mRNA_L-elsbetiae_contig7528.16420.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7528.16420.1
Unique NamemRNA_L-elsbetiae_contig7528.16420.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7528.16420.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 2.390e-76
Identity = 154/223 (69.06%), Postives = 167/223 (74.89%), Query Frame = 1 
Query:    1 RDDRLFGSRQGWRLPSGGGSGLGVAGGRGRG-DAVSRADSRVPGERRAIVIGHASVSGCWAAMASMSVAAAKQKIASTAATLAVLHCRKILLTVLLQCHNEVAQTATGGGQAAADSLLSQRVAALVGARDSPLPXXXXXXXXXAVTSRGSGEVAVSSPRSSSTASRTRAASRQFSSFLQLVLFRGWQPGWWPLADGGXXXXEDYQAEAEAGVRRGREAAGEDD 666
            RDDRLFGSRQGWRLPSGG SGLG+A GRG G DA  RADSRVPG+RRA V+GHASVSGCWAAMA++S +AAKQKIASTAATLAVLHCRKILLTVLLQ H +V       G AAAD+LLSQRVAALVG RDSPLP              GSGEV  +SPR+SST+ RTRAASRQFSSFLQLVLFRGW PGWWPLAD       +     EAG    RE   E+D
Sbjct: 4553 RDDRLFGSRQGWRLPSGGDSGLGLADGRGSGGDATRRADSRVPGDRRASVVGHASVSGCWAAMATLSASAAKQKIASTAATLAVLHCRKILLTVLLQSHRDVVAQTADRGAAAADALLSQRVAALVGVRDSPLPAVGGKAG-------GSGEVVAASPRASSTSLRTRAASRQFSSFLQLVLFRGWHPGWWPLADNSSGRWSESLEAGEAGAGGRREDGEEED 4768
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BLAST of mRNA_L-elsbetiae_contig7528.16420.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 6.060e-76
Identity = 150/212 (70.75%), Postives = 163/212 (76.89%), Query Frame = 1 
Query:    1 RDDRLFGSRQGWRLPSGGGSGLGVAGGRGRG-DAVSRADSRVPGERRAIVIGHASVSGCWAAMASMSVAAAKQKIASTAATLAVLHCRKILLTVLLQCHNEVAQTATGGGQAAADSLLSQRVAALVGARDSPLPXXXXXXXXXAVTSRGSGEVAVSSPRSSSTASRTRAASRQFSSFLQLVLFRGWQPGWWPLADGGXXXXEDYQAEAEAGV 633
            +DDRLFGSRQGWRLPSGG SGLG+A  RG G DA  +ADSRVPG+RRA V+GHASVSGCWAAMA++S +AAKQKIASTAATLAVLHCRKILLTVLLQ H EVA    G G AAAD+LLSQRVAALVG RDSPLP              GSGEV  +SPR+SSTA RTRAA+RQFSSFLQLVLFRGW PGWWPLAD       +     EAG 
Sbjct: 5115 QDDRLFGSRQGWRLPSGGDSGLGLADARGSGGDATRKADSRVPGDRRASVVGHASVSGCWAAMATLSASAAKQKIASTAATLAVLHCRKILLTVLLQSHREVAAQTAGEGAAAADALLSQRVAALVGVRDSPLPAVGGKAG-------GSGEVVTASPRASSTALRTRAAARQFSSFLQLVLFRGWHPGWWPLADSSSGRWSESLEAGEAGA 5319
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7528.16420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI2.390e-7669.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE6.060e-7670.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7528contigL-elsbetiae_contig7528:5357..6067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue4.4e-68
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size711
Cds size711
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.5742948-CDS-L-elsbetiae_contig7528:5356..60671622816836.5742948-CDS-L-elsbetiae_contig7528:5356..6067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 5357..6067 +
1691683850.5165565-CDS-L-elsbetiae_contig7528:5356..60671691683850.5165565-CDS-L-elsbetiae_contig7528:5356..6067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7528 5357..6067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7528.16420.1prot_L-elsbetiae_contig7528.16420.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7528 5357..6067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7528.16420.1

>prot_L-elsbetiae_contig7528.16420.1 ID=prot_L-elsbetiae_contig7528.16420.1|Name=mRNA_L-elsbetiae_contig7528.16420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
