mRNA_L-elsbetiae_contig7557.16454.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7557.16454.1
Unique NamemRNA_L-elsbetiae_contig7557.16454.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Match: D7FNA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA0_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 1.040e-73
Identity = 111/192 (57.81%), Postives = 133/192 (69.27%), Query Frame = 1 
Query:   85 FQPIRRGSKGRTYPAKRRWTAAESEMMQKWVDNGWLVVLEGLDDLYWMYATVARDDVNTVVVTNDLMRDHSDFFPGAREFVRWKRSHHVAFSYVYADGDENGPLDWVAGKQPERPQTPPAIKLRPGASWEEVQRTGANWHLPVRISRNAQEQXXXXXXXXXXXXXXXXXXXXXXXAAAKSFLCVPMPTSMPR 660
              P RRG K R +  KR WT  E+E++QKWV+N WL ++EGLDDLYWMYATVARDDVNT+V+TNDLMRDH +FFPG REFVRWKRSH V+FS+++  G   GP  W+ GKQPE   TPPAI L PGASW+EVQRTG+NWHLPVR+ RN+++                           KS LC+PMPTSM R
Sbjct:    1 MSPSRRGRKARKFSPKRSWTPIETEIVQKWVENQWLAMVEGLDDLYWMYATVARDDVNTLVLTNDLMRDHRNFFPGTREFVRWKRSHLVSFSFLWEKG---GPQAWMQGKQPEESPTPPAINLSPGASWKEVQRTGSNWHLPVRVRRNSKKHNCDNNSDRDDGSRDHAEPI-------KSCLCIPMPTSMTR 182
[Close]
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Match: A0A6H5JWK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK5_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 7.350e-72
Identity = 109/190 (57.37%), Postives = 134/190 (70.53%), Query Frame = 1 
Query:   91 PIRRGSKGRTYPAKRRWTAAESEMMQKWVDNGWLVVLEGLDDLYWMYATVARDDVNTVVVTNDLMRDHSDFFPGAREFVRWKRSHHVAFSYVYADGDENGPLDWVAGKQPERPQTPPAIKLRPGASWEEVQRTGANWHLPVRISRNAQEQXXXXXXXXXXXXXXXXXXXXXXXAAAKSFLCVPMPTSMPR 660
            P RRG K R +  KR WT  E+E++QKWV+N WL+++EGLDDLYWMYATVARDDVNT+VVTNDLMRDH +FFPG REFVRWKRSH V+FS+ +   +++GP  WV G QP+  +TPPAI L PGASW+EVQR G+NWHLPVR+ RN+++                           KS LC+PMPTSM R
Sbjct:    3 PSRRGEKARKFSPKRSWTPMETEIVQKWVNNQWLMMVEGLDDLYWMYATVARDDVNTLVVTNDLMRDHRNFFPGTREFVRWKRSHLVSFSFRW---EKDGPHAWVEGMQPKESRTPPAINLSPGASWKEVQRAGSNWHLPVRVRRNSKKHNYDKNSNGDDGMPNHAEPI-------KSCLCIPMPTSMTR 182
[Close]
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Match: D8LN58_ECTSI (Ribonuclease P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN58_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 4.630e-10
Identity = 55/184 (29.89%), Postives = 83/184 (45.11%), Query Frame = 1 
Query:    1 VDWLAEHLASKGERVLITMPWWYCKDDGF----QPIRRGSKGRTYPAKR----RWTAAESEMMQKWVDNGWLVVLEGLDDLYWMYATVARDDVNTVVVTNDLMRDHSDFFPGAREFVRWKRSHHVAFSYVYADGDENGPLDWVAGK--QPER-PQTPPAIKLRPGASW-EEVQRTGAN-WHLPV 513
