mRNA_L-elsbetiae_contig7547.16447.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7547.16447.1
Unique NamemRNA_L-elsbetiae_contig7547.16447.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: D8LPQ2_ECTSI (ARFRP1, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPQ2_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 1.600e-135
Identity = 191/194 (98.45%), Postives = 193/194 (99.48%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRARPRIDT 617
            MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTV+EQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRARPR+D 
Sbjct:    1 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVKEQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRARPRVDA 194          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: A0A835YY21_9STRA (ARFRP1, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY21_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.130e-85
Identity = 126/189 (66.67%), Postives = 155/189 (82.01%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 602
            MFSL+AGL RYL SKT++NVLILGLD AGKTTLLEQMKGIFKKV GIPP+KIPPT+GLNV KMD+GG  +TFWD+GGQVR+R+LWE+YYADAH LI VMDSAD  RFEEA++AF  VREQ ELH +PL++LANKQD+  A S  DI+ QFD HK+  V FR+   S L+ +GV EGI W++ +A+++ +
Sbjct:    1 MFSLLAGLWRYLTSKTQVNVLILGLDDAGKTTLLEQMKGIFKKVPGIPPAKIPPTIGLNVAKMDIGGVSVTFWDVGGQVRLRALWERYYADAHALICVMDSADAARFEEAQLAFHAVREQAELHALPLLLLANKQDVAGACSGGDIAAQFDAHKVMGVPFRVHAVSALSGEGVNEGISWLIAKAREKTQ 189          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: A0A7S2BA16_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BA16_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.600e-85
Identity = 118/189 (62.43%), Postives = 156/189 (82.54%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 602
            MFSLI+G  +  F+K E+ VLILGLD+AGKTTLLEQMKG+F K QGIPP +IPPT+GLN+GKMDVG C++ FWDLGGQVR+RS+WEKYYA+AHG++FV+DSADVGR EEA++AFD VRE  EL G+P+++LANKQDLP A++  DI++ F++H +     RLQP S LTC+G+ +G+ W+V+E++   R
Sbjct:   60 MFSLISGFWKIFFAKVEVQVLILGLDHAGKTTLLEQMKGLFNKQQGIPPERIPPTIGLNIGKMDVGTCRVIFWDLGGQVRMRSIWEKYYAEAHGMVFVIDSADVGRMEEAKLAFDAVREHEELRGIPVLLLANKQDLPGAMAIEDIAMHFEIHNLPPRLVRLQPASCLTCEGIEDGVRWVVEESRTADR 248          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: W7TPL1_9STRA (1-family small gtpase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPL1_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.030e-81
Identity = 117/190 (61.58%), Postives = 155/190 (81.58%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKV-AFRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 602
            MFSL+AG I+YLFSKTE++VLILGLD+AGKTTLLEQ KGIF+KVQGIPP KI PTVGLNVGKMD+ GC +  WDLGGQVR+RS+W+KYYADAHG++FV+D+ADVGRFEEA++AF ++ +  +L  VP+++ ANKQDLP A+S  D++  F++ ++ +    ++  CS LTC+G+  G+ W+V EAK  AR
Sbjct:    1 MFSLLAGFIKYLFSKTEVHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFEIDRVLRHRVIQVHSCSALTCEGLESGVRWLVQEAKGLAR 190          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: A0A8J6CF14_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CF14_DIALT)

HSP 1 Score: 210 bits (535), Expect = 1.060e-64
