mRNA_L-elsbetiae_contig7531.16432.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7531.16432.1
Unique NamemRNA_L-elsbetiae_contig7531.16432.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7531.16432.1 vs. uniprot
Match: D7FUF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 7.950e-56
Identity = 94/132 (71.21%), Postives = 107/132 (81.06%), Query Frame = 1 
Query:    1 QADMKKAAKAXXXXXXXXXXXXXXXSAPGKMLYLEKGKDFLTEQMHIALGVIVLSALILGLVNGPGVWPRNLQQGAFPACFMVATGVMAYNSFLRQAREFDGGSLDDFFPAFAAAIAATLLANKGSAMQASA 396
            +A +KKAAK                +  GKMLYLEKGKD +TEQ+H+ALGV+V+  L+L LVNGPGVWPRNLQQGAFPACFM+A+GV+AYNSFLRQARE DGGSLDDFFPAFAAA+AATLLA KGSAMQASA
Sbjct:  138 KAQLKKAAK----DAAKKAAAGIGAAGGGKMLYLEKGKDVVTEQLHVALGVLVVVVLVLALVNGPGVWPRNLQQGAFPACFMIASGVLAYNSFLRQARESDGGSLDDFFPAFAAALAATLLARKGSAMQASA 265
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7531.16432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF4_ECTSI7.950e-5671.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7531contigL-elsbetiae_contig7531:8114..9510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_000410.1
Exons3
Model size399
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7531.16432.1prot_L-elsbetiae_contig7531.16432.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7531 8114..9501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.4527898-CDS-L-elsbetiae_contig7531:8113..82991622816837.4527898-CDS-L-elsbetiae_contig7531:8113..8299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7531 8114..8299 -
1691683851.274439-CDS-L-elsbetiae_contig7531:8113..82991691683851.274439-CDS-L-elsbetiae_contig7531:8113..8299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7531 8114..8299 -
1622816837.4656403-CDS-L-elsbetiae_contig7531:9022..91011622816837.4656403-CDS-L-elsbetiae_contig7531:9022..9101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7531 9023..9101 -
1691683851.2863605-CDS-L-elsbetiae_contig7531:9022..91011691683851.2863605-CDS-L-elsbetiae_contig7531:9022..9101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7531 9023..9101 -
1622816837.4781046-CDS-L-elsbetiae_contig7531:9376..95011622816837.4781046-CDS-L-elsbetiae_contig7531:9376..9501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7531 9377..9501 -
1691683851.2989702-CDS-L-elsbetiae_contig7531:9376..95011691683851.2989702-CDS-L-elsbetiae_contig7531:9376..9501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7531 9377..9501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.4886074-UTR-L-elsbetiae_contig7531:9501..95101622816837.4886074-UTR-L-elsbetiae_contig7531:9501..9510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7531 9502..9510 -
1691683851.311227-UTR-L-elsbetiae_contig7531:9501..95101691683851.311227-UTR-L-elsbetiae_contig7531:9501..9510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7531 9502..9510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7531.16432.1

>prot_L-elsbetiae_contig7531.16432.1 ID=prot_L-elsbetiae_contig7531.16432.1|Name=mRNA_L-elsbetiae_contig7531.16432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MKKAAKAAAKKAAKGVAAAAAASAPGKMLYLEKGKDFLTEQMHIALGVIV