            VD + + L +KGER L+ +   Y    G      P R G +  + P  +    RW A     + +  D       E  DD YWMYATVA DD+   V++ND  RDH         ++RW+ +    F   Y       PL  + GK   P+  P  PP + ++P  ++  +VQ++    WH+P 
Sbjct:  615 VDLMVQALEAKGERPLVLIAEKYIDRVGDLYDNSPARGGFRYMSNPLNKAIVKRWRA--KSQLYECSD-------EASDDWYWMYATVAFDDIPMTVISNDRTRDHRMSLAETVPYLRWRTTQLAQFELTY-------PLKDIMGKGLNPQGWPANPPQVAIQPPPAFTRDVQKSEQGCWHVPA 782
[Close]
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Match: D7FNA1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.070e-8
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 VDWLAEHLASKGERVLITMPWWYCKDDGFQPIR 99
            VDWLAEHL SKGERVLITMPW+YCKDD F P+R
Sbjct:  557 VDWLAEHLKSKGERVLITMPWYYCKDDNF-PMR 588
[Close]
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Match: A0A6H5JYJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.590e-7
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 VDWLAEHLASKGERVLITMPWWYCKDDGFQPIRRGSK 111
            VDWLAEHL SKGERVLITMPW+YCK D   P+R G +
Sbjct:  232 VDWLAEHLNSKGERVLITMPWYYCKADNI-PMRAGRR 267
[Close]
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Match: F0YE99_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE99_AURAN)

HSP 1 Score: 61.2 bits (147), Expect = 2.540e-7
Identity = 47/138 (34.06%), Postives = 64/138 (46.38%), Query Frame = 1 
Query:   10 LAEHLASKGERVLITMPWWYCKDDGFQPIRRGSKGRTYPAKR---------RWTAAESEMMQKWVDNGWL-VVLEGL-DDLYWMYATVARDDVNTVVVTNDLMRDHSDFFPGAREFVRWKRSHHVAFSYVYADGDENG 390
            +A HL + G  VL+ +P  YC+      +   SK R   A R             +E   ++ W + G L VV  G  DDLYWM ATV+RD    + V+ND  RDH     G  ++ RW     V F   YA+ D+ G
Sbjct:  738 VAGHLEAAGHVVLVVLPAKYCE----AVVPNHSKRRPRAAARDEPGGTPLQELEDSELAAIKAWAERGALYVVPRGCHDDLYWMLATVSRDQ--PLAVSNDKTRDHWPKLIGEAQYRRWATRSVVNFGLGYAEPDDAG 869
[Close]
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Match: A0A4D9DFA8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFA8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.030e-5
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:  160 MMQKWVDNG--WLVVLEGLDDLYWMYATVARDDVNT---------VVVTNDLMRDHSDFFPGAREFVRWK 336
            M+Q+W + G  + +    LDDLYWMYATVA  D  +         + ++ND MRDH      AR F+RWK
Sbjct:    1 MLQRWTEEGIVYRIPRGQLDDLYWMYATVAARDPPSSPPPSFPPMIAISNDCMRDHWLDLLEARPFLRWK 70
[Close]
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Match: A0A835ZAC6_9STRA (Ribonuclease P n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.580e-5
Identity = 43/145 (29.66%), Postives = 66/145 (45.52%), Query Frame = 1 
