mRNA_L-elsbetiae_contig7528.16421.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7528.16421.1
Unique NamemRNA_L-elsbetiae_contig7528.16421.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7528.16421.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.410e-56
Identity = 125/166 (75.30%), Postives = 131/166 (78.92%), Query Frame = 1 
Query:    1 AARVVQAGSGAPAAPRRIFHAWTTGLRSPSLPVKQQVCAELSRLLDEAVQDVDRAQR-----ESAPAQVAAVGADGAGDEKGAEP---AAVLRRAAAVRRLRQCVELLPLERLRSVAERRMLKEGEDEPMLSRALQSIVDLVASAELASRVLREHQAAAAVAAAVD 474
            AARVVQAGSGAP  PRRIF AW T LRSPSLPVKQQVCAELSRLLDEAVQ VDRA R      SAPA V AV A G G E  A     A  L+RAA ++RLRQCVE+LPLERLRS+AERRMLKEGEDEPMLSRALQSIVDLV+SAELA RVLREH   AA AAA D
Sbjct: 4898 AARVVQAGSGAPTVPRRIFRAWATALRSPSLPVKQQVCAELSRLLDEAVQAVDRAHRAEAGPSSAPAAVRAVTAAGGGGESSAVSSGEAVRLQRAAVLKRLRQCVEILPLERLRSLAERRMLKEGEDEPMLSRALQSIVDLVSSAELALRVLREHDQVAAAAAATD 5063
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BLAST of mRNA_L-elsbetiae_contig7528.16421.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 5.310e-52
Identity = 118/160 (73.75%), Postives = 123/160 (76.88%), Query Frame = 1 
Query:    1 AARVVQAGSGAPAAPRRIFHAWTTGLRSPSLPVKQQVCAELSRLLDEAVQDVDRAQR-----ESAPAQVAAVGADGAGDEKGA---EPAAVLRRAAAVRRLRQCVELLPLERLRSVAERRMLKEGEDEPMLSRALQSIVDLVASAELASRVLREHQAAAA 456
            AARVVQAGSG P   RRIF AW T LRSPSLPVKQQVCAELSRLLDEAVQ VDRA R      SAPA V AV A G   E  A     A  L+RAA + RLRQCVE+LPLERLRS+AERRMLKEGEDEPMLSRALQSIVDLV+SAELA RVLREH  A A
Sbjct: 5461 AARVVQAGSGTPTVLRRIFRAWATALRSPSLPVKQQVCAELSRLLDEAVQAVDRAHRAELGPSSAPAAVRAVTAAGGSGESSAFSSGEAVRLQRAAVLNRLRQCVEILPLERLRSLAERRMLKEGEDEPMLSRALQSIVDLVSSAELALRVLREHDQATA 5620
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7528.16421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI1.410e-5675.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE5.310e-5273.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7528contigL-elsbetiae_contig7528:6434..6907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.6e-50
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size475
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.6152322-CDS-L-elsbetiae_contig7528:6433..69071622816836.6152322-CDS-L-elsbetiae_contig7528:6433..6907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 6434..6907 +
1691683850.5315824-CDS-L-elsbetiae_contig7528:6433..69071691683850.5315824-CDS-L-elsbetiae_contig7528:6433..6907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 6434..6907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7528.16421.1prot_L-elsbetiae_contig7528.16421.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7528 6434..6907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7528.16421.1

