mRNA_L-elsbetiae_contig7544.16443.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7544.16443.1
Unique NamemRNA_L-elsbetiae_contig7544.16443.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: D7FLE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE0_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.320e-50
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  157 NALHDSDDGDDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIKNENSK 402
            NA +DSDDGDDAVCPLCCE MDLSDKNF+PCPCGYRVCMWCWHRIKENYT LCPACRSEYADDPHAFAAVDKEEVIKNEN+K
Sbjct:    5 NAFNDSDDGDDAVCPLCCEPMDLSDKNFVPCPCGYRVCMWCWHRIKENYTGLCPACRSEYADDPHAFAAVDKEEVIKNENNK 86
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A6H5JC61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC61_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.910e-48
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  157 NALHDSDDGDDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIKNENSK 402
            NA +DSDDGDDAVCPLCCE MDLSDKNF+PCPCGYRVCMWCWHRIKENYT LCPACRSEYADDPHAFAAVDKEEVIKNEN+K
Sbjct:    5 NAFNDSDDGDDAVCPLCCEPMDLSDKNFVPCPCGYRVCMWCWHRIKENYTGLCPACRSEYADDPHAFAAVDKEEVIKNENNK 86
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.290e-35
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:  169 DSD-DGDDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIKNENSK 402
            DSD D +D VCPLCCE +DLSDKNFLPC CGYRVC+WCWH IK++   LCPACR+ Y+DDPHAFAAVD+++VIK+E  K
Sbjct:    4 DSDNDSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRK 82
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A8J2SPL8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPL8_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.180e-33
Identity = 50/71 (70.42%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:  178 DGDDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIKN 390
            D D+ VCPLCCE +D+SD+NFLPC CGY+VCMWCWH IKEN  NLCPACR+ Y D+PHAF+AV+KEE+++N
Sbjct:    3 DSDEQVCPLCCEELDISDQNFLPCKCGYQVCMWCWHHIKENLNNLCPACRNPYHDNPHAFSAVEKEEIMRN 73
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A7S3NFX2_9STRA (Hypothetical protein n=4 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFX2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.460e-33
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:  160 ALHDSDDGDDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIKNENSK 402
            A  D  D DD  CPLCCE +DLSD+NFLPC CGY+VCM+CW+RIKEN   LCPACR+ YADDPHAFAAVD+ EVIKN+  +
Sbjct:    2 AFGDDFDDDDLTCPLCCEELDLSDQNFLPCKCGYQVCMFCWYRIKENSNGLCPACRTPYADDPHAFAAVDRNEVIKNKKER 82
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A7S2R121_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R121_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.220e-32
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  184 DDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIKNENSK 402
            D+ VCPLCCE +D+SD  F PC CGY+VCMWCWHRIKE+   LCPACR+ Y DDPH F+AVD EEV+K    K
Sbjct:    3 DNDVCPLCCEELDISDLQFFPCKCGYQVCMWCWHRIKESECGLCPACRTPYGDDPHEFSAVDMEEVVKANKEK 75
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A482RU21_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU21_9ARCH)

HSP 1 Score: 119 bits (298), Expect = 5.860e-32
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:  175 DDGDDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEE 378
            DD D   CPLC E +D SDKNFLPCPCGY+VCMWCWH I+EN   LCPACR+ Y+ DPHAFAAVD+ E
Sbjct:    7 DDADSLYCPLCVEEIDQSDKNFLPCPCGYQVCMWCWHHIRENLNGLCPACRTPYSADPHAFAAVDRTE 74
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 130 bits (326), Expect = 7.070e-32
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:  184 DDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIK 387
