mRNA_L-elsbetiae_contig7528.16422.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7528.16422.1
Unique NamemRNA_L-elsbetiae_contig7528.16422.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7528.16422.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 5.100e-56
Identity = 121/179 (67.60%), Postives = 127/179 (70.95%), Query Frame = 1 
Query:  112 AGRSVLCFPSPTAYVSLQGRDLEPPWTAEFWLLRPNPDGTWEDG-ETSRTPGG------ESDGDGDDAD----ENMEESCAVGPLESGSPAAPAV--PRRGIRKAFSERLPPPPAAAVSMARAVSTPSSSVDLTHLPPMDSDNGAPALTRMRSADAVGQD-----GLLVVNADEFPPLP 594
            AGRSVLCFPSP AYVSLQGRDLEPPWTAEFWLLRPNPDGTWEDG E +  P        ES+G          E  E SC++ PLE G   A AV  P RGIRKAFSERLP PP A VSMARA STPSSSVDLTHLPPMDS NGAP+L R RSADAVGQD         +N DEFPPLP
Sbjct: 5105 AGRSVLCFPSPAAYVSLQGRDLEPPWTAEFWLLRPNPDGTWEDGDEATGEPAADAACKKESEGXXXXXXXXXXEKGERSCSIRPLELGPSVALAVAAPPRGIRKAFSERLPQPPPATVSMARASSTPSSSVDLTHLPPMDSANGAPSLARTRSADAVGQDEEDGRAAGALNTDEFPPLP 5283
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BLAST of mRNA_L-elsbetiae_contig7528.16422.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 4.460e-55
Identity = 121/193 (62.69%), Postives = 131/193 (67.88%), Query Frame = 1 
Query:   88 TEGGPPL-PA----GRSVLCFPSPTAYVSLQGRDLEPPWTAEFWLLRPNPDGTWEDG-ETSRTPGGESDGDGDDADENM-----------EESCAVGPLESGSPA--APAVPRRGIRKAFSERLPPPPAAAVSMARAVSTPSSSVDLTHLPPMDSDNGAPALTRMRSADAVGQD-----GLLVVNADEFPPLP 594
            TEG PP  PA    GRSVLCFPSP AYVSLQGRDLEPPWTAEFWLLRPNPDGTW+DG E +  P  ++ G+ +                 E SC++ PLE G     A A P RGIRKAFSERLP PP A  SMARA STPSSSVDLTHLPPMDS NGAP+L R RSADAVGQD         +N DEFPPLP
Sbjct: 5654 TEGVPPQQPAAAAVGRSVLCFPSPAAYVSLQGRDLEPPWTAEFWLLRPNPDGTWQDGDEATGEPAADAAGNKERGXXXXXXXXXXXXXKGERSCSIQPLELGPSVGLAVAAPPRGIRKAFSERLPQPPPATASMARASSTPSSSVDLTHLPPMDSANGAPSLARTRSADAVGQDEEDGRAAKALNTDEFPPLP 5846
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7528.16422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI5.100e-5667.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE4.460e-5562.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7528contigL-elsbetiae_contig7528:6911..7509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.9
Seed ortholog evalue1.1e-51
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size601
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.6453047-CDS-L-elsbetiae_contig7528:6910..75071622816836.6453047-CDS-L-elsbetiae_contig7528:6910..7507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 6911..7507 +
1691683850.5448425-CDS-L-elsbetiae_contig7528:6910..75071691683850.5448425-CDS-L-elsbetiae_contig7528:6910..7507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 6911..7507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7528.16422.1prot_L-elsbetiae_contig7528.16422.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7528 6911..7507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7528.16422.1

