mRNA_L-elsbetiae_contig7528.16423.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7528.16423.1
Unique NamemRNA_L-elsbetiae_contig7528.16423.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7528.16423.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.770e-10
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  217 EDEPMRKGEVGTEPAEYLASSQTGHIKLQAGGTVFADSVGQTAGEDGP 360
            E    RKGE+GTEPAEYLASSQ GHI+LQAGGTV++DSV      DGP
Sbjct: 5957 ESSAARKGEIGTEPAEYLASSQAGHIRLQAGGTVYSDSVVAEIEVDGP 6004
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BLAST of mRNA_L-elsbetiae_contig7528.16423.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.440e-9
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  217 EDEPMRKGEVGTEPAEYLASSQTGHIKLQAGGTVFADSVGQTAGEDGP 360
            E    RKGE+GTEPAEYLASSQ GHI+LQAGGTV++DSV      DGP
Sbjct: 5421 ESAAARKGEIGTEPAEYLASSQAGHIRLQAGGTVYSDSVVGEIKMDGP 5468
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7528.16423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE7.770e-1068.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCZ5_ECTSI1.440e-968.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7528contigL-elsbetiae_contig7528:7616..8050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue6.3e-09
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size436
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.511015-CDS-L-elsbetiae_contig7528:7615..80501622816836.511015-CDS-L-elsbetiae_contig7528:7615..8050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 7616..8050 +
1691683850.488217-CDS-L-elsbetiae_contig7528:7615..80501691683850.488217-CDS-L-elsbetiae_contig7528:7615..8050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 7616..8050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7528.16423.1prot_L-elsbetiae_contig7528.16423.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7528 7616..8050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7528.16423.1

>prot_L-elsbetiae_contig7528.16423.1 ID=prot_L-elsbetiae_contig7528.16423.1|Name=mRNA_L-elsbetiae_contig7528.16423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
GFRAFSAAYASPPSAPAAGQQSSPSPWGLPSTLSTGGGGGGGGDAPSSAK
EKRELANAKRVAEAAAAAGGGAEDEPMRKGEVGTEPAEYLASSQTGHIKL
QAGGTVFADSVGQTAGEDGPAVEEGDDGLAAERKEGEADGGDRDR
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mRNA from alignment at L-elsbetiae_contig7528:7616..8050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7528.16423.1 ID=mRNA_L-elsbetiae_contig7528.16423.1|Name=mRNA_L-elsbetiae_contig7528.16423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=435bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:7616..8050+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTTCCGGGCGTTCAGTGCGGCGTACGCCTCGCCCCCTTCCGCGCCGGC
GGCCGGGCAGCAGAGCAGCCCGTCGCCCTGGGGCTTGCCGTCGACGCTGA
GCACCGGCGGTGGCGGCGGAGGCGGAGGCGATGCGCCTTCTTCCGCCAAG
GAGAAGCGAGAGCTGGCGAACGCCAAGCGGGTTGCCGAGGCAGCGGCGGC
GGCGGGCGGCGGCGCCGAGGACGAGCCGATGCGCAAGGGCGAGGTGGGAA
CGGAGCCGGCCGAGTACCTTGCGTCGTCGCAGACGGGGCACATCAAGCTC
CAAGCCGGAGGCACGGTGTTTGCCGATTCGGTGGGCCAGACAGCGGGGGA
GGACGGGCCCGCCGTGGAGGAGGGCGACGACGGGCTTGCGGCGGAGCGGA
AGGAAGGAGAGGCCGACGGGGGCGACCGTGACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7528:7616..8050+

>mRNA_L-elsbetiae_contig7528.16423.1 ID=mRNA_L-elsbetiae_contig7528.16423.1|Name=mRNA_L-elsbetiae_contig7528.16423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:7616..8050+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTTCCGGGCGTTCAGTGCGGCGTACGCCTCGCCCCCTTCCGCGCCGGC
GGCCGGGCAGCAGAGCAGCCCGTCGCCCTGGGGCTTGCCGTCGACGCTGA
GCACCGGCGGTGGCGGCGGAGGCGGAGGCGATGCGCCTTCTTCCGCCAAG
GAGAAGCGAGAGCTGGCGAACGCCAAGCGGGTTGCCGAGGCAGCGGCGGC
GGCGGGCGGCGGCGCCGAGGACGAGCCGATGCGCAAGGGCGAGGTGGGAA
CGGAGCCGGCCGAGTACCTTGCGTCGTCGCAGACGGGGCACATCAAGCTC
CAAGCCGGAGGCACGGTGTTTGCCGATTCGGTGGGCCAGACAGCGGGGGA
GGACGGGCCCGCCGTGGAGGAGGGCGACGACGGGCTTGCGGCGGAGCGGA
AGGAAGGAGAGGCCGACGGGGGCGACCGTGACCGCGGCTTCCGGGCGTTC
AGTGCGGCGTACGCCTCGCCCCCTTCCGCGCCGGCGGCCGGGCAGCAGAG
CAGCCCGTCGCCCTGGGGCTTGCCGTCGACGCTGAGCACCGGCGGTGGCG
GCGGAGGCGGAGGCGATGCGCCTTCTTCCGCCAAGGAGAAGCGAGAGCTG
GCGAACGCCAAGCGGGTTGCCGAGGCAGCGGCGGCGGCGGGCGGCGGCGC
CGAGGACGAGCCGATGCGCAAGGGCGAGGTGGGAACGGAGCCGGCCGAGT
ACCTTGCGTCGTCGCAGACGGGGCACATCAAGCTCCAAGCCGGAGGCACG
GTGTTTGCCGATTCGGTGGGCCAGACAGCGGGGGAGGACGGGCCCGCCGT
GGAGGAGGGCGACGACGGGCTTGCGGCGGAGCGGAAGGAAGGAGAGGCCG
ACGGGGGCGACCGTGACCGC
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