATGCCCCTAC
ATACCCGCTCACTTTTTTTTTTTCACCTGAAATCTTTGCGATGAAACTAT
CGGCCGCGGTGCCTGTCAAACAGCGGAACGGCCGTCATTTGCCTGCCGGG
GTGCATCTTTCGTTGCAGCTTGATATTGCGAGCGCCAAGGGGTATATATA
TCAGTGGCAGTGCACAACGGCGTGGATTCGTGGGGGCTCCGAAACGAAAC
CTGAGCGAGGTGCCACGCCTGCAAAAACCAGTGTCAAGAATCTCTATCTA
TGTAGATATATTTGTCCGAAAGCAGTCCTAAATACTGGACCGACCAAGCG
CACACAAAAAGTAATCCTCGTGTACGAACAGACGCTCCTAGCATGGATGA
ATCGGCTTGCCTCA
back to top