Identity = 100/191 (52.36%), Postives = 140/191 (73.30%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVA--FRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 602
            MFSLIAGL  YLF K E  VLILG+D+AGKTT LEQMKG+F+K++ + P KIPPTVGLN+G+M+VG  KL FWDLGGQ  +R +WEKY+A+ HGL++V+D+AD  RF+E+R  F+ + +  +L GVP+++LANKQDL  A +  +I  +F    +   +  +R++P S +T  G+A+GI W+VD  K  +R
Sbjct:    1 MFSLIAGLFEYLFKKAEFQVLILGVDHAGKTTALEQMKGLFQKIEPLAPEKIPPTVGLNIGRMEVGRVKLIFWDLGGQSGLRGIWEKYFAEVHGLVYVIDAADDQRFDESRRIFEALVKHPDLAGVPVLILANKQDLHSAATIDEIDERFGFGSLCAPSQQYRIEPVSAITGSGIADGITWMVDMLKLSSR 191          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: A0A4D9CTS6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTS6_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.590e-64
Identity = 104/175 (59.43%), Postives = 141/175 (80.57%), Query Frame = 3
Query:   81 TEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKV-AFRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 602
            ++++VLILGLD+AGKTTLLEQ KGIF+KVQGIPP KI PTVGLNVGKMD+ GC +  WDLGGQVR+RS+W+KYYADAHG++FV+D+ADVGRFEEA++AF ++ +  +L  VP+++ ANKQDLP A+S  D++  F + ++ +    ++ PCS LTC+G+  G+ W+V EAK  AR
Sbjct: 1022 SQLHVLILGLDHAGKTTLLEQSKGIFRKVQGIPPEKITPTVGLNVGKMDIEGCFVILWDLGGQVRMRSIWDKYYADAHGVVFVLDAADVGRFEEAKLAFASILDHEDLGDVPVLLFANKQDLPGALSEEDVAESFKIDRVLRHRVIQVHPCSALTCEGLESGVRWLVQEAKGLAR 1196          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: A0A7S2WHH1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WHH1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 5.230e-64
Identity = 107/211 (50.71%), Postives = 143/211 (67.77%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQG-IPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQF-----DMHKITKVAF---------------------RLQPCSGLTCDGVAEGIHWIVDEA 587
            MFSL++G  ++LFSKTEI +LI+GLD+AGKTTLLEQMKGIF+K    IP  KIPPTVGLN+G+MD+  C++ FWDLGGQ+ +RS+W+KYY++AHGLIFV+DSAD+ RFEEA+ A +++    EL GVPL++ ANKQDL  +    +I+  F      + KI   A                      +LQP S LTC G+ +GI W+V+ A
Sbjct:    1 MFSLLSGFFKWLFSKTEIQILIIGLDHAGKTTLLEQMKGIFQKAANQIPLDKIPPTVGLNIGRMDIDNCRVIFWDLGGQIALRSIWDKYYSEAHGLIFVLDSADIDRFEEAKAAMESIASHPELAGVPLLVCANKQDLATSRGYDEINEYFRVVSESLGKIGSNADSEQNSMNASEHILSLGKRRERKLQPVSALTCSGIEDGIRWLVNAA 211          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: A0A484KDI7_9ASTE (Uncharacterized protein n=5 Tax=Convolvulaceae TaxID=4118 RepID=A0A484KDI7_9ASTE)

HSP 1 Score: 200 bits (509), Expect = 1.050e-60
Identity = 93/189 (49.21%), Postives = 134/189 (70.90%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 602
            MFSL  GL +Y+FSKTE +VLILG+D AGKTTLLE++K  F  ++G+PP +I PTVGLN+G+++V   KL FWDLGGQ  +RS+WEKYY +AH ++FV+D+A   RFE+A+ A + V    +LHG PL++LANKQDL EA S  ++    D+ K+ +  +++Q  S     G+ E ++W+VD  ++  R
Sbjct:    1 MFSLFYGLWKYVFSKTEFHVLILGIDKAGKTTLLEKLKSQFLNIEGLPPDRIVPTVGLNIGRVEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVLFVVDAACPSRFEDAKSALEKVLRHEDLHGAPLLILANKQDLAEAASAEELDRYLDLKKLGERVYKIQAVSAYEGIGIKESVNWLVDAMERSKR 189          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: T0QBI1_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QBI1_SAPDV)