Query:    1 VDWLAEHLASKGERVLITMPWWYCKDDGFQPIRRGSKGRTYPAKRRWTAAES-EMMQKWVDNG---------------WLVVLEGL------DDLYWMYATVARDDVNT--VVVTNDLMRDHSDFFPGAREFVRWKRSHHVAFSY 363
            VD + + L ++GERVL+  P  Y +      I   ++      KR   + ++  +++ W + G               ++  L G       DD YWMY TVA D+V     VV+NDLMRDH         FVRWKR+  + + +
Sbjct:  346 VDAVVQKLEARGERVLVVCPERYLR----AIIPNSTRFARLQRKRTVLSPQALAIIRSWEEKGILYRQVRYQLVLCCSYVPTLAGRCANTDNDDWYWMYLTVAFDNVAAPVTVVSNDLMRDHRLALLEPTPFVRWKRTQQMRYYF 486
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7557.16454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FNA0_ECTSI1.040e-7357.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWK5_9PHAE7.350e-7257.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN58_ECTSI4.630e-1029.89Ribonuclease P n=1 Tax=Ectocarpus siliculosus TaxI... [more]
D7FNA1_ECTSI2.070e-884.85PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ8_9PHAE1.590e-772.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YE99_AURAN2.540e-734.06Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A4D9DFA8_9STRA3.030e-541.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835ZAC6_9STRA3.580e-529.66Ribonuclease P n=1 Tax=Tribonema minus TaxID=30337... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7557contigL-elsbetiae_contig7557:1812..7855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue8.6e-10
Seed eggNOG ortholog2880.D8LN58
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionZc3h12a-like Ribonuclease NYN domain protein
Ec32 orthologEc-15_003520.1
Exons5
Model size660
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7557.16454.1prot_L-elsbetiae_contig7557.16454.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7557 1812..7855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.5719774-CDS-L-elsbetiae_contig7557:1811..19031622816839.5719774-CDS-L-elsbetiae_contig7557:1811..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 1812..1903 +
1691683852.9402297-CDS-L-elsbetiae_contig7557:1811..19031691683852.9402297-CDS-L-elsbetiae_contig7557:1811..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 1812..1903 +
1622816839.583629-CDS-L-elsbetiae_contig7557:2292..24371622816839.583629-CDS-L-elsbetiae_contig7557:2292..2437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 2293..2437 +
1691683852.9553473-CDS-L-elsbetiae_contig7557:2292..24371691683852.9553473-CDS-L-elsbetiae_contig7557:2292..2437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 2293..2437 +
