mRNA_L-elsbetiae_contig7540.16441.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7540.16441.1
Unique NamemRNA_L-elsbetiae_contig7540.16441.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7540.16441.1 vs. uniprot
Match: D7FMH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH1_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.190e-41
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:    1 IEAGWGENYDREWDMLTNCMGMAIEEERIIRVKISKLELDLQILKLEIDDQEEDLDASCTREFDRMEALRRMEISRGLGLARRDRIRAVRREKMRWAV 294
            + AGWGENY+REWDMLTNCMGMA EEE+I+RVKI+KLE DLQ+LKLEIDDQE D+DAS  RE  RMEALRRMEI+RGL  A RDR RAVRREKMRWAV
Sbjct:  137 MAAGWGENYEREWDMLTNCMGMAFEEEKIMRVKIAKLEQDLQVLKLEIDDQEADMDASSCREASRMEALRRMEITRGLNQAARDRSRAVRREKMRWAV 234
[Close]
BLAST of mRNA_L-elsbetiae_contig7540.16441.1 vs. uniprot
Match: A0A6H5KAU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.760e-25
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:   43 MLTNCMGMAIEEERIIRVKISKLELDLQILKLEIDDQEEDLDASCTREFDRMEALRRMEISRGLGLARRDRIRAVRREKMRWAV 294
            MLTNCMGMA EE++I+RVKI+K E DLQ+LKLE D     +DAS  RE  RMEALRRMEI+RGL  A RDR RAVR EKMRWAV
Sbjct:    1 MLTNCMGMAFEEDKIMRVKIAKFEQDLQVLKLEAD-----MDASSCREASRMEALRRMEITRGLNQAARDRSRAVRLEKMRWAV 79
[Close]
BLAST of mRNA_L-elsbetiae_contig7540.16441.1 vs. uniprot
Match: A0A836CFR1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.680e-13
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    4 EAGWGENYDREWDMLTNCMGMAIEEERIIRVKISKLELDLQILKLEIDDQEEDLDASCTREFDRMEALRRMEISRGLGLARRDRIRAVRREKMRW 288
            E GW ENYD+E+D +TN + M  EE+R++RV   +   +L  L  E +D   DLDA+   + D  + LRR+E++R +  ARRD+    RRE+ RW
Sbjct:  169 EQGWAENYDKEYDAITNSIKMTQEEQRLLRVVERQRLENLMDLHAEAEDLHCDLDANAVHQMDLADILRRLELARAIDAARRDKQERTRRERARW 263
[Close]
BLAST of mRNA_L-elsbetiae_contig7540.16441.1 vs. uniprot
Match: A0A067BRP5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRP5_SAPPC)

HSP 1 Score: 50.8 bits (120), Expect = 3.750e-5
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 IEAGWGENYDREWDMLTNCMGMAIEEERIIRVKISKLELDLQILKLEIDDQEEDLDASCTREFDRMEALRRMEISRGLGLARRDRIRAVRREKMRWAV 294
            +  GW E ++ E  ++     ++ EE    R +I + + +++ L++E++D E D D     E   +E LRR+E+SR LGL   D   AVRR+++RW V
Sbjct:  791 VGRGWAEAFETEKVVIHFSRLLSAEEILSKRQQIREYDHEIEALQMELEDLERDRDEFLMDETLEIEGLRRLELSRALGLYDADTKTAVRRQRVRWKV 888
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7540.16441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMH1_ECTSI1.190e-4179.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAU5_9PHAE8.760e-2570.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFR1_9STRA3.680e-1342.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067BRP5_SAPPC3.750e-533.67Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7540contigL-elsbetiae_contig7540:90..886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue4.5e-11
Seed eggNOG ortholog44056.XP_009041122.1
KEGG koko:K16743
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs29C0P@1,2RJ48@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.4123673-CDS-L-elsbetiae_contig7540:89..2301622816838.4123673-CDS-L-elsbetiae_contig7540:89..230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7540 90..230 +
1691683852.0056405-CDS-L-elsbetiae_contig7540:89..2301691683852.0056405-CDS-L-elsbetiae_contig7540:89..230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7540 90..230 +
1622816838.4249787-CDS-L-elsbetiae_contig7540:733..8861622816838.4249787-CDS-L-elsbetiae_contig7540:733..886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7540 734..886 +
1691683852.0175965-CDS-L-elsbetiae_contig7540:733..8861691683852.0175965-CDS-L-elsbetiae_contig7540:733..886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7540 734..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7540.16441.1prot_L-elsbetiae_contig7540.16441.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7540 90..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7540.16441.1

