mRNA_L-elsbetiae_contig753.16426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig753.16426.1
Unique NamemRNA_L-elsbetiae_contig753.16426.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig753.16426.1 vs. uniprot
Match: D7G869_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G869_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 5.220e-86
Identity = 166/219 (75.80%), Postives = 179/219 (81.74%), Query Frame = 1 
Query:    1 MAGKAFENEELRLFHKACMNGRALEIANAKSISPSLLNARSVVTGRTAVHEACANGHRDTLEQLLKRGADMQKTTFLGXXXXXXXXXXXXXXXXXXXXXXXXXXPNATNNYSATCFHYAGGKPAIAKLLLRYGGKVSVRDSSKKTPWDCVHEKCSGNRELNKMMKEAFDREEKERAQAELALVKEEEDHANAKRREANESRKRANIEKTASEYRKWRGG 657
            M GKAFE+EELR+FHKAC  G+ LEIANAK ISP LLN RSVVTGRTAVHEACANGHRD LEQLLKRGAD QKTTFLG  XXXXXXXXXXXXXXXXXXXXXXX PN  N YSAT FHYAG KP IAKLLLRYGGKVS+RD+S+KTPWD VHE+C  NRELNK+MKEAFDREE+ RA+AELA VK              E+R+R  IEKTAS YR+WRGG
Sbjct:    1 MTGKAFESEELRVFHKACREGKTLEIANAKFISPDLLNTRSVVTGRTAVHEACANGHRDALEQLLKRGADTQKTTFLGGDXXXXXXXXXXXXXXXXXXXXXXXDPNVPNKYSATSFHYAGSKPTIAKLLLRYGGKVSLRDNSRKTPWDRVHEECPDNRELNKLMKEAFDREEEARARAELARVKXXXXXXXXXXXXXXEARERGKIEKTASAYRQWRGG 219
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig753.16426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G869_ECTSI5.220e-8675.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig753contigL-elsbetiae_contig753:1795..4418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue3.7e-69
Seed eggNOG ortholog2880.D7G869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_001280.1
Exons4
Model size1117
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig753.16426.1prot_L-elsbetiae_contig753.16426.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig753 1795..3961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.8257835-CDS-L-elsbetiae_contig753:1794..19351622816836.8257835-CDS-L-elsbetiae_contig753:1794..1935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 1795..1935 +
1691683850.6626952-CDS-L-elsbetiae_contig753:1794..19351691683850.6626952-CDS-L-elsbetiae_contig753:1794..1935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 1795..1935 +
1622816836.838994-CDS-L-elsbetiae_contig753:2428..26791622816836.838994-CDS-L-elsbetiae_contig753:2428..2679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 2429..2679 +
1691683850.6772919-CDS-L-elsbetiae_contig753:2428..26791691683850.6772919-CDS-L-elsbetiae_contig753:2428..2679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 2429..2679 +
1622816836.8495257-CDS-L-elsbetiae_contig753:3216..33551622816836.8495257-CDS-L-elsbetiae_contig753:3216..3355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 3217..3355 +
1691683850.6905973-CDS-L-elsbetiae_contig753:3216..33551691683850.6905973-CDS-L-elsbetiae_contig753:3216..3355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 3217..3355 +
1622816836.8595831-CDS-L-elsbetiae_contig753:3832..39611622816836.8595831-CDS-L-elsbetiae_contig753:3832..3961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 3833..3961 +
