mRNA_L-elsbetiae_contig7535.16435.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7535.16435.1
Unique NamemRNA_L-elsbetiae_contig7535.16435.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7535.16435.1 vs. uniprot
Match: A0A6H5JXK0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK0_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.080e-29
Identity = 74/98 (75.51%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 LEAEADMERQQALAEAVVRQMDTHELVAIASGRFGAGG-LLSRGRGRLSHR-SQAEQTAGVSQETRMSFIKLSAGRRSYAPSHGVAAAVTQPPATAAT 288
            L+ E  MERQQALAEAVVRQMDTHELVAIASGRFG+GG LLSRGRGR + R  QAEQTAGVSQETRMSF+KLSAG+R +AP+H V A    PP+TA T
Sbjct:   32 LQPEGYMERQQALAEAVVRQMDTHELVAIASGRFGSGGGLLSRGRGRATRRFQQAEQTAGVSQETRMSFVKLSAGKRGHAPAHDVTA---PPPSTAVT 126
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BLAST of mRNA_L-elsbetiae_contig7535.16435.1 vs. uniprot
Match: D7G9H7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H7_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.790e-28
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:   19 MERQQALAEAVVRQMDTHELVAIASGRFGAGG-LLSRGRGRLSHR-SQAEQTAGVSQETRMSFIKLSAGRRSYAPSHGVAA 255
            MERQQALAEAVVRQMDTHELVAIASGRFG+GG LLSRGRGR S R  QAEQTAGVSQETRMSF+KLSAG+R  AP+H V A
Sbjct:    1 MERQQALAEAVVRQMDTHELVAIASGRFGSGGGLLSRGRGRASRRFQQAEQTAGVSQETRMSFVKLSAGKRGLAPAHDVTA 81
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7535.16435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXK0_9PHAE1.080e-2975.51RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G9H7_ECTSI7.790e-2883.95RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7535contigL-elsbetiae_contig7535:5622..6979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue3.2e-24
Seed eggNOG ortholog2880.D7G9H7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-28_000960.1
Exons2
Model size358
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7535.16435.1prot_L-elsbetiae_contig7535.16435.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7535 5640..6979 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.7127504-UTR-L-elsbetiae_contig7535:5621..56391622816837.7127504-UTR-L-elsbetiae_contig7535:5621..5639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7535 5622..5639 +
1691683851.4679518-UTR-L-elsbetiae_contig7535:5621..56391691683851.4679518-UTR-L-elsbetiae_contig7535:5621..5639Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7535 5622..5639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.7239249-CDS-L-elsbetiae_contig7535:5639..58041622816837.7239249-CDS-L-elsbetiae_contig7535:5639..5804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7535 5640..5804 +
1691683851.4804654-CDS-L-elsbetiae_contig7535:5639..58041691683851.4804654-CDS-L-elsbetiae_contig7535:5639..5804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7535 5640..5804 +
1622816837.7343214-CDS-L-elsbetiae_contig7535:6805..69791622816837.7343214-CDS-L-elsbetiae_contig7535:6805..6979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7535 6806..6979 +
1691683851.4928274-CDS-L-elsbetiae_contig7535:6805..69791691683851.4928274-CDS-L-elsbetiae_contig7535:6805..6979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7535 6806..6979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7535.16435.1

