mRNA_L-elsbetiae_contig756.16457.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig756.16457.1 vs. uniprot
Match: D7G5B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B7_ECTSI) HSP 1 Score: 290 bits (742), Expect = 6.210e-84 Identity = 187/409 (45.72%), Postives = 235/409 (57.46%), Query Frame = 3 Query: 705 TADRRRTFLRHAS-THNTYTPAVADTTGGADPVAGVSNGSRRKPETSTSETRAVPAEQGHQHHNGARRSTFLTPFASHVTADGTG------------DFTPSGGNVGVAGTQEDEDTAASHAGVARAQGRARIWSFNCAVA--LAPVMFFFLVAGVLWAWPHVQVGAGRAWSTLHGFTARNPAAGKCFLHPSERDTNQAASICKKGADVVDCPDQATCGGGAILSCSFFLERKMDGSACVLTAEAEEEVDAVVQALRILTVEQQCKGNGLIMPSPKAFSARSFITLADAAAAQNRGPLSFLAGMPPGNV-GLIDLEGEAAPDFGGSEGDDALEGNSSNMGSGSERIARLSESAYNAVMLTRSWQCRARLFVWGGLMEYWPFCLGLYALGLIVVCLDCRRRKNYKRHVEV 1883 T R+ +FLRHA+ T T + A + G +++ + P+T + R P+ + A R T T A T D G D P AG D D A +G++ W+F CAV LAPV+ LV+G+L AWPHVQV AG AW G TA+ P+ KCFL P E++ +CK G + +DCPD ATCG G IL C+ + D +ACVL AEAE+E AVV+ALR LT E+ CKG GLIMP +A + SFITL DAA AQ+RGPLS LAGMPPGNV GLI+LEGE A FGG G D EG + GSG ER+ARLSESA++AVM T W+C+ARL M YW +CL +Y L + VCLD RRR +Y RHV+V Sbjct: 180 TPSRKSSFLRHANGTEGTDSATAASASDGPS----LNSDNLGGPKT-RGQARRGPSFLDRER---AGRDTVATAGAEGRTPDMKGTRGQKDKSKSKVDSVPQPAQATDAGADADGDDARPR------RGKSLEWTFKCAVVVVLAPVVVLLLVSGLLVAWPHVQVAAGGAWGAFRGLTAKTPSVEKCFLQPGEQED----IVCKSGTEAMDCPDHATCGAGRILHCNLPYTLRKDRAACVLVAEAEKEAKAVVEALRTLTAEELCKGKGLIMP--RASARGSFITLTDAATAQSRGPLSLLAGMPPGNVVGLIELEGEPAQVFGG--GQDGAEGCA---GSGMERVARLSESAHDAVMRTLGWRCKARLAAGSWFMTYWQYCLAMYCLVVGAVCLDLRRRNSYYRHVQV 563
BLAST of mRNA_L-elsbetiae_contig756.16457.1 vs. uniprot
Match: A0A6H5L750_9PHAE (MSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L750_9PHAE) HSP 1 Score: 276 bits (706), Expect = 1.580e-78 Identity = 153/274 (55.84%), Postives = 178/274 (64.96%), Query Frame = 3 Query: 1065 WSFNCAVALAPVMFFFLVAGVLWAWPHVQVGAGRAWSTLHGFTARNPAAGKCFLHPSERDTNQAASICKKGADVVDCPDQATCGGGAILSCSFFLERKMDGSACVLTAEAEEEVDAVVQALRILTVEQQCKGNGLIMPSPKAFSARSFITLADAAAAQNRGPLSFLAGMPPGNV-GLIDLEGEAAPDFGGSEGDDALEGNSSNMGSGSERIARLSESAYNAVMLTRSWQCRARLFVWGGLMEYWPFCLGLYALGLIVVCLDCRRRKNYKRHVEV 1883 W+F CAV + VM LV+G+L AWP VQV AG AW G TA+ P KCFL E Q +CK G + DCP ATCG G IL C+ K D +ACVL AEAEEE AVV+ALR LT E+ CKG GLIMP +A S SFITL DAA AQNRGPLS LAGMPPGNV GLI+LEGE A FGG + +G GSG ER+ARLSESA++AVM T W+C+ARL M YW +CL +Y L + VCLD RRR +Y RHV+V Sbjct: 339 WAFKCAVVM--VMVLLLVSGLLVAWPQVQVAAGGAWGAFRGLTAKTPPVEKCFLQLGE----QGDVVCKSGTEATDCPAHATCGAGRILHCNLPYTLKKDRAACVLVAEAEEEAKAVVEALRTLTAEELCKGKGLIMP--RASSRGSFITLTDAATAQNRGPLSLLAGMPPGNVVGLIELEGEPAQVFGGGQ-----DGAEDCAGSGMERVARLSESAHDAVMDTLGWRCKARLAAGSWFMTYWQYCLAMYCLVVGAVCLDLRRRNSYYRHVQV 599 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig756.16457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig756.16457.1 >prot_L-elsbetiae_contig756.16457.1 ID=prot_L-elsbetiae_contig756.16457.1|Name=mRNA_L-elsbetiae_contig756.16457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=627bp MTTPAKKKRRLAEGKAKALEYKASLKRKTAETAEPPPSESNGNPSSGKKPback to top mRNA from alignment at L-elsbetiae_contig756:3791..15572- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig756.16457.1 ID=mRNA_L-elsbetiae_contig756.16457.1|Name=mRNA_L-elsbetiae_contig756.16457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11782bp|location=Sequence derived from alignment at L-elsbetiae_contig756:3791..15572- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig756:3791..15572- >mRNA_L-elsbetiae_contig756.16457.1 ID=mRNA_L-elsbetiae_contig756.16457.1|Name=mRNA_L-elsbetiae_contig756.16457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3762bp|location=Sequence derived from alignment at L-elsbetiae_contig756:3791..15572- (Laminarionema elsbetiae ELsaHSoW15)back to top |