>prot_L-elsbetiae_contig7540.16441.1 ID=prot_L-elsbetiae_contig7540.16441.1|Name=mRNA_L-elsbetiae_contig7540.16441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
IEAGWGENYDREWDMLTNCMGMAIEEERIIRVKISKLELDLQILKLEIDD
QEEDLDASCTREFDRMEALRRMEISRGLGLARRDRIRAVRREKMRWAV
back to top

mRNA from alignment at L-elsbetiae_contig7540:90..886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7540.16441.1 ID=mRNA_L-elsbetiae_contig7540.16441.1|Name=mRNA_L-elsbetiae_contig7540.16441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=797bp|location=Sequence derived from alignment at L-elsbetiae_contig7540:90..886+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGAAGCTGGATGGGGGGAGAACTACGATAGAGAGTGGGACATGCTGAC
GAACTGCATGGGTATGGCTATCGAAGAGGAGAGAATCATTCGAGTCAAGA
TCTCCAAGCTCGAGCTGGACCTGCAAATTCTCAAGCTTGAGGTGGGGCGT
CATTGTTAGTGCCCTCGGTAGCGTTGGTTGTTACGTTGTTGTTGTTGTTG
TTGTTGTTGTAGTTGTTGTTGTTGTTGTTGTTGTTGTTCGCTTTTGTGTT
GTCGCTTTCGTTGCTGTGGTTGTTATCACCGTTGTTGTGCTCGCTGCAGT
GTCGGCTTCGCCCTCTTAATCTCCAGGCGTTCCTCCTCTCTGCGTTCAGG
TACATACATATAGGTCCCTATTTTTGGAGTGTGTTTTAAGATAACTTGAG
TGGATCAATTCAACAAAAAAAAACAGGAGAATATCCCTCTGAATTTCTTC
TGACCCCCACACACAGGCAAACAGCCACCACGCACCCAAAGCAGAAGACA
ACGGACGACGNNNNNNNNNNTGTTTTTAAAAAAAAATGAAGTGTATAAAA
AAAAAAAAAAAAAACAGGAGAATCTCCCCCTGTTTTTTTTCTCCCCCCCC
CCCCCCCCCCCCCGCTGTGAAAAACGCCAACAATGGGAGAAAAGATCGAC
GATCAAGAAGAAGATTTGGACGCATCGTGCACGAGGGAGTTCGACCGCAT
GGAGGCGCTACGCCGGATGGAGATATCGAGAGGTCTCGGGCTGGCGAGGC
GGGACAGAATCAGGGCCGTCCGCCGAGAAAAAATGCGCTGGGCTGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7540:90..886+

>mRNA_L-elsbetiae_contig7540.16441.1 ID=mRNA_L-elsbetiae_contig7540.16441.1|Name=mRNA_L-elsbetiae_contig7540.16441.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig7540:90..886+ (Laminarionema elsbetiae ELsaHSoW15)
ATCGAAGCTGGATGGGGGGAGAACTACGATAGAGAGTGGGACATGCTGAC
GAACTGCATGGGTATGGCTATCGAAGAGGAGAGAATCATTCGAGTCAAGA
TCTCCAAGCTCGAGCTGGACCTGCAAATTCTCAAGCTTGAGATCGAAGCT
GGATGGGGGGAGAACTACGATAGAGAGTGGGACATGCTGACGAACTGCAT
GGGTATGGCTATCGAAGAGGAGAGAATCATTCGAGTCAAGATCTCCAAGC
TCGAGCTGGACCTGCAAATTCTCAAGCTTGAGATCGACGATCAAGAAGAA
GATTTGGACGCATCGTGCACGAGGGAGTTCGACCGCATGGAGGCGCTACG
CCGGATGGAGATATCGAGAGGTCTCGGGCTGGCGAGGCGGGACAGAATCA
GGGCCGTCCGCCGAGAAAAAATGCGCTGGGCTGTGATCGACGATCAAGAA
GAAGATTTGGACGCATCGTGCACGAGGGAGTTCGACCGCATGGAGGCGCT
ACGCCGGATGGAGATATCGAGAGGTCTCGGGCTGGCGAGGCGGGACAGAA
TCAGGGCCGTCCGCCGAGAAAAAATGCGCTGGGCTGTG
back to top