            +D  CPLCCE +DLSDKNF+PCPCGYRVCMWCWH IKEN   LCPACRS YADDPHAFAAV  EEV++
Sbjct:   19 EDDNCPLCCEELDLSDKNFVPCPCGYRVCMWCWHHIKENLNGLCPACRSPYADDPHAFAAVATEEVVE 86
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.200e-31
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:  178 DGDDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIKNENSK 402
            D DD VCPLCCE +D+SDKNF+PC CGY+VCMWCWH IK +   LCPACR+ Y+DDPHAF+AVD++EV+K    K
Sbjct:    3 DSDDDVCPLCCEELDISDKNFMPCRCGYQVCMWCWHHIKNDLNGLCPACRTPYSDDPHAFSAVDRQEVLKQTRQK 77
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BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Match: A0A1E7EU92_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EU92_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.310e-30
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:  193 VCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKENYTNLCPACRSEYADDPHAFAAVDKEEVIKNENSK 402
            VCPLCCE +D+SD+ F PC CGY+VCMWCWHRI+E+ + LCPACR+ Y DDPH F+AVD EEV+K    K
Sbjct:    1 VCPLCCEELDISDRQFFPCKCGYQVCMWCWHRIRESESGLCPACRTPYGDDPHEFSAVDVEEVLKANKEK 70
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7544.16443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLE0_ECTSI2.320e-5092.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC61_9PHAE2.910e-4892.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKN6_9STRA1.290e-3570.89RING/Ubox like zinc-binding domain-containing prot... [more]
A0A8J2SPL8_9STRA3.180e-3370.42Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NFX2_9STRA4.460e-3369.14Hypothetical protein n=4 Tax=Aureoumbra lagunensis... [more]
A0A7S2R121_9STRA5.220e-3265.75Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A482RU21_9ARCH5.860e-3270.59RING-type domain-containing protein n=1 Tax=archae... [more]
A0A7S4D5P1_HETAK7.070e-3277.94Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2GN38_9STRA4.200e-3166.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1E7EU92_9STRA2.310e-3065.71RING-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7544contigL-elsbetiae_contig7544:1361..2566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue1.3e-41
Seed eggNOG ortholog2880.D7FLE0
KEGG koko:K10643
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0002682,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019222,GO:0019439,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0023052,GO:0030163,GO:0030330,GO:0031570,GO:0031571,GO:0032446,GO:0033554,GO:0034641,GO:0034655,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045595,GO:0045637,GO:0045652,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0051726,GO:0051865,GO:0060255,GO:0065007,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903706,GO:2000026,GO:2000045,GO:2000134
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5175@1,KOG2068@2759
EC2.3.2.27
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Ec32 ortholog descriptionRNA recognition motif domain, eukaryote
Ec32 orthologEc-12_007800.1
Exons2
Model size574
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.5885265-CDS-L-elsbetiae_contig7544:1362..18511622816838.5885265-CDS-L-elsbetiae_contig7544:1362..1851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7544 1363..1851 -
1691683852.1570296-CDS-L-elsbetiae_contig7544:1362..18511691683852.1570296-CDS-L-elsbetiae_contig7544:1362..1851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7544 1363..1851 -
1622816838.5990899-CDS-L-elsbetiae_contig7544:2485..25661622816838.5990899-CDS-L-elsbetiae_contig7544:2485..2566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7544 2486..2566 -
