mRNA_L-elsbetiae_contig7528.16424.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7528.16424.1
Unique NamemRNA_L-elsbetiae_contig7528.16424.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7528.16424.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.360e-39
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 RYWRQARSPGEIQRDLRRDVTGMDGLVGLWGCDEGQGSSLTDWTDNHACCLGRGGTEWVDVPHGAPV 201
            RYWRQAR+PGEI RDLRRDV+GMDGLVGLWGCDEGQGSSLTDWTDNHACCLGRGGTEWVDVP GAPV
Sbjct: 5586 RYWRQARTPGEILRDLRRDVSGMDGLVGLWGCDEGQGSSLTDWTDNHACCLGRGGTEWVDVPRGAPV 5652
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BLAST of mRNA_L-elsbetiae_contig7528.16424.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.360e-39
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 RYWRQARSPGEIQRDLRRDVTGMDGLVGLWGCDEGQGSSLTDWTDNHACCLGRGGTEWVDVPHGAPV 201
            RYWRQAR+PGEI RDLRRDV+GMDGLVGLWGCDEGQGSSLTDWTDNHACCLGRGGTEWVDVP GAPV
Sbjct: 6130 RYWRQARTPGEILRDLRRDVSGMDGLVGLWGCDEGQGSSLTDWTDNHACCLGRGGTEWVDVPRGAPV 6196
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BLAST of mRNA_L-elsbetiae_contig7528.16424.1 vs. uniprot
Match: A0A562IJS8_MICOL (Concanavalin A-like lectin/glucanase superfamily protein n=1 Tax=Micromonospora olivasterospora TaxID=1880 RepID=A0A562IJS8_MICOL)

HSP 1 Score: 57.4 bits (137), Expect = 5.580e-8
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:    1 RYWRQARSPGEIQRDLRRDVTGMD-GLVGLWGCDEGQGSSLTDWTDNHACCLGRGGTEWVDVPHGAPV 201
            R W QAR  G++ RD RR + G++ GLV  +  DEG GSS+ D TDN      RGG  WV    GAPV
Sbjct:  478 RIWSQARPVGDLARDFRRRLAGVEPGLVAYYRFDEGAGSSVADHTDNGFDGTVRGGAVWVTS--GAPV 543
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BLAST of mRNA_L-elsbetiae_contig7528.16424.1 vs. uniprot
Match: A0A7X8QSK0_9BACT (LamG domain-containing protein (Fragment) n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X8QSK0_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 2.110e-5
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 RYWRQARSPGEIQRDLRRDVTGMD-GLVGLWGCDEGQGSSLTDWT 132
            R W  ARS GEI  D+   +TG + GL+G W  DEG+G+++ DWT
Sbjct:  163 RVWNYARSGGEILMDMETRLTGAEAGLIGYWPLDEGEGTTVYDWT 207
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BLAST of mRNA_L-elsbetiae_contig7528.16424.1 vs. uniprot
Match: A0A7Y3I243_9BACT (EF-hand domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y3I243_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 2.890e-5
Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:    1 RYWRQARSPGEIQRDLRRDVTGMDGLVGLWGCDEGQGSSLTDWTDNHACCLGRGGTEWVDVPHGAP 198
            R W  AR+  +I+  +   VT   GLVG WG +EG G+S+ D + N    +  G   W+D   GAP
Sbjct:  212 RVWSIARTAADIRATMNESVTSAPGLVGRWGLNEGDGTSVADSSGNDVNGIIVGNAAWID---GAP 274
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7528.16424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI4.360e-3994.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE4.360e-3994.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A562IJS8_MICOL5.580e-848.53Concanavalin A-like lectin/glucanase superfamily p... [more]
A0A7X8QSK0_9BACT2.110e-548.89LamG domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7Y3I243_9BACT2.890e-537.88EF-hand domain-containing protein n=1 Tax=Phycisph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7528contigL-elsbetiae_contig7528:8932..9132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue3.8e-33
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.680871-CDS-L-elsbetiae_contig7528:8931..91321622816836.680871-CDS-L-elsbetiae_contig7528:8931..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 8932..9132 +
1691683850.5576084-CDS-L-elsbetiae_contig7528:8931..91321691683850.5576084-CDS-L-elsbetiae_contig7528:8931..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 8932..9132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7528.16424.1prot_L-elsbetiae_contig7528.16424.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7528 8932..9132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7528.16424.1

>prot_L-elsbetiae_contig7528.16424.1 ID=prot_L-elsbetiae_contig7528.16424.1|Name=mRNA_L-elsbetiae_contig7528.16424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
RYWRQARSPGEIQRDLRRDVTGMDGLVGLWGCDEGQGSSLTDWTDNHACC
LGRGGTEWVDVPHGAPV
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mRNA from alignment at L-elsbetiae_contig7528:8932..9132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7528.16424.1 ID=mRNA_L-elsbetiae_contig7528.16424.1|Name=mRNA_L-elsbetiae_contig7528.16424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=201bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:8932..9132+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTACTGGCGGCAGGCGCGGTCCCCGGGAGAGATCCAGCGGGACCTGCG
GAGGGACGTGACGGGCATGGACGGGCTTGTCGGCCTCTGGGGCTGCGATG
AGGGGCAAGGGTCCTCTCTCACCGACTGGACGGATAACCACGCCTGCTGC
CTCGGCCGGGGCGGCACCGAGTGGGTCGACGTGCCTCACGGGGCCCCCGT
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7528:8932..9132+

>mRNA_L-elsbetiae_contig7528.16424.1 ID=mRNA_L-elsbetiae_contig7528.16424.1|Name=mRNA_L-elsbetiae_contig7528.16424.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:8932..9132+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTACTGGCGGCAGGCGCGGTCCCCGGGAGAGATCCAGCGGGACCTGCG
GAGGGACGTGACGGGCATGGACGGGCTTGTCGGCCTCTGGGGCTGCGATG
AGGGGCAAGGGTCCTCTCTCACCGACTGGACGGATAACCACGCCTGCTGC
CTCGGCCGGGGCGGCACCGAGTGGGTCGACGTGCCTCACGGGGCCCCCGT
CAGGTACTGGCGGCAGGCGCGGTCCCCGGGAGAGATCCAGCGGGACCTGC
GGAGGGACGTGACGGGCATGGACGGGCTTGTCGGCCTCTGGGGCTGCGAT
GAGGGGCAAGGGTCCTCTCTCACCGACTGGACGGATAACCACGCCTGCTG
CCTCGGCCGGGGCGGCACCGAGTGGGTCGACGTGCCTCACGGGGCCCCCG
TC
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