HSP 1 Score: 199 bits (507), Expect = 1.860e-60
Identity = 95/190 (50.00%), Postives = 131/190 (68.95%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKI-TKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 602
            MFSL+ G   YLFSK E+++LI+GLDYAGKTTLLEQ+KG F K  GIP  KIPPTVGLN+ K+D+    + FWDLGGQ R+R++W KYY+++HG++FV+D+AD  RF+EAR A DT+    EL G+P+++LANK DL +A     I+    +  + +    R Q  S L+ DGV + +HW++   K   R
Sbjct:    1 MFSLLLGFWNYLFSKAEVHILIIGLDYAGKTTLLEQLKGRFGKKPGIPLDKIPPTVGLNIAKVDISRTNVIFWDLGGQERLRAIWSKYYSESHGIVFVLDAADEARFDEARSALDTMLANAELDGIPILLLANKNDLADAQDMGVIAECLGVASLPSHHEARAQSISALSMDGVEDAVHWLIGAVKNSDR 190          
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Match: A0A024TCB2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCB2_9STRA)

HSP 1 Score: 199 bits (505), Expect = 4.360e-60
Identity = 92/190 (48.42%), Postives = 137/190 (72.11%), Query Frame = 3
Query:   36 MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPSKIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMDSADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQFDMHKITKV-AFRLQPCSGLTCDGVAEGIHWIVDEAKKRAR 602
            M SL  GL +YLFSK E+++LI+GLDYAGKTTLLEQ+K +F K  GIP  KIPPTVGLN+ K+D+    + FWDLGGQ R+R++W KYY ++HG++FV+DS+D  RF+EA+ A  ++    EL  VP+++LANK DL  ++ TA+++ + +++++ +   + L+P S LT DG+A+ + W V   K+  R
Sbjct:    1 MISLFWGLWQYLFSKAEVHLLIIGLDYAGKTTLLEQLKTMFGKKAGIPLDKIPPTVGLNIAKVDISRTNVIFWDLGGQERLRAIWSKYYNESHGVVFVVDSSDTARFDEAKAALASMLAHPELSDVPVLVLANKSDLDASMGTAELTARLELNRLAEAHPWTLRPISALTTDGIADAVTWFVSAVKQTGR 190          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7547.16447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPQ2_ECTSI1.600e-13598.45ARFRP1, ARF-like Ras superfamily GTPase n=2 Tax=Ec... [more]
A0A835YY21_9STRA1.130e-8566.67ARFRP1, ARF-like ras superfamily GTPase n=1 Tax=Tr... [more]
A0A7S2BA16_9STRA2.600e-8562.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7TPL1_9STRA1.030e-8161.581-family small gtpase n=1 Tax=Nannochloropsis gadi... [more]
A0A8J6CF14_DIALT1.060e-6452.36Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A4D9CTS6_9STRA1.590e-6459.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2WHH1_9STRA5.230e-6450.71Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A484KDI7_9ASTE1.050e-6049.21Uncharacterized protein n=5 Tax=Convolvulaceae Tax... [more]
T0QBI1_SAPDV1.860e-6050.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024TCB2_9STRA4.360e-6048.42Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7547contigL-elsbetiae_contig7547:1760..4660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.7
Seed ortholog evalue2e-106
Seed eggNOG ortholog2880.D8LPQ2
Preferred nameARFRP1
KEGG koko:K07952
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006892,GO:0006893,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0023052,GO:0031090,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034613,GO:0034976,GO:0042147,GO:0042175,GO:0042886,GO:0043001,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048598,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061951,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072657,GO:0072659,GO:0090150,GO:0098588,GO:0098791,GO:0098876,GO:1990778