1691683850.7026107-CDS-L-elsbetiae_contig753:3832..39611691683850.7026107-CDS-L-elsbetiae_contig753:3832..3961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig753 3833..3961 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.8698416-UTR-L-elsbetiae_contig753:3961..44181622816836.8698416-UTR-L-elsbetiae_contig753:3961..4418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig753 3962..4418 +
1691683850.7165518-UTR-L-elsbetiae_contig753:3961..44181691683850.7165518-UTR-L-elsbetiae_contig753:3961..4418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig753 3962..4418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig753.16426.1

>prot_L-elsbetiae_contig753.16426.1 ID=prot_L-elsbetiae_contig753.16426.1|Name=mRNA_L-elsbetiae_contig753.16426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MAGKAFENEELRLFHKACMNGRALEIANAKSISPSLLNARSVVTGRTAVH
EACANGHRDTLEQLLKRGADMQKTTFLGGDTALHLAVNSGERSLVFSLLR
AGADPNATNNYSATCFHYAGGKPAIAKLLLRYGGKVSVRDSSKKTPWDCV
HEKCSGNRELNKMMKEAFDREEKERAQAELALVKEEEDHANAKRREANES
RKRANIEKTASEYRKWRGG*
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mRNA from alignment at L-elsbetiae_contig753:1795..4418+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig753.16426.1 ID=mRNA_L-elsbetiae_contig753.16426.1|Name=mRNA_L-elsbetiae_contig753.16426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2624bp|location=Sequence derived from alignment at L-elsbetiae_contig753:1795..4418+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGAAAAGCATTCGAAAACGAGGAGCTTCGCCTTTTCCACAAAGC
ATGCATGAACGGGAGGGCGCTCGAAATCGCGAACGCTAAATCCATCTCGC
CCAGCTTGCTTAACGCTCGGAGCGTTGTTACAGGACGAACGGTAAGGTAT
CGTCTAGTGAGTGCTGCCGGCATAGATACAGCATACACAGCAAAGTAACG
TGCGTCCAACATAATTAGGAGCGAAAGTACAGCAGTACCTGTGTACACCC
CGCTGGCGCTCGAGCCCAGGGCAGCAGATCGCACAGCTAAGTACGATTAC
GTTTCATCCTGTACAAACATAAAAGCAAAAGACCCGTACATTCCGAGGCC
ACATCGAACAGTCCCTGGCCATCCTTACATTAATAACACACGTTTTTTGT
GCACGCGGCAACAGAAGCTTGTGTGAGGATGCACCATGCACAGCAGCGAT
CCCGATAGACAATTGCCCGCCCGTTGTTCGATAAATAGACGCAACACGAG
CTTGAGATATAGATATCTAGGTTACATATACTTCGTTTGCGGCGAGCTGT
AACCAAACCAAGAATAGGCTATGACGCCCCTTGCCCCTTGCTCCCGTGCG
GTTTCCACATTTTTGGGTATCATTGGCACGACAGGCGGTGCACGAAGCTT
GCGCTAACGGGCACCGAGATACCCTTGAACAACTCCTGAAGCGAGGGGCG
GACATGCAAAAGACAACTTTTCTTGGCGGGGACACCGCCTTGCATCTAGC
TGTGAACTCAGGAGAACGATCTTTGGTATTTTCGCTCCTTCGTGCCGGCG
CTGATCCGAACGCGACCAACAACTACTCTGCAACCTGTTTCCACTACGCC
GGCGGCAAGCCGGCCATTGCCAAGCTGCTATTACGGTAAAAAACTGCAAC
ATGAAGTGAAACGTTCGCAACACTCAAACACAGGTTTGCGCGACTCGCAC
GCTTGGGCTTTGATAGCTGATGCGACACGCGCTGCCATCTTCTCAGCGCG
GCACCCGCAAAAATCGCTCCTCTTGCCTGTCCCGAGTTTTCACATTATGA
AAACCGTACTCCTCACGCCCACTAAGTAAAATCTTGAACCAAGTATCGGC
GGCGTTTCTCACTAAATACGTTCGTGAAAGCAGCCTGGCTGTAACGTGAT
AAAATTTCCTACGTTTATCTAGGTTCTTGCACTGCACATCATCCCAACCT
CCAAGAACTTGGTTTATTGGCTTGACATAGATGTAAAATACCACGTGGCC
AATAATAACCACATTCGCGACCTGCCGGTGGCGGGGCTGGTGATGCTGTA
GCCGACCGGGGGGCGAAAGAGGCACATCGCTTCGAACACAGCTCGCGAAG
TTGCCTCGACCCGGCTGTAGGCAACTGTCGACGTCCATTAGCGCCACCGT