1622816839.5944307-CDS-L-elsbetiae_contig7557:3977..41291622816839.5944307-CDS-L-elsbetiae_contig7557:3977..4129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 3978..4129 +
1691683852.9694884-CDS-L-elsbetiae_contig7557:3977..41291691683852.9694884-CDS-L-elsbetiae_contig7557:3977..4129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 3978..4129 +
1622816839.6057363-CDS-L-elsbetiae_contig7557:6797..69291622816839.6057363-CDS-L-elsbetiae_contig7557:6797..6929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 6798..6929 +
1691683852.980528-CDS-L-elsbetiae_contig7557:6797..69291691683852.980528-CDS-L-elsbetiae_contig7557:6797..6929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 6798..6929 +
1622816839.6163204-CDS-L-elsbetiae_contig7557:7716..78551622816839.6163204-CDS-L-elsbetiae_contig7557:7716..7855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 7717..7855 +
1691683852.9956887-CDS-L-elsbetiae_contig7557:7716..78551691683852.9956887-CDS-L-elsbetiae_contig7557:7716..7855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 7717..7855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7557.16454.1

>prot_L-elsbetiae_contig7557.16454.1 ID=prot_L-elsbetiae_contig7557.16454.1|Name=mRNA_L-elsbetiae_contig7557.16454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
VDWLAEHLASKGERVLITMPWWYCKDDGFQPIRRGSKGRTYPAKRRWTAA
ESEMMQKWVDNGWLVVLEGLDDLYWMYATVARDDVNTVVVTNDLMRDHSD
FFPGAREFVRWKRSHHVAFSYVYADGDENGPLDWVAGKQPERPQTPPAIK
LRPGASWEEVQRTGANWHLPVRISRNAQEQDDDDNDGSSSHNRGRDSGDA
AASAAAKSFLCVPMPTSMPR
back to top

mRNA from alignment at L-elsbetiae_contig7557:1812..7855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7557.16454.1 ID=mRNA_L-elsbetiae_contig7557.16454.1|Name=mRNA_L-elsbetiae_contig7557.16454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6044bp|location=Sequence derived from alignment at L-elsbetiae_contig7557:1812..7855+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGACTGGCTGGCGGAGCACCTTGCGTCCAAGGGCGAGCGGGTTTTGAT
CACGATGCCGTGGTGGTACTGCAAGGATGACGGCTTTCAACCGTGAGCGC
TCTGTTTTGATGTTTGTTGGTTGGTTGTCTTATTGCGTACACCGACCAAT
GCAATAGATAGCCTCTCTACATCCCGCGCGCGAGAAAGGCGAGGAGGGAA
AACCGCACAAAACGATACACTGTCACACGACTTCCAAGCCATTTACCAGG
TAGTTTATTGTTTGTTGTTTTCGTGTTTTCTCGGTGATTGCTGTCTGTCA
AACAAACGCCGGTGGAAAGCCCGCGCCATGCGCCCCACTTTGTATACCAC
GCGTACGCATGTACGTACATGCATGAAGCATCCATACTTCATACGACTTG
TAGCTGTTTGTTGCATAGATACATAATTAGCTTATGGTTTATTGCTTTTG
CTTGGTGAACATTTCGTGTTTGCTTCTATAGTATCAGACGCGGATCGAAG