EggNOG free text desc.Golgi to plasma membrane protein transport
EggNOG OGsKOG0076@1,KOG0076@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Ec32 ortholog descriptionARFRP1, ARF-like Ras superfamily GTPase
Ec32 orthologEc-18_002040.1
Exons7
Model size873
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.9104202-UTR-L-elsbetiae_contig7547:1759..20121622816838.9104202-UTR-L-elsbetiae_contig7547:1759..2012Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7547 1760..2012 -
1691683852.3705027-UTR-L-elsbetiae_contig7547:1759..20121691683852.3705027-UTR-L-elsbetiae_contig7547:1759..2012Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7547 1760..2012 -
1622816839.0108502-UTR-L-elsbetiae_contig7547:4625..46601622816839.0108502-UTR-L-elsbetiae_contig7547:4625..4660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7547 4626..4660 -
1691683852.494561-UTR-L-elsbetiae_contig7547:4625..46601691683852.494561-UTR-L-elsbetiae_contig7547:4625..4660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7547 4626..4660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.9233162-CDS-L-elsbetiae_contig7547:2012..20881622816838.9233162-CDS-L-elsbetiae_contig7547:2012..2088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 2013..2088 -
1691683852.4046388-CDS-L-elsbetiae_contig7547:2012..20881691683852.4046388-CDS-L-elsbetiae_contig7547:2012..2088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 2013..2088 -
1622816838.9378066-CDS-L-elsbetiae_contig7547:2365..25311622816838.9378066-CDS-L-elsbetiae_contig7547:2365..2531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 2366..2531 -
1691683852.4238763-CDS-L-elsbetiae_contig7547:2365..25311691683852.4238763-CDS-L-elsbetiae_contig7547:2365..2531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 2366..2531 -
1622816838.9524353-CDS-L-elsbetiae_contig7547:2892..30011622816838.9524353-CDS-L-elsbetiae_contig7547:2892..3001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 2893..3001 -
1691683852.4364295-CDS-L-elsbetiae_contig7547:2892..30011691683852.4364295-CDS-L-elsbetiae_contig7547:2892..3001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 2893..3001 -
1622816838.9675784-CDS-L-elsbetiae_contig7547:3434..34901622816838.9675784-CDS-L-elsbetiae_contig7547:3434..3490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 3435..3490 -
1691683852.4523413-CDS-L-elsbetiae_contig7547:3434..34901691683852.4523413-CDS-L-elsbetiae_contig7547:3434..3490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 3435..3490 -
1622816838.9792588-CDS-L-elsbetiae_contig7547:3817..39021622816838.9792588-CDS-L-elsbetiae_contig7547:3817..3902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 3818..3902 -
1691683852.4637427-CDS-L-elsbetiae_contig7547:3817..39021691683852.4637427-CDS-L-elsbetiae_contig7547:3817..3902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 3818..3902 -