TCCCTCCTTTCTGCTCCCAAAGGTACGGAGGCAAAGTCTCTGTGCGGGAC
AGCTCCAAGAAAACCCCTTGGGATTGTGTTCACGAGAAATGCTCTGGAAA
CCGGGAGCTGAACAAGATGATGAAGGAGGCCTTTGATCGCGAAGAAAAAG
AACGAGCCCAGGTGGGCGTGCAACTACTGTATACTAAATCACAACTGAAC
TCTTCGACAGAGTTGCCACGACACTGACAATTGGTGGTGCGCGACGTCCC
CTAGTAAGGGTACGGTTTTCAAGGAATTTCCCACCGCGTTCCCACCCGCT
CGGCCCGATCATAACATCAAAATCCACCCCAGTAGAAAACGCTAGCGTTA
GCTTGTGTGTAGACATCGAGGGAGAGACGGCCGAACTCTTCTGGTGTTAA
AATTTGGAAGACAGAGCACCGCAGAAGGGTGGATGCGGGAGTCTCTGGGG
GGGAATACTTCGGTGTGACCATGGATCAGAGCCCTGGCAAGGTGCTCCTC
GAGCGCTGGTTTAATGCGTAGGTAAGAAAAAAAAATGCCCCACGGCTGTT
TGTGAGGTTCGGGATAGGTGTGTGGGTCAACAAAATATCCGTACGCGCCC
TTGTGGTTTTTTTTTACGCCTCTTGTGTTCGCGAACAGGCGGAGTTGGCG
CTGGTAAAGGAAGAAGAGGACCACGCGAATGCCAAAAGACGGGAAGCCAA
CGAGTCCCGGAAGCGGGCAAATATCGAAAAGACTGCATCAGAATACAGAA
AGTGGCGCGGGGGATAATGAATTCATGCCATCACGTGCGGACTGTTTGTG
AGCATCTTCCCTTTAACACACAAGACACAAAATAGTGTTACCCGTCTCTT
TGGAGCTTTTAGTTGTTTGGACGCTTTCGAAGAGCTTCTATGATTAATAC
GAGATGCGTAGCCTTACAAAAGAGGAAGCTTTCCACCCTAAGGGAGCTTT
CCACCCCGTGACACGTTGATAACGAAGGGAGAATGTTGAATGTAAACGCA
CTTTGTAGTTTACGCCGGCAACAGGTCTGCATGTAAGCCTCCGTTTTTAG
CGCGGTGCTTTGCGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTAGC
GACAGTCCCCCCACGTGGAGGCATGTACTACACCTTGCGATGTACTTAGA
GGTACTAAACTTTGCAGTGCATTTGTATGTACAACTAGAACCAACCGGGG
TCACACAGGAGGAGGTGAACACTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig753:1795..4418+

>mRNA_L-elsbetiae_contig753.16426.1 ID=mRNA_L-elsbetiae_contig753.16426.1|Name=mRNA_L-elsbetiae_contig753.16426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig753:1795..4418+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGAAAAGCATTCGAAAACGAGGAGCTTCGCCTTTTCCACAAAGC
ATGCATGAACGGGAGGGCGCTCGAAATCGCGAACGCTAAATCCATCTCGC
CCAGCTTGCTTAACGCTCGGAGCGTTGTTACAGGACGAACGATGGCGGGA
AAAGCATTCGAAAACGAGGAGCTTCGCCTTTTCCACAAAGCATGCATGAA
CGGGAGGGCGCTCGAAATCGCGAACGCTAAATCCATCTCGCCCAGCTTGC
TTAACGCTCGGAGCGTTGTTACAGGACGAACGGCGGTGCACGAAGCTTGC
GCTAACGGGCACCGAGATACCCTTGAACAACTCCTGAAGCGAGGGGCGGA
CATGCAAAAGACAACTTTTCTTGGCGGGGACACCGCCTTGCATCTAGCTG
TGAACTCAGGAGAACGATCTTTGGTATTTTCGCTCCTTCGTGCCGGCGCT
GATCCGAACGCGACCAACAACTACTCTGCAACCTGTTTCCACTACGCCGG
CGGCAAGCCGGCCATTGCCAAGCTGCTATTACGGCGGTGCACGAAGCTTG
CGCTAACGGGCACCGAGATACCCTTGAACAACTCCTGAAGCGAGGGGCGG
ACATGCAAAAGACAACTTTTCTTGGCGGGGACACCGCCTTGCATCTAGCT
GTGAACTCAGGAGAACGATCTTTGGTATTTTCGCTCCTTCGTGCCGGCGC
TGATCCGAACGCGACCAACAACTACTCTGCAACCTGTTTCCACTACGCCG
GCGGCAAGCCGGCCATTGCCAAGCTGCTATTACGGTACGGAGGCAAAGTC
TCTGTGCGGGACAGCTCCAAGAAAACCCCTTGGGATTGTGTTCACGAGAA
ATGCTCTGGAAACCGGGAGCTGAACAAGATGATGAAGGAGGCCTTTGATC
GCGAAGAAAAAGAACGAGCCCAGGTACGGAGGCAAAGTCTCTGTGCGGGA
CAGCTCCAAGAAAACCCCTTGGGATTGTGTTCACGAGAAATGCTCTGGAA
ACCGGGAGCTGAACAAGATGATGAAGGAGGCCTTTGATCGCGAAGAAAAA
GAACGAGCCCAGGCGGAGTTGGCGCTGGTAAAGGAAGAAGAGGACCACGC
GAATGCCAAAAGACGGGAAGCCAACGAGTCCCGGAAGCGGGCAAATATCG
AAAAGACTGCATCAGAATACAGAAAGTGGCGCGGGGGATAAGCGGAGTTG
GCGCTGGTAAAGGAAGAAGAGGACCACGCGAATGCCAAAAGACGGGAAGC
CAACGAGTCCCGGAAGCGGGCAAATATCGAAAAGACTGCATCAGAATACA
GAAAGTGGCGCGGGGGATAA
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