mRNA_L-elsbetiae_contig7531.16430.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7531.16430.1
Unique NamemRNA_L-elsbetiae_contig7531.16430.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7531.16430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7531contigL-elsbetiae_contig7531:1834..2696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_000430.1
Exons1
Model size864
Cds size861
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816837.3659418-CDS-L-elsbetiae_contig7531:1833..26941622816837.3659418-CDS-L-elsbetiae_contig7531:1833..2694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7531 1834..2694 +
1691683851.210599-CDS-L-elsbetiae_contig7531:1833..26941691683851.210599-CDS-L-elsbetiae_contig7531:1833..2694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7531 1834..2694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7531.16430.1prot_L-elsbetiae_contig7531.16430.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7531 1834..2694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7531.16430.1

>prot_L-elsbetiae_contig7531.16430.1 ID=prot_L-elsbetiae_contig7531.16430.1|Name=mRNA_L-elsbetiae_contig7531.16430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp
TPASAAGGSGLSWREGEYHEAANPTSGTATVLGSSQGSSTSTAATTARGR
AVRNSASSCGVYSPVDLRSAGRGEGLGALGLGSPPSGVVRAFDEDGEGES
PPRPRAFWREEWLGGSRRGAGGREGCSVLDCPRRGHPTPAVSGDFSDAAG
ERAPEHGVGRTRPGRCCRNGPPSRDECCCLGGSSCKSGGSGSSGEGSRSN
GKGSRPRRCCSNASPFRDARVKKSCCGGNSGDADARADSSSSATWFRGSS
GAEAQESRHEGQEGRKRRTGTFGSGNSSNNNVVSRSE
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mRNA from alignment at L-elsbetiae_contig7531:1834..2696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7531.16430.1 ID=mRNA_L-elsbetiae_contig7531.16430.1|Name=mRNA_L-elsbetiae_contig7531.16430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=863bp|location=Sequence derived from alignment at L-elsbetiae_contig7531:1834..2696+ (Laminarionema elsbetiae ELsaHSoW15)
ACACCAGCTTCGGCTGCCGGTGGTAGCGGTCTCTCCTGGCGCGAGGGTGA
ATACCACGAGGCTGCTAACCCAACCAGCGGAACGGCGACCGTGCTCGGCT
CGTCCCAGGGCAGCAGCACCAGCACGGCGGCAACAACCGCTCGCGGTCGG
GCGGTGCGGAACTCGGCTTCCTCGTGCGGCGTGTACAGTCCCGTCGACCT
CCGCAGTGCCGGGAGAGGGGAGGGGTTAGGGGCGTTAGGCCTCGGCAGCC
CCCCGTCCGGAGTCGTGCGAGCATTCGACGAGGACGGGGAGGGCGAATCT
CCGCCGCGCCCGCGGGCGTTCTGGCGAGAGGAGTGGCTCGGAGGAAGCAG
GCGCGGAGCAGGCGGTCGCGAGGGCTGCAGCGTCCTTGATTGCCCGAGGA
GAGGGCACCCTACGCCTGCTGTAAGCGGTGATTTTTCCGATGCAGCCGGC
GAACGAGCGCCTGAGCATGGAGTCGGAAGGACGCGCCCGGGCCGCTGCTG
CCGCAATGGTCCACCTTCTAGGGACGAGTGCTGCTGTCTGGGCGGCAGCA