>prot_L-elsbetiae_contig7528.16422.1 ID=prot_L-elsbetiae_contig7528.16422.1|Name=mRNA_L-elsbetiae_contig7528.16422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
EKKQQGKERESDAITAAGAAPAAAAAAAVTEGGPPLPAGRSVLCFPSPTA
YVSLQGRDLEPPWTAEFWLLRPNPDGTWEDGETSRTPGGESDGDGDDADE
NMEESCAVGPLESGSPAAPAVPRRGIRKAFSERLPPPPAAAVSMARAVST
PSSSVDLTHLPPMDSDNGAPALTRMRSADAVGQDGLLVVNADEFPPLPL
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mRNA from alignment at L-elsbetiae_contig7528:6911..7509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7528.16422.1 ID=mRNA_L-elsbetiae_contig7528.16422.1|Name=mRNA_L-elsbetiae_contig7528.16422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=599bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:6911..7509+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGAAGCAGCAAGGCAAGGAGAGGGAGAGCGACGCCATCACTGCGGC
CGGCGCTGCTCCAGCTGCTGCTGCTGCTGCTGCTGTTACGGAGGGCGGTC
CTCCGCTACCGGCAGGCCGCTCGGTGCTGTGCTTCCCTTCGCCCACCGCC
TACGTGTCGCTTCAAGGCCGGGACTTGGAGCCGCCATGGACGGCGGAGTT
CTGGCTCCTCCGGCCCAACCCTGACGGGACGTGGGAAGATGGCGAGACGT
CGAGGACTCCCGGCGGCGAGTCGGACGGTGACGGCGACGATGCAGACGAA
AATATGGAAGAGTCTTGCGCGGTCGGACCTTTGGAGTCGGGGTCCCCCGC
CGCGCCCGCCGTTCCTAGGCGCGGCATTCGAAAGGCGTTCAGCGAGCGGC
TTCCTCCCCCGCCCGCGGCCGCCGTGTCCATGGCCCGCGCGGTCAGCACG
CCGTCGTCGTCGGTCGACCTCACCCACCTTCCCCCGATGGACTCGGACAA
CGGGGCCCCCGCGCTCACCCGCATGCGGTCCGCGGACGCCGTCGGGCAGG
ACGGGCTGTTGGTGGTGAACGCCGACGAGTTCCCCCCGCTACCGCTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7528:6911..7509+

>mRNA_L-elsbetiae_contig7528.16422.1 ID=mRNA_L-elsbetiae_contig7528.16422.1|Name=mRNA_L-elsbetiae_contig7528.16422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:6911..7509+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGAAGCAGCAAGGCAAGGAGAGGGAGAGCGACGCCATCACTGCGGC
CGGCGCTGCTCCAGCTGCTGCTGCTGCTGCTGCTGTTACGGAGGGCGGTC
CTCCGCTACCGGCAGGCCGCTCGGTGCTGTGCTTCCCTTCGCCCACCGCC
TACGTGTCGCTTCAAGGCCGGGACTTGGAGCCGCCATGGACGGCGGAGTT
CTGGCTCCTCCGGCCCAACCCTGACGGGACGTGGGAAGATGGCGAGACGT
CGAGGACTCCCGGCGGCGAGTCGGACGGTGACGGCGACGATGCAGACGAA
AATATGGAAGAGTCTTGCGCGGTCGGACCTTTGGAGTCGGGGTCCCCCGC
CGCGCCCGCCGTTCCTAGGCGCGGCATTCGAAAGGCGTTCAGCGAGCGGC
TTCCTCCCCCGCCCGCGGCCGCCGTGTCCATGGCCCGCGCGGTCAGCACG
CCGTCGTCGTCGGTCGACCTCACCCACCTTCCCCCGATGGACTCGGACAA
CGGGGCCCCCGCGCTCACCCGCATGCGGTCCGCGGACGCCGTCGGGCAGG
ACGGGCTGTTGGTGGTGAACGCCGACGAGTTCCCCCCGCTACCGCTCGAG
AAGAAGCAGCAAGGCAAGGAGAGGGAGAGCGACGCCATCACTGCGGCCGG
CGCTGCTCCAGCTGCTGCTGCTGCTGCTGCTGTTACGGAGGGCGGTCCTC
CGCTACCGGCAGGCCGCTCGGTGCTGTGCTTCCCTTCGCCCACCGCCTAC
GTGTCGCTTCAAGGCCGGGACTTGGAGCCGCCATGGACGGCGGAGTTCTG
GCTCCTCCGGCCCAACCCTGACGGGACGTGGGAAGATGGCGAGACGTCGA
GGACTCCCGGCGGCGAGTCGGACGGTGACGGCGACGATGCAGACGAAAAT
ATGGAAGAGTCTTGCGCGGTCGGACCTTTGGAGTCGGGGTCCCCCGCCGC
GCCCGCCGTTCCTAGGCGCGGCATTCGAAAGGCGTTCAGCGAGCGGCTTC
CTCCCCCGCCCGCGGCCGCCGTGTCCATGGCCCGCGCGGTCAGCACGCCG
TCGTCGTCGGTCGACCTCACCCACCTTCCCCCGATGGACTCGGACAACGG
GGCCCCCGCGCTCACCCGCATGCGGTCCGCGGACGCCGTCGGGCAGGACG
GGCTGTTGGTGGTGAACGCCGACGAGTTCCCCCCGCTACCGCTC
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