1691683852.176068-CDS-L-elsbetiae_contig7544:2485..25661691683852.176068-CDS-L-elsbetiae_contig7544:2485..2566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7544 2486..2566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7544.16443.1prot_L-elsbetiae_contig7544.16443.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7544 1363..2566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7544.16443.1

>prot_L-elsbetiae_contig7544.16443.1 ID=prot_L-elsbetiae_contig7544.16443.1|Name=mRNA_L-elsbetiae_contig7544.16443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
SFSPPFSARRQRCFATSWYRSNVVPPQSPRPEGVARVSNRSSSHSNIVTM
SGNALHDSDDGDDAVCPLCCEAMDLSDKNFLPCPCGYRVCMWCWHRIKEN
YTNLCPACRSEYADDPHAFAAVDKEEVIKNENSKKKRAKQKDTDSAGAAA
AAAAAREHQHALHLRHHHQHQQHMQHLHREQVQQQGGGRG
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mRNA from alignment at L-elsbetiae_contig7544:1361..2566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7544.16443.1 ID=mRNA_L-elsbetiae_contig7544.16443.1|Name=mRNA_L-elsbetiae_contig7544.16443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig7544:1361..2566- (Laminarionema elsbetiae ELsaHSoW15)
TCCTTTTCCCCTCCATTCTCAGCGCGGCGGCAGAGGTGCTTTGCCACCTC
CTGGTACCGTTCAAACGTCGTACCTCCACAGGTGAGCCGGGGACACCTTG
TGCGAATGTCGTGGAGTTATTTTGCGAGACCCGCCATGAATTTAATCGCA
AAAACAGAGGCCAGGAATCAAACGCTTTGCGAGGACGTGGTGTCCTCTTT
CTTTTTTGCTCTTGCCACCCTGACGTCCATCTCCCTATCATGTGCAGAGC
AACTGAAGCTAATGTAAAGCGACCAACAACCTGCTACCCAAGGTTTACTG
AGCTGGGTTTTCGTGAGTGAAAATGAGGTAGCGCACACAGGCTGTCTCCC
CCCTCACACAGCCTCAGCCTGGGTTGGTGTGTCTCTGCAAAAGTGCTGGC
GAGGAGCGGAGAAAGCGAGAGAAAGAAAGAAAGAAAGAGACTTTAAACCC
GCGCACCACCGGGGGATTGGCTTGGCCGTGCGTCATATCCCGAGACCGTG
ACTGGTACCTTCGACTCGAATCACCCGTTATCTCCCGAAATGGGCAGTTT
GACTCGTGTGTATCCATCCCTGGAATTCTCCCCCCCCCCCCCTGTGACAC
ACTTACATACTACATTCTGCTCCCCGTGCATAATTTGACCCCGACCCTGA
CTGCAACACAACGGTCTCTATCTTTTATTCTATTCTGCTGCGCCACGGTC
GCATGCATGGTGCAGTCACCGCGGCCGGAGGGCGTTGCTCGGGTCAGCAA
CAGGAGCAGCAGCCACAGCAACATCGTCACAATGTCCGGAAATGCCCTCC
ACGACTCGGACGACGGAGACGATGCCGTCTGCCCCCTCTGCTGCGAGGCC
ATGGACCTCTCGGACAAGAACTTCCTCCCGTGCCCGTGCGGGTACCGGGT
GTGCATGTGGTGCTGGCACCGCATCAAGGAGAACTACACCAACCTCTGCC
CCGCGTGCCGGTCCGAGTACGCAGACGACCCCCACGCCTTCGCCGCGGTG
GACAAGGAAGAGGTCATCAAGAACGAGAACAGCAAGAAGAAGCGGGCCAA
GCAGAAAGACACCGACTCGGCCGGCGCGGCGGCCGCGGCCGCGGCGGCTC
GGGAGCACCAGCACGCCCTGCACCTCAGGCACCACCACCAACACCAGCAA
CACATGCAGCACTTGCATCGGGAACAGGTGCAGCAGCAGGGCGGGGGCAG
GGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7544:1361..2566-

>mRNA_L-elsbetiae_contig7544.16443.1 ID=mRNA_L-elsbetiae_contig7544.16443.1|Name=mRNA_L-elsbetiae_contig7544.16443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig7544:1361..2566- (Laminarionema elsbetiae ELsaHSoW15)
TCCTTTTCCCCTCCATTCTCAGCGCGGCGGCAGAGGTGCTTTGCCACCTC
CTGGTACCGTTCAAACGTCGTACCTCCACAGTCCTTTTCCCCTCCATTCT
CAGCGCGGCGGCAGAGGTGCTTTGCCACCTCCTGGTACCGTTCAAACGTC
GTACCTCCACAGTCACCGCGGCCGGAGGGCGTTGCTCGGGTCAGCAACAG
GAGCAGCAGCCACAGCAACATCGTCACAATGTCCGGAAATGCCCTCCACG
ACTCGGACGACGGAGACGATGCCGTCTGCCCCCTCTGCTGCGAGGCCATG
GACCTCTCGGACAAGAACTTCCTCCCGTGCCCGTGCGGGTACCGGGTGTG
CATGTGGTGCTGGCACCGCATCAAGGAGAACTACACCAACCTCTGCCCCG
CGTGCCGGTCCGAGTACGCAGACGACCCCCACGCCTTCGCCGCGGTGGAC
AAGGAAGAGGTCATCAAGAACGAGAACAGCAAGAAGAAGCGGGCCAAGCA
GAAAGACACCGACTCGGCCGGCGCGGCGGCCGCGGCCGCGGCGGCTCGGG
AGCACCAGCACGCCCTGCACCTCAGGCACCACCACCAACACCAGCAACAC
ATGCAGCACTTGCATCGGGAACAGGTGCAGCAGCAGGGCGGGGGCAGGGG
CTCACCGCGGCCGGAGGGCGTTGCTCGGGTCAGCAACAGGAGCAGCAGCC
ACAGCAACATCGTCACAATGTCCGGAAATGCCCTCCACGACTCGGACGAC
GGAGACGATGCCGTCTGCCCCCTCTGCTGCGAGGCCATGGACCTCTCGGA
CAAGAACTTCCTCCCGTGCCCGTGCGGGTACCGGGTGTGCATGTGGTGCT
GGCACCGCATCAAGGAGAACTACACCAACCTCTGCCCCGCGTGCCGGTCC
GAGTACGCAGACGACCCCCACGCCTTCGCCGCGGTGGACAAGGAAGAGGT
CATCAAGAACGAGAACAGCAAGAAGAAGCGGGCCAAGCAGAAAGACACCG
ACTCGGCCGGCGCGGCGGCCGCGGCCGCGGCGGCTCGGGAGCACCAGCAC
GCCCTGCACCTCAGGCACCACCACCAACACCAGCAACACATGCAGCACTT
GCATCGGGAACAGGTGCAGCAGCAGGGCGGGGGCAGGGGC
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