GGCCGCACGTACCCCGCGAAGCGGCGGTGGACTGCCGCCGAGTCGGAAAT
GATGCAGAAGTGGGTCGACAACGGCTGGCTGGTGGTATTGGAGGGCCTCG
ACGACCTGTACTGGATGTATGCCACGGTGAGAGACGGAGCCCGTCATAGA
CGATAACGACGGCGGTGCCAAGCTTTTCTACCGTAGGTGACACAAGATAA
GACACCCCCCGGACCGATTTTCAAAGCTCAAGTACTCCACAGCAAGCAGA
GCGTCGGTCCCGAAAAGGGCGGCGTTGGAAAGATCTCGTCGAGAGCTGTC
CCAAAATGTGGCGTTTGTGGTTAAGAATCGTATTCGTTGCGGAGTAACCA
AGCTTTCAATCTCGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGGTA
GTACTTAGCTTGCGCAGGTTTTGCCTTGAGCAAACAAAGATATAGGGTAA
AGTACAGGAACTGCGAAAGGGTCGGGGTTAGGGTTAGTTAGGGTTCAGGA
TTATTTACGGAACCCATGCCTCTATTTCCAAGATAAACCTGATTTCTTCG
CGAAGGCGGTTTACCTTTTTATTTTCAGGGCTGTGATTGGATCTCAGTTT
TGCAAGGGTCCCCTTGACCGTTTGCACTCTTGAGAATCCTTTCAGTAGTA
TGGATGGGCACCGTTGATAGGGGCTCGGAGATAGGGAAATGGGGTTGCAC
GATAAAGGTGGGGGAGTGAAAGTTTGGCGACATCACTTGGGGACAACAGG
CACTAGTGCCCCTGTACACTAAAAGCCGGATGACCTGTACGGGGGCAAAG
AGAGGCAAGACGGTAAGTAGCGGTGTTATTTGTGTTTCTTGATGAGGGTT
GTCGGGTGAGACGGTGGCGTTGTTGCTGTTGCCGTTGCTGTTGTTGGCTG
TTGTTGCTGCTGCTGCTGCTGCTGTTGTTGGTTGTTGTTGTTGTTGTTGT
TGTTGTTGCTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGCTGTTGTTG
TTGGTGTTTTTGATGTGTCTGTCAGTTGTTGTTGGTGCTGCCAGCTGTTC
TTGCGAGAACCCTTTGTGCAGTGCGTTTTGCCGTTTTCGGATGCCGGCAT
GGTACACGGCGCCCATAGTGTTGGGCACCTCAACAGGATGAAGGACTAAG
GTGCATAGGCCCTTTGGAAGTTCTCTTTTTGCTTGTGTTGTTGCGTCAAG
CATCGCCTTTGTCCGTGGCACAAGGCACAGCAGACCACGCAAACCTAGAC
AAAGCAGCAATGTGGTTGCAAAATGCTGTGTACATGCCCACTCTTTTTGA
GAAATACGCCACTGCTACATACAAGTAAAAGCACAGGTCTAAACTTTTGT
CCAGACCACTCTTCTGAGGAATAACACGCCAAGACACCAAGCATCGAAGC
AAAAATAAAATGGTGACTGCTGTTCAAGCTGTTGAGCCAACCCGGTCGGA
GATGAAGAGGCGCACCGTTTTGGAGGGGAAGTTAGCCCCGACCAAAATAC
TGCCACACTGGGATTAAATCACTTGCGCGTCATTTCATGTGTGTCGATGT
CGCGTAAGTCCATACCATGGGTTGAATTCGCTTGGAAATTTCAACGGAAG
AAGCTGCTTCACAATCCGAACGCATACATGGGGATTGAGTGGTCGTCGTC
GTCCCCCCCCCTCTAGGTGGCGCGCGATGATGTCAACACGGTGGTCGTGA
CGAACGACCTGATGCGGGACCACAGCGACTTCTTCCCCGGAGCCCGAGAG
TTCGTGCGCTGGAAGCGCAGCCATCACGTCGCGTTCTCGTACGTCTACGC
GGACGGGGACGAGAACGGGTGAGTTTTTTTGCCGTCGTTTTCGCATTAAA
TCTAGGCCTATTTATGCGGCAGGAGAAGAGGGAGTTGGGTGTCATGCTTT
TGTTTTTCGCATGGCGTTATGTGGCGTACTTTGTGGCTCACGCTGCTGGG
TATGTCAAGCGCGCAGCCTCAAGTTGCGTGCAGGAGAGATTGTTTTGTTG
TTATTTTTTCAACGGCGTTACTGCTCTCTCTATGGTACACGTGCTACAAC
ACCCCGGTACTTACTGTTGGGGCTTCACTTGTGCAGGAGAGCGGAATCGA
TCGTGTCGTTGAGAAGCCAAAACAAATCGCTGTTTTGGTGACATGTTCCC
TGCGATCCACGTGTGCACGTTTAATTTCTCATTAAATTTACTTCGGCTTT
ATTTGGGTTGTGTACCCGACCATCGCCTGTTCCGTTCTTGTTCCTGGGGG
TTGCTGAAGAACATTGAACCGAATGATGAAATAGGACGGTTCACGGCTGT
TCAACGCATCTACATATTTCAGGCTTAGCTATGACGGGAAATATAATGTA