1622816838.9910738-CDS-L-elsbetiae_contig7547:4377..44671622816838.9910738-CDS-L-elsbetiae_contig7547:4377..4467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 4378..4467 -
1691683852.474258-CDS-L-elsbetiae_contig7547:4377..44671691683852.474258-CDS-L-elsbetiae_contig7547:4377..4467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 4378..4467 -
1622816839.000654-CDS-L-elsbetiae_contig7547:4622..46251622816839.000654-CDS-L-elsbetiae_contig7547:4622..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 4623..4625 -
1691683852.484314-CDS-L-elsbetiae_contig7547:4622..46251691683852.484314-CDS-L-elsbetiae_contig7547:4622..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7547 4623..4625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7547.16447.1prot_L-elsbetiae_contig7547.16447.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7547 2013..4625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7547.16447.1

>prot_L-elsbetiae_contig7547.16447.1 ID=prot_L-elsbetiae_contig7547.16447.1|Name=mRNA_L-elsbetiae_contig7547.16447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MFSLIAGLIRYLFSKTEINVLILGLDYAGKTTLLEQMKGIFKKVQGIPPS
KIPPTVGLNVGKMDVGGCKLTFWDLGGQVRVRSLWEKYYADAHGLIFVMD
SADVGRFEEARMAFDTVREQGELHGVPLMMLANKQDLPEAISTADISVQF
DMHKITKVAFRLQPCSGLTCDGVAEGIHWIVDEAKKRARPRIDT*
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mRNA from alignment at L-elsbetiae_contig7547:1760..4660-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7547.16447.1 ID=mRNA_L-elsbetiae_contig7547.16447.1|Name=mRNA_L-elsbetiae_contig7547.16447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2901bp|location=Sequence derived from alignment at L-elsbetiae_contig7547:1760..4660- (Laminarionema elsbetiae ELsaHSoW15)
CTGGCCTGGCTGCACCACGTGACAAGGCGTTTCCAATGGTGAGATACGGA GACCTACTGCTAGTAGACCCTTGGTGGTGGTATGGACGAATAGTTGCCGT ATGGTGGCATGATTGCTCTTCTTGTTGCCCCTCCATTGTAACTCTCATCC TATCTCTGCACTCGTTGCTGTCCAAACCTTCCTGTTTTCCCAGTTCTCTC TCATCGCCGGGTTGATTCGATATCTCTTCTCCAAGACGGAAATCAACGTG CTTATTCTGGGACTGGACTACGCAGGAAAGACTGTAAGTTTCCCAAGCCT GCCATATCATAAATATACTCCAGACTAGATACTCTCGTCTGTATATGAGG GAGTAGAACACTCCACTAGATACGTATTTTGTTCCAAGCTCGCTGCCTGG TCGCCTTATCTTGCACTTAAATTGCTACGCTGTCGGTTACATGTTGGTGC GTACAACTACAGAAACAACGTTATTGTTGCCACCGCTCTCTCTTGGGCCA GAATTTATCAACGCAACATTCGATTCAGTTTTTTCGTTGCCAAGAAATGT CCTGGGGGTGGGGGGCGGAGTAATTTCGGCATGTGTACAGTGTACGCGTG TACACCGAGCGCAAGGCTGCCGAGGTCTCGACTCGCGTATGTTGCTGTTC ACATGATAAGCTTTGGCATACGAGTGCACTGAGGAGGGCACTCGCTTTCA CGGGGGACTTGCCTGACTACATAACTTTCATCCCGTGTGCCTCACCCCAA ACTACCAGACGCTGTTGGAGCAAATGAAGGGAATATTCAAGAAGGTTCAG GGTATACCACCTTCCAAGATCCCGCCAACAGTGGGATTAAATGGTACGTC ATCTCAGCTATCCATCAGTGTTCGTACTGCACGTATGTATGTATGTATGT ATGTATGTAGATGATACGCTTGTTTGCGCGGGAACCCTTACTCTACCGTC GATATTCTGAATATCCCGTTGAACTTGATCGTGTTGGTCTGTCACCGGCG GGGGATCACCCCTGGGGGCCGTTGGTCGAAATTTAGGCTGTGTATCTGCT GCAACAGCCCTTTATGAACCCCTTTGGACATCCGCGTTGGAAGTCGATGC GCTCGCAGTTTACAGCCTTATGCCTGCCTTGCCCATGGCCTCACCTGTTT TGCGTACCAACCAACAACAGTTGGCAAGATGGACGTCGGGGGCTGCAAGC TCACTTTCTGGGACTTGGGAGGGCAGGTGAGAATTTCAGTCGTCAAAACC CAAACTTGGGGGTGCCCTGCCTGCGACCTTTCAAGCTATGTTGCAACGGT CAAGTGCACGCAGTACCTTATAGGGTGTCTCAGGAAAGGTTCTGTTACTA CTGTCAACGCGTAACTAAGAATCTGGTCATCGGCCGTCAAACCTCAAGCC