LSALILGLVNGPGVWPRNLQQGAFPACFMVATGVMAYNSFLRQAREFDGG
SLDDFFPAFAAAIAATLLANKGSAMQASA*
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mRNA from alignment at L-elsbetiae_contig7531:8114..9510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7531.16432.1 ID=mRNA_L-elsbetiae_contig7531.16432.1|Name=mRNA_L-elsbetiae_contig7531.16432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1397bp|location=Sequence derived from alignment at L-elsbetiae_contig7531:8114..9510- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCAGACATGAAGAAGGCAGCGAAGGCGGCCGCTAAGAAGGCTGCCAA
GGGGGTCGCGGCTGCGGCTGCTGCTTCGGCCCCTGGCAAGATGCTGTATC
TTGAGAAGGGCAAGGACTTCCTCACCGAGCAGATGTGAGAGGGAGGCCGG
CACCACGTCTTGCATCATGCTTTCTTGTTCGGATTCCGCAAAGATTCCCC
CTTTTGAGACCTGTCGTTGTTTGTTTGATGCGCTCGGAATCAAGTTGTGG
ATGGTGCGCTGCTCACCTTTTTAAGAGACACTACACGTACTGTAGCACCC
GTAACACCAACAGCCGCACCAACGGCAACACAGCAGTATGGTGTCACACG
GCCTCATGGCGACTTATTTCCCGCTCTCTCTCCCGCTGCCGATTGATGTC
TCACCCCAGGCATATCGCTCTGGGTGTCATCGTGCTCTCGGCGTTGATTC
TCGGATTGGTCAACGGACCCGGCGTGTGGCCTCGAAATGTGAGTGTGGTG
TGAGAGAAGTCCCGTTTTCATGACCTAACCTCTCTAACGAAGTTTCAGTC
TCCGTCTTCTTCCCAACAAAGTGTGAGGGTCCGCCCGTCTTCATGAATTA
CCCCGTCTATTGGCGACGGCTCTTTGAGCGTCAAATGTTGTTTGGTTAGT
TTACTGCGCGCACCAGCCGATACTGCTGTTGTGGTGTATTTGCTGCATTC
CTCGTCTGGTAAAGGCACCTTGCGTGTATTGGCACCTCAACTGGTGTAGG
TATGAGTTTCTCGGCCCAGGGACTCAAGCTTGGCGTTTCTCTACACATGT
CGATATAGATCAATATTCTCGCACAGTGTGAATACCGATAATAACCACCC
AGCCCATTTGTTGGTGAGTTGCGGGGGCTGCCACCGTTGTCGCCATGCGC
GCGCGCTTGGACTTGGCGCTTCGTCTTTTGTGTTTATACGGCAGCAATGT
GGCGGTTTCCGGATCAACCATCGAAAGACCAACGTGCCCTCATGATTACC
GGGCATGCAATGCAACAGCAGGCGCTTGGTTCAGCCTCGACTTCAACCAC
TTGAATATGTATCACCGTTGCGTATCGCTATTTATCATCGTTTGGTATGT
CCTCGTTGTCTCCACCGTGGTGTCCTCCTCTCTTCTCATGCTTCCACTTT
TGTTTCCCCCCGCCTCTTTTTTCAAACGGACGGTACAACTGCGCCATGAT
TGGCGTGGCAGTTGCAGCAGGGGGCATTCCCGGCGTGCTTCATGGTCGCC
ACCGGAGTCATGGCCTACAACTCGTTCTTGCGCCAGGCCAGGGAGTTCGA
CGGCGGCAGCCTGGACGACTTCTTCCCGGCCTTCGCCGCCGCAATTGCGG
CCACCCTCCTGGCAAACAAGGGGTCGGCGATGCAAGCGTCGGCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7531:8114..9510-

>mRNA_L-elsbetiae_contig7531.16432.1 ID=mRNA_L-elsbetiae_contig7531.16432.1|Name=mRNA_L-elsbetiae_contig7531.16432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig7531:8114..9510- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAGGCAGCGAAGGCGGCCGCTAAGAAGGCTGCCAAGGGGGTCGC
GGCTGCGGCTGCTGCTTCGGCCCCTGGCAAGATGCTGTATCTTGAGAAGG
GCAAGGACTTCCTCACCGAGCAGATATGAAGAAGGCAGCGAAGGCGGCCG
CTAAGAAGGCTGCCAAGGGGGTCGCGGCTGCGGCTGCTGCTTCGGCCCCT
GGCAAGATGCTGTATCTTGAGAAGGGCAAGGACTTCCTCACCGAGCAGAT
GCATATCGCTCTGGGTGTCATCGTGCTCTCGGCGTTGATTCTCGGATTGG
TCAACGGACCCGGCGTGTGGCCTCGAAATGCATATCGCTCTGGGTGTCAT
CGTGCTCTCGGCGTTGATTCTCGGATTGGTCAACGGACCCGGCGTGTGGC
CTCGAAATTTGCAGCAGGGGGCATTCCCGGCGTGCTTCATGGTCGCCACC
GGAGTCATGGCCTACAACTCGTTCTTGCGCCAGGCCAGGGAGTTCGACGG
CGGCAGCCTGGACGACTTCTTCCCGGCCTTCGCCGCCGCAATTGCGGCCA
CCCTCCTGGCAAACAAGGGGTCGGCGATGCAAGCGTCGGCCTAATTGCAG
CAGGGGGCATTCCCGGCGTGCTTCATGGTCGCCACCGGAGTCATGGCCTA
CAACTCGTTCTTGCGCCAGGCCAGGGAGTTCGACGGCGGCAGCCTGGACG
ACTTCTTCCCGGCCTTCGCCGCCGCAATTGCGGCCACCCTCCTGGCAAAC
AAGGGGTCGGCGATGCAAGCGTCGGCCTAA
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