>prot_L-elsbetiae_contig7535.16435.1 ID=prot_L-elsbetiae_contig7535.16435.1|Name=mRNA_L-elsbetiae_contig7535.16435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MERQQALAEAVVRQMDTHELVAIASGRFGAGGLLSRGRGRLSHRSQAEQT
AGVSQETRMSFIKLSAGRRSYAPSHGVAAAVTQPPATAATVAPAVTIIMS
NPDDGERKSRQAI
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mRNA from alignment at L-elsbetiae_contig7535:5622..6979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7535.16435.1 ID=mRNA_L-elsbetiae_contig7535.16435.1|Name=mRNA_L-elsbetiae_contig7535.16435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1358bp|location=Sequence derived from alignment at L-elsbetiae_contig7535:5622..6979+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGAAGCGGAGGCTGACATGGAGCGCCAGCAGGCCCTGGCCGAGGCAGT
GGTGAGACAAATGGACACGCACGAGCTGGTGGCCATCGCCTCCGGACGAT
TCGGCGCGGGCGGCCTGCTGTCGAGAGGGAGGGGCCGGCTATCCCATCGT
TCCCAGGCGGAGCAGACAGCCGGGGTCAGCCAGGTACGTCGACGTACGTA
CGTCACTACTACGTATGGTATATATTTACTGGTGGTCTAGGTGGATCCCC
GAGCACCTTGCAGCAGGTAGGTCACGGGTTCGAAACCCGGCGGGAGCGAC
CTTTTCTTGCAAAATAAGTTTTTTCTCTCGCTTTCGTCCCTGTCAGTGGA
TAACGCTTAGCGTGTGTACACAAACTTCGACCTCACCGTCGACGAGGGAA
AGGGGTTCCTGAACCCTTCTCGATAAAAATATTAGACACGCACCGCAGGA
GGGGGACGTGGGGGCCTCGGGGAGAGGAACCCTTCTGTGTGACCACGGGT
CAGTACCCTGGCAAAATGTCCTTCGTGGTAAGGAGCCTCTAGTGCTAGCT
AGCAATAGCAATAGATGTGAAGACAATAAAAAAATGAAAGAGATGTGGGG
GGCAAAGAATCGCACCGCACCGCAGAACGTTTTTTTGACCCTCCGGTGGA
CCGCCGCACACAACTTGCGGGGTCATTGGTGTGTCTTTTCACCCGCGCGC
CCTACCATCATCTCAACTCTCGGCGTGGGTGGAGTTCGAAGGTCTGCTTC
GCTTCTCTTGGTTTTGACATGTCCGTGGCGAGGACGAAATCGCCCCGGCA
ACAAAAATCGCGCCCGGGTTTAGTAGAAGTTCGGCCAGGCCAGTCGGCCT
TCATCCCGTCTGAAGGCCGCCCAGCGCCACCATTTACCACCCCACCTGCA
ACGCTCTGTGTACGCGCGACCTTGTGGGTTTCTTTCGTCGCGTGTTTGTT
CTCTGCCGGCGTTTTTTTTGTTTCCCGACGCTCAATCGGTGTGTTGGGTT
CCTTCCGCTTGCCGTTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCGCCGCCCCCCGCCNNNNNNNNNNTTTGTGCGCGGCCCGGGT
TTTTTTTTTTCCCCCCCCCCCCCTCGGGGTGTCGGGTCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCGCCCGTAGGAGACCCGGATGTCGT
TCATCAAGCTTTCGGCAGGACGAAGGAGCTACGCCCCCTCTCACGGCGTC
GCCGCAGCAGTTACGCAGCCGCCCGCTACTGCTGCTACTGTTGCGCCAGC
AGTAACAATAATAATGTCGAATCCTGACGATGGGGAACGGAAGAGCCGAC
AGGCTATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7535:5622..6979+

>mRNA_L-elsbetiae_contig7535.16435.1 ID=mRNA_L-elsbetiae_contig7535.16435.1|Name=mRNA_L-elsbetiae_contig7535.16435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig7535:5622..6979+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGCCAGCAGGCCCTGGCCGAGGCAGTGGTGAGACAAATGGACAC
GCACGAGCTGGTGGCCATCGCCTCCGGACGATTCGGCGCGGGCGGCCTGC
TGTCGAGAGGGAGGGGCCGGCTATCCCATCGTTCCCAGGCGGAGCAGACA
GCCGGGGTCAGCCAGATGGAGCGCCAGCAGGCCCTGGCCGAGGCAGTGGT
GAGACAAATGGACACGCACGAGCTGGTGGCCATCGCCTCCGGACGATTCG
GCGCGGGCGGCCTGCTGTCGAGAGGGAGGGGCCGGCTATCCCATCGTTCC
CAGGCGGAGCAGACAGCCGGGGTCAGCCAGGAGACCCGGATGTCGTTCAT
CAAGCTTTCGGCAGGACGAAGGAGCTACGCCCCCTCTCACGGCGTCGCCG
CAGCAGTTACGCAGCCGCCCGCTACTGCTGCTACTGTTGCGCCAGCAGTA
ACAATAATAATGTCGAATCCTGACGATGGGGAACGGAAGAGCCGACAGGC
TATTGAGACCCGGATGTCGTTCATCAAGCTTTCGGCAGGACGAAGGAGCT
ACGCCCCCTCTCACGGCGTCGCCGCAGCAGTTACGCAGCCGCCCGCTACT
GCTGCTACTGTTGCGCCAGCAGTAACAATAATAATGTCGAATCCTGACGA
TGGGGAACGGAAGAGCCGACAGGCTATT
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