CCATGCTCGGCATTAATGGACAAATTCTAAAATCCATTTATGGTTTTTAG
TCCTTCTCGCGCCAAACGATTCAAACCTAAAAGGGTAATTCCGCCGCGTT
TTTAGCCCTGTAACCCGCCGCGTTTTGAGGCGCTTTCTTTCAAAAACGCG
TTCTCCTGTTTTCTCGCCGCACACGCTGCCAACGGGCGTCAATTTTCGCC
GGTGAACGCATATGGGCCTCAAGGTTGTGCCCCCCCCAATATCCCCTCTC
GCCAAGGCCGGGTGCGGGAGAAAGCGTCGGTGAACCTTCCAAAATCACGG
TCCGATCAGGATGTACTCGTGCTCGCGCTTGGGATCACATGCGCGAGCCG
CTGGTGCTATAGCTAAGCCTATCGCGCATCGTCTGGCCGAGTTACGTAGA
AATCGTTGGAGCCGATTAGGAGAAAATCGAGACTGTGTGTGTAACCCCGG
CAAACCTTGGTGGCCGTTTTCTCGCCCTACCACCAAGGGTCCTTTTTTTG
TGTGAATCAAGTGATGATCAATTTGAGACCCGTCATGTGGACGCAAGTTG
ACAGCTTCACCTGCGCAGCTCGCGGATACACGTATCTACATATCACAAAG
GGCGTCCGGGAAAGGTTTCCCGACCGCCGGAGGGCGTGGTGGCGGTGTGC
ACTCGAACCGCGAGAGATAGAGCATACGTTGCGCGTGTGTGGTGTTTTTT
TGAGCAGCAGATCGACCGCGGTTGTATGCAGTCCTCTCTCGCCCGAACTC
CGCACAGAGGTCTCCACTGCTGTACAGCAGCTAATCCTACATCTTTGCTA
TAACGATAGTGTGGGCTGTGATTGGTGGGGCTACCGCTTTCGTTTTCGTG
GTGTACGGACTTGTCTGCTGTGCATGCACGAAAAAAGGCTTGGCTTCGTC
CGCCTCTGTTTTTTTTTCTCTCCATCGGGGTGTGATGAGTAAAAAATGGC
TGATTGGGGGGGGGGGGGGGGGGCTGTCAAACGTCGGGTGTTGTTGTACC
ATCACGAGAGCCGGCGCCCCGGCACCAGTATTTTGTTTGTGTTCTCTTCA
TTTGCATCATCACTCATCACTCGTTGCTAGTGGAAGTTTACGGAGGAGCA
CACCTCCGCACTCTTCCTACAAAATAGCAACGCACACACCACAAATGTTT
ACCAGACGTAAGATATACCGTACGTATCCGTATTCTGCCGCATATCCATA
CATACGTCACAATCGTCCCGCACACACATACGCAACATGTACTCCTCCCG
CGGGTATAGTCCGATACACAAGATGACAACCACAGTCTTGTTGAGCCTGT
TATTAGTAACGGGAGATACCACTGTTATACAAGTGCCCAGGATAGAAACA
AACCTCGTCGATCACAACGCCACTGTGTGTACCCTCACAAAGGTATACGA
CGACTGGAGTTAGAGACAACAATAAAATAATAAAAAAAAGAGGGTACACG
CAGTACTAGTAGTAGTGGCGTCCGTTGTAGTCGAGTGGTTTGTTTCTATC
TATCCTGGGCACTTGTATTGTGTAGTGATATCTCCCCTGTTGACAATAAC
AGAGGCTCAACAAGACAGTGCGGTTGCCTACTACATAAATAATAGATGCA
TGCCCTCTCTACCGAATCCCTCTCTTCTTTCTCTTCGCATCTTGTCTTGC
CTCGCGCCCACTTCCTGTCGGTTTTCCTTGTCTACAGCAGCAGCAGCAGT
AAGCATTATTTCCAAAAAAGGACAGGGGATTTTAGACGAGGCTGGGCTAC
CCCAGGCGATTTATAAAAGATGGGGGTAAATGTAAATGTGCCGAATGTAT
ACGCATGACAGGATTATCCCACACCTGCCAGAACGGTTTTCGAGCATCAA
CTACTTCTCACTAGAGAAGTAGCCAAGAGCGATCGAAATTTTTTCGGAAA
TGCGTTGCTGTTTTTTCTATATTGTTTTTAAGGTTTGTGTATCCCCGGCA
AGATTTAGCAGGCAAATTGTACCTCCTTGTTGCCTCGCTTGCTCTTTCAC
CTTCGCTCCTCTCCTCTCTTGCACTGTTACATAGACTATATGGCCATCCC
GCTTCTCTGGAAGGTTTTTGTAATCCTCTGTTTCGCCTCGATTTATCTCT
CCTGTCTTCTCTCTTGTGCCACCACAACGAAAAAAGGCCCCTCGATTGGG
TTGCGGGCAAGCAGCCAGAGAGACCCCAGACCCCACCCGCGATCAAGCTC
CGCCCCGGGGCCTCTTGGGAGGAGGTTCAGCGGACGGGGGCTAACTGGCA
CCTACCCGTCAGAATAAGGTGACATATCCCCTCCCCCTCTCCCCTCGAAC
TACAGTAGTGTGGTGGTAGAATCTGGCATTTGTTTCTCAGTGGACGTTAT
TGCCGCTTATGCAATTGACAGCGTCGTTCACCTGCCACAATCCTAGGCGG
