mRNA_L-elsbetiae_contig7535.16436.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7535.16436.1
Unique NamemRNA_L-elsbetiae_contig7535.16436.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: D7G9H7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.020e-21
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1
Query:    1 SCSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGHRVCPCCR 129
            SCSVCL++YEEGD+LLQ+TCGHVFHR CI+HWLK HRVCPCCR
Sbjct:  192 SCSVCLDDYEEGDELLQVTCGHVFHRACIDHWLKAHRVCPCCR 234          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: A0A6H5JXK0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.620e-21
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    1 SCSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGHRVCPCCR 129
            SCSVCL++YEEGD+LLQ+TCGHVFHR CI+HWL  HRVCPCCR
Sbjct:  272 SCSVCLDDYEEGDELLQVTCGHVFHRACIDHWLMAHRVCPCCR 314          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: A0A7S4LJF0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LJF0_9EUGL)

HSP 1 Score: 73.6 bits (179), Expect = 3.880e-14
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    4 CSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGHRVCPCCR 129
            CSVCL+EY  GD++++  CGH FH+ C+EHWLK   VCPCCR
Sbjct: 1435 CSVCLDEYTAGDEVMEYICGHRFHKQCLEHWLKDSFVCPCCR 1476          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: A0A7S2BFF5_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2BFF5_9DINO)

HSP 1 Score: 69.3 bits (168), Expect = 7.280e-13
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 SCSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGHRVCPCC 126
            SC+VCL E+E GD + QL CGH FHR CI+ WLK ++VCP C
Sbjct:  232 SCAVCLSEFERGDMMRQLPCGHNFHRACIDKWLKRNKVCPLC 273          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: UPI0020088C57 (uncharacterized protein n=2 Tax=Purpureocillium takamizusanense TaxID=2060973 RepID=UPI0020088C57)

HSP 1 Score: 67.8 bits (164), Expect = 1.300e-12
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 SCSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGH-RVCPCCR 129
            SCS+C E++ EGD+L +LTCGH+FH PCI+ WL+   R CP CR
Sbjct:  150 SCSICTEDFVEGDELRRLTCGHLFHMPCIDPWLQDRARTCPLCR 193          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: A0A7S1MQG9_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MQG9_NEODS)

HSP 1 Score: 68.2 bits (165), Expect = 1.750e-12
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    4 CSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGHRVCPCCR 129
            C+VC+E+Y +GD L+ L CGHV+H PCI  WL  H+ CP CR
Sbjct:  140 CAVCVEDYVDGDDLVALVCGHVYHDPCIREWLVKHKECPLCR 181          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: A0A7S0UQL3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UQL3_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 2.250e-12
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 SCSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLK-GHRVCPCCR 129
            +CSVCL+ +  GD++++LTCGH FH PC+  WL+ GH  CP CR
Sbjct:  353 TCSVCLDTFSSGDEVIELTCGHCFHEPCVSRWLRSGHASCPVCR 396          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: A0A4D9B7G1_SALSN (RING-type domain-containing protein n=2 Tax=Salvia TaxID=21880 RepID=A0A4D9B7G1_SALSN)

HSP 1 Score: 65.9 bits (159), Expect = 2.370e-12
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    4 CSVCLEEYEEGDQLLQLT-CGHVFHRPCIEHWLKGHRV-CPCCR 129
            CSVCL E+E GD+ ++L  CGHVFHR C+E WL+ HR  CP CR
Sbjct:   67 CSVCLSEFEPGDEAMELVDCGHVFHRSCLEKWLRWHRATCPLCR 110          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: A0A7S1QQM9_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QQM9_ALECA)

HSP 1 Score: 64.3 bits (155), Expect = 2.650e-12
Identity = 21/43 (48.84%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 SCSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGHRVCPCCR 129
            +C +C+E++EEGD+L  L C H+FH  C++ WLK + +CP CR
Sbjct:   53 NCQICMEDFEEGDELRTLPCFHLFHSKCVDQWLKVNSICPTCR 95          
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Match: A0A7S3V8L6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8L6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.210e-12
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    1 SCSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGHRVCPCC 126
            SC +CL EYEEGD L Q+ CGHV+H+ CI+ W K H  CP C
Sbjct:  450 SCCICLCEYEEGDMLNQMKCGHVYHKECIDSWCKNHTRCPLC 491          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7535.16436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9H7_ECTSI1.020e-2183.72RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXK0_9PHAE6.620e-2181.40RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S4LJF0_9EUGL3.880e-1461.90Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2BFF5_9DINO7.280e-1361.90Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
UPI0020088C571.300e-1259.09uncharacterized protein n=2 Tax=Purpureocillium ta... [more]
A0A7S1MQG9_NEODS1.750e-1257.14Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
A0A7S0UQL3_9CHLO2.250e-1254.55Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A4D9B7G1_SALSN2.370e-1261.36RING-type domain-containing protein n=2 Tax=Salvia... [more]
A0A7S1QQM9_ALECA2.650e-1248.84Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S3V8L6_9STRA4.210e-1259.52Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7535contigL-elsbetiae_contig7535:7238..7366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D7G9H7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.7641068-CDS-L-elsbetiae_contig7535:7237..73661622816837.7641068-CDS-L-elsbetiae_contig7535:7237..7366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7535 7238..7366 +
1691683851.5042894-CDS-L-elsbetiae_contig7535:7237..73661691683851.5042894-CDS-L-elsbetiae_contig7535:7237..7366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7535 7238..7366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7535.16436.1prot_L-elsbetiae_contig7535.16436.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7535 7238..7366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7535.16436.1

>prot_L-elsbetiae_contig7535.16436.1 ID=prot_L-elsbetiae_contig7535.16436.1|Name=mRNA_L-elsbetiae_contig7535.16436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=43bp
SCSVCLEEYEEGDQLLQLTCGHVFHRPCIEHWLKGHRVCPCCR
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mRNA from alignment at L-elsbetiae_contig7535:7238..7366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7535.16436.1 ID=mRNA_L-elsbetiae_contig7535.16436.1|Name=mRNA_L-elsbetiae_contig7535.16436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=129bp|location=Sequence derived from alignment at L-elsbetiae_contig7535:7238..7366+ (Laminarionema elsbetiae ELsaHSoW15)
TCTTGCTCCGTTTGCCTGGAGGAGTACGAGGAGGGCGACCAGCTGCTGCA GCTCACTTGCGGTCACGTTTTCCATCGGCCGTGCATCGAGCACTGGTTAA AGGGGCACCGTGTTTGCCCTTGCTGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7535:7238..7366+

>mRNA_L-elsbetiae_contig7535.16436.1 ID=mRNA_L-elsbetiae_contig7535.16436.1|Name=mRNA_L-elsbetiae_contig7535.16436.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=258bp|location=Sequence derived from alignment at L-elsbetiae_contig7535:7238..7366+ (Laminarionema elsbetiae ELsaHSoW15)
TCTTGCTCCGTTTGCCTGGAGGAGTACGAGGAGGGCGACCAGCTGCTGCA
GCTCACTTGCGGTCACGTTTTCCATCGGCCGTGCATCGAGCACTGGTTAA
AGGGGCACCGTGTTTGCCCTTGCTGCAGGTCTTGCTCCGTTTGCCTGGAG
GAGTACGAGGAGGGCGACCAGCTGCTGCAGCTCACTTGCGGTCACGTTTT
CCATCGGCCGTGCATCGAGCACTGGTTAAAGGGGCACCGTGTTTGCCCTT
GCTGCAGG
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