mRNA_L-elsbetiae_contig7557.16453.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7557.16453.1
Unique NamemRNA_L-elsbetiae_contig7557.16453.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7557.16453.1 vs. uniprot
Match: D7FNA1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.660e-19
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QVQRLSWFANWFDSLEDPPTAIIDGPNAGYMGQNFPEGGFSLTQ 132
            +VQRLSWFANWF SLEDPPTAIIDGPN G+M QNF EGGFSLTQ
Sbjct:  513 EVQRLSWFANWFCSLEDPPTAIIDGPNVGFMNQNFKEGGFSLTQ 556
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BLAST of mRNA_L-elsbetiae_contig7557.16453.1 vs. uniprot
Match: A0A6H5JYJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.520e-17
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 VQRLSWFANWFDSLEDPPTAIIDGPNAGYMGQNFPEGGFSLTQA 135
            VQRLSWFANWF SLEDPPTAIIDGPN G+M QNF  GG S TQA
Sbjct:  174 VQRLSWFANWFCSLEDPPTAIIDGPNVGFMNQNFKGGGLSFTQA 217
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7557.16453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA1_ECTSI5.660e-1986.36PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ8_9PHAE1.520e-1781.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7557contigL-elsbetiae_contig7557:403..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D7FNA1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size136
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816839.5372107-CDS-L-elsbetiae_contig7557:402..5371622816839.5372107-CDS-L-elsbetiae_contig7557:402..537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 403..537 +
1691683852.9260406-CDS-L-elsbetiae_contig7557:402..5371691683852.9260406-CDS-L-elsbetiae_contig7557:402..537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7557 403..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7557.16453.1prot_L-elsbetiae_contig7557.16453.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7557 403..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7557.16453.1

>prot_L-elsbetiae_contig7557.16453.1 ID=prot_L-elsbetiae_contig7557.16453.1|Name=mRNA_L-elsbetiae_contig7557.16453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
QVQRLSWFANWFDSLEDPPTAIIDGPNAGYMGQNFPEGGFSLTQA
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mRNA from alignment at L-elsbetiae_contig7557:403..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7557.16453.1 ID=mRNA_L-elsbetiae_contig7557.16453.1|Name=mRNA_L-elsbetiae_contig7557.16453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=136bp|location=Sequence derived from alignment at L-elsbetiae_contig7557:403..538+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCAGCGACTCAGCTGGTTCGCTAATTGGTTCGACTCCCTGGAGGA
TCCTCCGACGGCCATTATTGACGGCCCCAACGCTGGATACATGGGCCAAA
ACTTTCCGGAAGGAGGGTTCAGCCTAACACAGGCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7557:403..538+

>mRNA_L-elsbetiae_contig7557.16453.1 ID=mRNA_L-elsbetiae_contig7557.16453.1|Name=mRNA_L-elsbetiae_contig7557.16453.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig7557:403..538+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCAGCGACTCAGCTGGTTCGCTAATTGGTTCGACTCCCTGGAGGA
TCCTCCGACGGCCATTATTGACGGCCCCAACGCTGGATACATGGGCCAAA
ACTTTCCGGAAGGAGGGTTCAGCCTAACACAGGCACAGGTGCAGCGACTC
AGCTGGTTCGCTAATTGGTTCGACTCCCTGGAGGATCCTCCGACGGCCAT
TATTGACGGCCCCAACGCTGGATACATGGGCCAAAACTTTCCGGAAGGAG
GGTTCAGCCTAACACAGGCA
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