TGGCACGACCGAATATAATTGTTCCTCCCTCTTCCGTAGTTGTTGTTGCT
GCTGGTGCTGCTGGTGCTGCTGTTGCTGTTGGCGACATGGCGGTTTGCGG
TTTGCGAGGCGTCGGTGCTGCCTTGAACACGAGGCGAGAAAAGAGATGCG
CAAGACAGAGGGCGTGGCTGAAGTGTTGTTTTCATTCTTTCAGGCCCAGG
CTGGTAGCCTGTCTACGCAACATGCTCTCGTGTTTCTACGCAACTCAGTG
GGCACAATCACCATCACCCCTCCCCCCCCCCCGCTGATATGTTTTTGTTC
GCGGGGTTATGCAACGCTAAATAGAACCCAATCGGTTCTGGTCTGTCCCG
TTGGTTTCGTTTGTGTTCCGATATCTTCTCTTGATTTCTACTCGTTTCTC
TGTTACTTGCGCTCGTGTTTAATTGCTTGCTCGTCGGCGTTGTTTGGGTG
GTTGTTTAGTTGGACTGCTGTTTTGCGTCGCTCGTTGATACTGACTGGTT
GATGCGGTTCCGCGGGAAAACGCAGATGCAGCAGGAGAATGTTGTGAAAT
CGCCGCGGTTTGTCGCGAAAGGCCTGACAACCGCCCCCTCCCATCTGCTC
TCTCTGCTCCAATTGCTTCCTCTTTCTCGTTCCGCCCTGTCCAAAACCTG
CTCAGCCGAAACGCTCAAGAGCAAGACGACGACGACAACGACGGCAGCAG
CAGCCACAATAGGGGCCGCGACAGCGGTGACGCGGCGGCCAGTGCGGCAG
CGAAGAGCTTCCTCTGCGTCCCGATGCCGACGTCCATGCCGCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7557:1812..7855+

>mRNA_L-elsbetiae_contig7557.16454.1 ID=mRNA_L-elsbetiae_contig7557.16454.1|Name=mRNA_L-elsbetiae_contig7557.16454.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig7557:1812..7855+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGACTGGCTGGCGGAGCACCTTGCGTCCAAGGGCGAGCGGGTTTTGAT
CACGATGCCGTGGTGGTACTGCAAGGATGACGGCTTTCAACCGTGGACTG
GCTGGCGGAGCACCTTGCGTCCAAGGGCGAGCGGGTTTTGATCACGATGC
CGTGGTGGTACTGCAAGGATGACGGCTTTCAACCTATCAGACGCGGATCG
AAGGGCCGCACGTACCCCGCGAAGCGGCGGTGGACTGCCGCCGAGTCGGA
AATGATGCAGAAGTGGGTCGACAACGGCTGGCTGGTGGTATTGGAGGGCC
TCGACGACCTGTACTGGATGTATGCCACGTATCAGACGCGGATCGAAGGG
CCGCACGTACCCCGCGAAGCGGCGGTGGACTGCCGCCGAGTCGGAAATGA
TGCAGAAGTGGGTCGACAACGGCTGGCTGGTGGTATTGGAGGGCCTCGAC
GACCTGTACTGGATGTATGCCACGGTGGCGCGCGATGATGTCAACACGGT
GGTCGTGACGAACGACCTGATGCGGGACCACAGCGACTTCTTCCCCGGAG
CCCGAGAGTTCGTGCGCTGGAAGCGCAGCCATCACGTCGCGTTCTCGTAC
GTCTACGCGGACGGGGACGAGAACGGGTGGCGCGCGATGATGTCAACACG
GTGGTCGTGACGAACGACCTGATGCGGGACCACAGCGACTTCTTCCCCGG
AGCCCGAGAGTTCGTGCGCTGGAAGCGCAGCCATCACGTCGCGTTCTCGT
ACGTCTACGCGGACGGGGACGAGAACGGGCCCCTCGATTGGGTTGCGGGC
AAGCAGCCAGAGAGACCCCAGACCCCACCCGCGATCAAGCTCCGCCCCGG
GGCCTCTTGGGAGGAGGTTCAGCGGACGGGGGCTAACTGGCACCTACCCG
TCAGAATAAGGCCCCTCGATTGGGTTGCGGGCAAGCAGCCAGAGAGACCC
CAGACCCCACCCGCGATCAAGCTCCGCCCCGGGGCCTCTTGGGAGGAGGT
TCAGCGGACGGGGGCTAACTGGCACCTACCCGTCAGAATAAGCCGAAACG
CTCAAGAGCAAGACGACGACGACAACGACGGCAGCAGCAGCCACAATAGG
GGCCGCGACAGCGGTGACGCGGCGGCCAGTGCGGCAGCGAAGAGCTTCCT
CTGCGTCCCGATGCCGACGTCCATGCCGCGGCCGAAACGCTCAAGAGCAA
GACGACGACGACAACGACGGCAGCAGCAGCCACAATAGGGGCCGCGACAG
CGGTGACGCGGCGGCCAGTGCGGCAGCGAAGAGCTTCCTCTGCGTCCCGA
TGCCGACGTCCATGCCGCGG
back to top