GTGTCCTGAATCATTCGTCTCATGCACATTTTGTGTGTAGGTACATCTTT CGAACGCCGGGGGCTCTCCAGCGGCAGCCTTGGTGGAATCGTACATGACG TTTCGTCCGCCAGGAGAGACGTATGGATTCCCTCGGAAGTACTTGGGTGC ATAGTTTTTTGCCTCAGCAAAGAATCGTCTCAACATGTTCCAAGTACTAA CACCTGATGTTTCTTAAGCAACCCTCCCAACACATGGGGACCAACCACCC TCTACCCAGGTGCGCGTAAGATCACTGTGGGAAAAGTACTACGCTGATGC ACACGGCTTGATTTTCGTCATGGATTCTGCGGACGTCGGGAGATTCGAGG AAGCTAGAATGGCATTCGGTGAGAGGCTGTTGCCGTCCACACCCTTGCGC TGCTTGGATGTATGATCATGGGCGGGCCAAGCTGTGCTGTGGTCGCTCGC CCCAGAATTGGGCTGCGTTACAGCTTTCCACCAACAAGTTGTTTTGCCCG TGATGCCTAAAGTAGCTCGATGGCGTAGTACATCATTTTTGGTGCGGGAG TGAAAGCCCTAGGTCTCTGCTAGTTGGGAAATGGATATAATTGGTTGCGT CGTTTGGCGTGATAACATCCTATAGAATGCAGCCAAGTTGATGCACCCCT GCGCTCCATTTTACCGTTCGTTCGGCATTCGAATCGGTGGCGTTCCTGCG GTATTGCTGGCGCTGTTTTTCGATTGCAGATACCGTCAGGGAGCAAGGGG AGCTTCACGGGGTGCCGCTGATGATGCTTGCGAACAAGCAAGACCTGCCC GAGGCAATCTCGACGGCGGACATTTCTGTTCAGTTCGACATGCACAAAAT CACAAAAGTGGCGTTTCGATTACAACCATGCAGCGGGCTTACATGGTGAG CACCTTTCGCGCTGCATGAACTTGGGGCAGCCGGTGGCTAGGGAGTGAGT CTTCGTCATTTTTGGTGACTCCGAAAAAAAAACACCCTGCCAACATGTAT GCAAAGATAAAAGATGGATGGCTACAATACTGTATGTAGGTGCGTCTGAA ATTGCTCATCTTGTTATTGATGTTAAATTTACGCATACCGACCTGCCGAT AGTTTCGCATGTCTGACGCCGCTCCCTTTTCGTCCCACTGCCCTCTCCTC ATGCGGACTCCCCGGCCACCAGTGACGGGGTAGCGGAGGGGATTCATTGG ATAGTGGATGAGGCGAAAAAGCGGGCTAGACCGAGAATAGATACATAGCT ACGGCCGATCGTCCTGTGGGGAAAGTGATGAGCTGGAGTTGGTGCCTTGA GGCGCAGGCAGCATGGCGGAGAAGGACACGACCCTGGCGGCAAGCTGTAC CTACCACCTGTGTCTTTTAATCAAAGTTTTTAGCGCTTTTCTCCTCTTCT CTCTAATTGTCTGTCTGGACAAGTACATAGTCCACACGCATACTTGTATA TTTGAGCGGAACTACGACGACGAATAGAATGGCAGAAGAGTAGGCTATAG C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7547:1760..4660-

>mRNA_L-elsbetiae_contig7547.16447.1 ID=mRNA_L-elsbetiae_contig7547.16447.1|Name=mRNA_L-elsbetiae_contig7547.16447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig7547:1760..4660- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTTCTCTCTCATCGCCGGGTTGATTCGATATCTCTTCTCCAAGAC
GGAAATCAACGTGCTTATTCTGGGACTGGACTACGCAGGAAAGACTTTCT
CTCTCATCGCCGGGTTGATTCGATATCTCTTCTCCAAGACGGAAATCAAC
GTGCTTATTCTGGGACTGGACTACGCAGGAAAGACTACGCTGTTGGAGCA
AATGAAGGGAATATTCAAGAAGGTTCAGGGTATACCACCTTCCAAGATCC
CGCCAACAGTGGGATTAAATGACGCTGTTGGAGCAAATGAAGGGAATATT
CAAGAAGGTTCAGGGTATACCACCTTCCAAGATCCCGCCAACAGTGGGAT
TAAATGTTGGCAAGATGGACGTCGGGGGCTGCAAGCTCACTTTCTGGGAC
TTGGGAGGGCAGTTGGCAAGATGGACGTCGGGGGCTGCAAGCTCACTTTC
TGGGACTTGGGAGGGCAGGTGCGCGTAAGATCACTGTGGGAAAAGTACTA
CGCTGATGCACACGGCTTGATTTTCGTCATGGATTCTGCGGACGTCGGGA
GATTCGAGGAAGCTAGAATGGCATTCGGTGCGCGTAAGATCACTGTGGGA
AAAGTACTACGCTGATGCACACGGCTTGATTTTCGTCATGGATTCTGCGG
ACGTCGGGAGATTCGAGGAAGCTAGAATGGCATTCGATACCGTCAGGGAG
CAAGGGGAGCTTCACGGGGTGCCGCTGATGATGCTTGCGAACAAGCAAGA
CCTGCCCGAGGCAATCTCGACGGCGGACATTTCTGTTCAGTTCGACATGC
ACAAAATCACAAAAGTGGCGTTTCGATTACAACCATGCAGCGGGCTTACA
TGATACCGTCAGGGAGCAAGGGGAGCTTCACGGGGTGCCGCTGATGATGC
TTGCGAACAAGCAAGACCTGCCCGAGGCAATCTCGACGGCGGACATTTCT
GTTCAGTTCGACATGCACAAAATCACAAAAGTGGCGTTTCGATTACAACC
ATGCAGCGGGCTTACATGTGACGGGGTAGCGGAGGGGATTCATTGGATAG
TGGATGAGGCGAAAAAGCGGGCTAGACCGAGAATAGATACATAGTGACGG
GGTAGCGGAGGGGATTCATTGGATAGTGGATGAGGCGAAAAAGCGGGCTA
GACCGAGAATAGATACATAG
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