RDDRLFGSRQGWRLPSGGGSGLGVAGGRGRGDAVSRADSRVPGERRAIVI
GHASVSGCWAAMASMSVAAAKQKIASTAATLAVLHCRKILLTVLLQCHNE
VAQTATGGGQAAADSLLSQRVAALVGARDSPLPPPPPTTTTVAVTSRGSG
EVAVSSPRSSSTASRTRAASRQFSSFLQLVLFRGWQPGWWPLADGGGGGG
EDYQAEAEAGVRRGREAAGEDDAAGRRENNGDREEDG
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mRNA from alignment at L-elsbetiae_contig7528:5357..6067+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7528.16420.1 ID=mRNA_L-elsbetiae_contig7528.16420.1|Name=mRNA_L-elsbetiae_contig7528.16420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=711bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:5357..6067+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGACGATAGGCTTTTCGGCTCTCGTCAGGGGTGGCGCCTGCCCTCCGG
CGGTGGCTCCGGCTTAGGGGTTGCGGGCGGCCGCGGCCGTGGGGACGCGG
TCTCGAGGGCCGACTCCCGCGTGCCCGGAGAGCGGAGGGCGATCGTGATC
GGCCACGCCAGCGTTTCCGGTTGCTGGGCGGCGATGGCGAGCATGTCCGT
CGCGGCAGCCAAGCAAAAGATCGCGAGCACGGCCGCGACGCTCGCCGTGC
TGCACTGCCGCAAGATCTTGCTGACCGTGCTGCTGCAGTGCCACAACGAG
GTGGCGCAGACGGCGACGGGAGGAGGGCAGGCGGCGGCCGACTCGTTGCT
CTCTCAGCGCGTCGCGGCCCTGGTCGGCGCCCGGGACTCGCCGTTGCCGC
CGCCGCCGCCGACGACGACGACCGTGGCGGTCACGAGCAGGGGCAGCGGT
GAGGTCGCCGTTTCTTCGCCGCGATCCTCTTCGACGGCCTCAAGAACAAG
GGCGGCCTCTCGCCAGTTCTCTTCCTTCTTACAGCTCGTCCTGTTCCGCG
GATGGCAGCCCGGCTGGTGGCCCCTGGCCGATGGTGGCGGCGGCGGGGGC
GAGGACTACCAAGCGGAGGCTGAGGCCGGAGTCAGGCGGGGACGGGAAGC
CGCCGGCGAGGACGATGCCGCCGGCCGGAGGGAGAACAACGGCGACAGGG
AGGAGGACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7528:5357..6067+

>mRNA_L-elsbetiae_contig7528.16420.1 ID=mRNA_L-elsbetiae_contig7528.16420.1|Name=mRNA_L-elsbetiae_contig7528.16420.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig7528:5357..6067+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGACGATAGGCTTTTCGGCTCTCGTCAGGGGTGGCGCCTGCCCTCCGG
CGGTGGCTCCGGCTTAGGGGTTGCGGGCGGCCGCGGCCGTGGGGACGCGG
TCTCGAGGGCCGACTCCCGCGTGCCCGGAGAGCGGAGGGCGATCGTGATC
GGCCACGCCAGCGTTTCCGGTTGCTGGGCGGCGATGGCGAGCATGTCCGT
CGCGGCAGCCAAGCAAAAGATCGCGAGCACGGCCGCGACGCTCGCCGTGC
TGCACTGCCGCAAGATCTTGCTGACCGTGCTGCTGCAGTGCCACAACGAG
GTGGCGCAGACGGCGACGGGAGGAGGGCAGGCGGCGGCCGACTCGTTGCT
CTCTCAGCGCGTCGCGGCCCTGGTCGGCGCCCGGGACTCGCCGTTGCCGC
CGCCGCCGCCGACGACGACGACCGTGGCGGTCACGAGCAGGGGCAGCGGT
GAGGTCGCCGTTTCTTCGCCGCGATCCTCTTCGACGGCCTCAAGAACAAG
GGCGGCCTCTCGCCAGTTCTCTTCCTTCTTACAGCTCGTCCTGTTCCGCG
GATGGCAGCCCGGCTGGTGGCCCCTGGCCGATGGTGGCGGCGGCGGGGGC
GAGGACTACCAAGCGGAGGCTGAGGCCGGAGTCAGGCGGGGACGGGAAGC
CGCCGGCGAGGACGATGCCGCCGGCCGGAGGGAGAACAACGGCGACAGGG
AGGAGGACGGGAGAGACGATAGGCTTTTCGGCTCTCGTCAGGGGTGGCGC
CTGCCCTCCGGCGGTGGCTCCGGCTTAGGGGTTGCGGGCGGCCGCGGCCG
TGGGGACGCGGTCTCGAGGGCCGACTCCCGCGTGCCCGGAGAGCGGAGGG
CGATCGTGATCGGCCACGCCAGCGTTTCCGGTTGCTGGGCGGCGATGGCG
AGCATGTCCGTCGCGGCAGCCAAGCAAAAGATCGCGAGCACGGCCGCGAC
GCTCGCCGTGCTGCACTGCCGCAAGATCTTGCTGACCGTGCTGCTGCAGT
GCCACAACGAGGTGGCGCAGACGGCGACGGGAGGAGGGCAGGCGGCGGCC
GACTCGTTGCTCTCTCAGCGCGTCGCGGCCCTGGTCGGCGCCCGGGACTC
GCCGTTGCCGCCGCCGCCGCCGACGACGACGACCGTGGCGGTCACGAGCA
GGGGCAGCGGTGAGGTCGCCGTTTCTTCGCCGCGATCCTCTTCGACGGCC
TCAAGAACAAGGGCGGCCTCTCGCCAGTTCTCTTCCTTCTTACAGCTCGT
CCTGTTCCGCGGATGGCAGCCCGGCTGGTGGCCCCTGGCCGATGGTGGCG
GCGGCGGGGGCGAGGACTACCAAGCGGAGGCTGAGGCCGGAGTCAGGCGG
GGACGGGAAGCCGCCGGCGAGGACGATGCCGCCGGCCGGAGGGAGAACAA
CGGCGACAGGGAGGAGGACGGG
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