>prot_L-elsbetiae_contig7528.16421.1 ID=prot_L-elsbetiae_contig7528.16421.1|Name=mRNA_L-elsbetiae_contig7528.16421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
AARVVQAGSGAPAAPRRIFHAWTTGLRSPSLPVKQQVCAELSRLLDEAVQ
DVDRAQRESAPAQVAAVGADGAGDEKGAEPAAVLRRAAAVRRLRQCVELL
PLERLRSVAERRMLKEGEDEPMLSRALQSIVDLVASAELASRVLREHQAA
AAVAAAVD
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mRNA from alignment at L-elsbetiae_contig7528:6434..6907+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7528.16421.1 ID=mRNA_L-elsbetiae_contig7528.16421.1|Name=mRNA_L-elsbetiae_contig7528.16421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:6434..6907+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCAGGGTCGTGCAGGCCGGCTCGGGGGCGCCGGCCGCTCCGCGCAG
GATATTCCACGCCTGGACGACGGGGCTGCGGTCGCCGTCCCTGCCGGTGA
AGCAGCAGGTGTGCGCGGAGCTGAGCAGGCTGCTGGACGAGGCCGTGCAG
GACGTTGACCGGGCCCAACGCGAAAGCGCTCCCGCTCAAGTCGCCGCCGT
TGGAGCCGATGGTGCAGGTGACGAGAAAGGAGCGGAGCCGGCGGCGGTTC
TGCGGCGGGCGGCCGCGGTGCGGCGCCTGAGGCAGTGTGTCGAGCTCCTG
CCTCTCGAGAGGCTGCGGTCGGTGGCGGAGCGTCGCATGCTGAAGGAGGG
AGAAGACGAGCCGATGCTTTCTAGGGCCCTGCAGTCCATTGTGGACCTCG
TCGCCTCGGCGGAGCTGGCGTCACGGGTTCTTCGAGAGCACCAGGCGGCG
GCGGCGGTGGCAGCGGCGGTAGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7528:6434..6907+

>mRNA_L-elsbetiae_contig7528.16421.1 ID=mRNA_L-elsbetiae_contig7528.16421.1|Name=mRNA_L-elsbetiae_contig7528.16421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:6434..6907+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCAGGGTCGTGCAGGCCGGCTCGGGGGCGCCGGCCGCTCCGCGCAG
GATATTCCACGCCTGGACGACGGGGCTGCGGTCGCCGTCCCTGCCGGTGA
AGCAGCAGGTGTGCGCGGAGCTGAGCAGGCTGCTGGACGAGGCCGTGCAG
GACGTTGACCGGGCCCAACGCGAAAGCGCTCCCGCTCAAGTCGCCGCCGT
TGGAGCCGATGGTGCAGGTGACGAGAAAGGAGCGGAGCCGGCGGCGGTTC
TGCGGCGGGCGGCCGCGGTGCGGCGCCTGAGGCAGTGTGTCGAGCTCCTG
CCTCTCGAGAGGCTGCGGTCGGTGGCGGAGCGTCGCATGCTGAAGGAGGG
AGAAGACGAGCCGATGCTTTCTAGGGCCCTGCAGTCCATTGTGGACCTCG
TCGCCTCGGCGGAGCTGGCGTCACGGGTTCTTCGAGAGCACCAGGCGGCG
GCGGCGGTGGCAGCGGCGGTAGATGCCGCCAGGGTCGTGCAGGCCGGCTC
GGGGGCGCCGGCCGCTCCGCGCAGGATATTCCACGCCTGGACGACGGGGC
TGCGGTCGCCGTCCCTGCCGGTGAAGCAGCAGGTGTGCGCGGAGCTGAGC
AGGCTGCTGGACGAGGCCGTGCAGGACGTTGACCGGGCCCAACGCGAAAG
CGCTCCCGCTCAAGTCGCCGCCGTTGGAGCCGATGGTGCAGGTGACGAGA
AAGGAGCGGAGCCGGCGGCGGTTCTGCGGCGGGCGGCCGCGGTGCGGCGC
CTGAGGCAGTGTGTCGAGCTCCTGCCTCTCGAGAGGCTGCGGTCGGTGGC
GGAGCGTCGCATGCTGAAGGAGGGAGAAGACGAGCCGATGCTTTCTAGGG
CCCTGCAGTCCATTGTGGACCTCGTCGCCTCGGCGGAGCTGGCGTCACGG
GTTCTTCGAGAGCACCAGGCGGCGGCGGCGGTGGCAGCGGCGGTAGAT
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