GCTGCAAAAGCGGCGGCAGCGGCAGCAGCGGCGAAGGCAGCCGCAGCAAC
GGCAAAGGCTCGCGACCCCGCCGGTGCTGTAGCAACGCGTCTCCATTCCG
AGACGCACGCGTTAAAAAATCGTGTTGTGGTGGAAACAGTGGCGACGCCG
ACGCGCGAGCCGACTCGTCGTCGAGCGCCACCTGGTTCCGTGGTTCGAGC
GGGGCGGAGGCGCAGGAAAGTCGGCATGAGGGCCAAGAAGGTCGAAAACG
ACGGACCGGAACCTTCGGCAGCGGCAACAGCAGCAACAACAACGTCGTTA
GCAGAAGCGAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7531:1834..2696+

>mRNA_L-elsbetiae_contig7531.16430.1 ID=mRNA_L-elsbetiae_contig7531.16430.1|Name=mRNA_L-elsbetiae_contig7531.16430.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1722bp|location=Sequence derived from alignment at L-elsbetiae_contig7531:1834..2696+ (Laminarionema elsbetiae ELsaHSoW15)
ACACCAGCTTCGGCTGCCGGTGGTAGCGGTCTCTCCTGGCGCGAGGGTGA
ATACCACGAGGCTGCTAACCCAACCAGCGGAACGGCGACCGTGCTCGGCT
CGTCCCAGGGCAGCAGCACCAGCACGGCGGCAACAACCGCTCGCGGTCGG
GCGGTGCGGAACTCGGCTTCCTCGTGCGGCGTGTACAGTCCCGTCGACCT
CCGCAGTGCCGGGAGAGGGGAGGGGTTAGGGGCGTTAGGCCTCGGCAGCC
CCCCGTCCGGAGTCGTGCGAGCATTCGACGAGGACGGGGAGGGCGAATCT
CCGCCGCGCCCGCGGGCGTTCTGGCGAGAGGAGTGGCTCGGAGGAAGCAG
GCGCGGAGCAGGCGGTCGCGAGGGCTGCAGCGTCCTTGATTGCCCGAGGA
GAGGGCACCCTACGCCTGCTGTAAGCGGTGATTTTTCCGATGCAGCCGGC
GAACGAGCGCCTGAGCATGGAGTCGGAAGGACGCGCCCGGGCCGCTGCTG
CCGCAATGGTCCACCTTCTAGGGACGAGTGCTGCTGTCTGGGCGGCAGCA
GCTGCAAAAGCGGCGGCAGCGGCAGCAGCGGCGAAGGCAGCCGCAGCAAC
GGCAAAGGCTCGCGACCCCGCCGGTGCTGTAGCAACGCGTCTCCATTCCG
AGACGCACGCGTTAAAAAATCGTGTTGTGGTGGAAACAGTGGCGACGCCG
ACGCGCGAGCCGACTCGTCGTCGAGCGCCACCTGGTTCCGTGGTTCGAGC
GGGGCGGAGGCGCAGGAAAGTCGGCATGAGGGCCAAGAAGGTCGAAAACG
ACGGACCGGAACCTTCGGCAGCGGCAACAGCAGCAACAACAACGTCGTTA
GCAGAAGCGAGACACCAGCTTCGGCTGCCGGTGGTAGCGGTCTCTCCTGG
CGCGAGGGTGAATACCACGAGGCTGCTAACCCAACCAGCGGAACGGCGAC
CGTGCTCGGCTCGTCCCAGGGCAGCAGCACCAGCACGGCGGCAACAACCG
CTCGCGGTCGGGCGGTGCGGAACTCGGCTTCCTCGTGCGGCGTGTACAGT
CCCGTCGACCTCCGCAGTGCCGGGAGAGGGGAGGGGTTAGGGGCGTTAGG
CCTCGGCAGCCCCCCGTCCGGAGTCGTGCGAGCATTCGACGAGGACGGGG
AGGGCGAATCTCCGCCGCGCCCGCGGGCGTTCTGGCGAGAGGAGTGGCTC
GGAGGAAGCAGGCGCGGAGCAGGCGGTCGCGAGGGCTGCAGCGTCCTTGA
TTGCCCGAGGAGAGGGCACCCTACGCCTGCTGTAAGCGGTGATTTTTCCG
ATGCAGCCGGCGAACGAGCGCCTGAGCATGGAGTCGGAAGGACGCGCCCG
GGCCGCTGCTGCCGCAATGGTCCACCTTCTAGGGACGAGTGCTGCTGTCT
GGGCGGCAGCAGCTGCAAAAGCGGCGGCAGCGGCAGCAGCGGCGAAGGCA
GCCGCAGCAACGGCAAAGGCTCGCGACCCCGCCGGTGCTGTAGCAACGCG
TCTCCATTCCGAGACGCACGCGTTAAAAAATCGTGTTGTGGTGGAAACAG
TGGCGACGCCGACGCGCGAGCCGACTCGTCGTCGAGCGCCACCTGGTTCC
GTGGTTCGAGCGGGGCGGAGGCGCAGGAAAGTCGGCATGAGGGCCAAGAA
GGTCGAAAACGACGGACCGGAACCTTCGGCAGCGGCAACAGCAGCAACAA
CAACGTCGTTAGCAGAAGCGAG
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