mRNA_L-elsbetiae_contig7525.16417.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7525.16417.1
Unique NamemRNA_L-elsbetiae_contig7525.16417.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7525.16417.1 vs. uniprot
Match: A0A6H5K763_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K763_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.990e-24
Identity = 80/197 (40.61%), Postives = 96/197 (48.73%), Query Frame = 1 
Query:    4 DECSSCLDRLQDAGLTIGGIDFELCGELYADVCVTADSVGCNTENAELVDLLTCVAEDQFGCDDFTTCEAATATLVEXXXXXXXXXXXXXXXXXXXSIATTIVTPXXXXXXPILPPPTAAPSPGSRGSISVXXXXXXADGSAAAS--TPFPSPAL-FEETAQTMAPSESSAAPTGIDGLRGSMLSVTPTAAPT-GFE 582
            DECSSCLD LQ+  L + G DFELC +LYA VC  A+++GCNT+N ELV+ LTCVA+D FGC DFTTC    A +          XX           A +         X       +APS GSRG +          G  A    T  P+PA  FE    T+APS             G + S TPTA PT GFE
Sbjct:   53 DECSSCLDALQENDLPLIGGDFELCDDLYASVCAAAEAIGCNTDNEELVEFLTCVADDSFGCGDFTTCADFPAEVETPPPTVPPSXXATTTAAAVPXPAPSFPFXATAAPXXXXXXXXSAPSSGSRGGLPFSPTAAPTGGGNAKGRDTASPTPASSFEGFMDTLAPSAXXXXXXXXXLRGGDVFSDTPTAVPTVGFE 249
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BLAST of mRNA_L-elsbetiae_contig7525.16417.1 vs. uniprot
Match: D8LCK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK8_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 8.060e-23
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    4 DECSSCLDRLQDAGLTIGGIDFELCGELYADVCVTADSVGCNTENAELVDLLTCVAEDQFGCDDFTTC 207
            DECSSCLD LQ+  L I G DFELCG+LYA VC  A++VGCNT+N +LV+ LTCVA+D +GC DFTTC
Sbjct:   55 DECSSCLDALQENDLPILGGDFELCGDLYAGVCAAAEAVGCNTDNEDLVEFLTCVADDSYGCGDFTTC 122
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7525.16417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K763_9PHAE4.990e-2440.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK8_ECTSI8.060e-2367.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7525contigL-elsbetiae_contig7525:6984..7653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_002510.1
Exons1
Model size670
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.3853617-CDS-L-elsbetiae_contig7525:6983..76521622816836.3853617-CDS-L-elsbetiae_contig7525:6983..7652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7525 6984..7652 +
1691683850.4134848-CDS-L-elsbetiae_contig7525:6983..76521691683850.4134848-CDS-L-elsbetiae_contig7525:6983..7652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7525 6984..7652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7525.16417.1prot_L-elsbetiae_contig7525.16417.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7525 6984..7652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7525.16417.1

>prot_L-elsbetiae_contig7525.16417.1 ID=prot_L-elsbetiae_contig7525.16417.1|Name=mRNA_L-elsbetiae_contig7525.16417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=223bp
SDECSSCLDRLQDAGLTIGGIDFELCGELYADVCVTADSVGCNTENAELV
DLLTCVAEDQFGCDDFTTCEAATATLVEATEAPATAAPSTAPATPAPSIA
TTIVTPTATPTTPILPPPTAAPSPGSRGSISVPTAAPTADGSAAASTPFP
SPALFEETAQTMAPSESSAAPTGIDGLRGSMLSVTPTAAPTGFEGPPTAA
PTGFEGPGDLEDSASGGISSRHT
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mRNA from alignment at L-elsbetiae_contig7525:6984..7653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7525.16417.1 ID=mRNA_L-elsbetiae_contig7525.16417.1|Name=mRNA_L-elsbetiae_contig7525.16417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=670bp|location=Sequence derived from alignment at L-elsbetiae_contig7525:6984..7653+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGACGAGTGCTCCTCCTGCCTTGACCGCCTCCAGGACGCCGGCTTAAC
CATCGGGGGCATCGACTTCGAGCTGTGCGGCGAGCTGTACGCCGACGTGT
GCGTGACGGCGGATTCCGTCGGCTGCAACACCGAGAACGCCGAGCTGGTG
GACCTGCTGACGTGTGTCGCCGAGGACCAGTTCGGCTGCGATGATTTCAC
GACGTGCGAAGCGGCAACGGCCACCCTGGTCGAGGCTACGGAAGCGCCCG
CGACCGCCGCCCCGTCCACCGCTCCGGCGACGCCTGCACCTTCCATCGCC
ACAACAATAGTCACCCCCACCGCCACGCCCACCACACCCATCCTTCCACC
CCCTACGGCAGCACCCTCCCCAGGCTCTCGCGGAAGCATCTCTGTTCCTA
CGGCCGCGCCCACCGCAGACGGTTCGGCGGCCGCCAGCACCCCCTTCCCG
TCGCCCGCATTGTTCGAGGAGACTGCACAAACGATGGCGCCGTCTGAAAG
TAGCGCAGCGCCGACCGGAATCGACGGGCTTCGGGGAAGCATGCTTTCGG
TGACCCCTACGGCAGCTCCGACCGGTTTCGAGGGTCCTCCCACGGCAGCT
CCGACTGGTTTCGAGGGTCCAGGGGACCTCGAGGACAGCGCAAGCGGTGG
GATTTCTTCCAGGCACACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7525:6984..7653+

>mRNA_L-elsbetiae_contig7525.16417.1 ID=mRNA_L-elsbetiae_contig7525.16417.1|Name=mRNA_L-elsbetiae_contig7525.16417.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig7525:6984..7653+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGACGAGTGCTCCTCCTGCCTTGACCGCCTCCAGGACGCCGGCTTAAC
CATCGGGGGCATCGACTTCGAGCTGTGCGGCGAGCTGTACGCCGACGTGT
GCGTGACGGCGGATTCCGTCGGCTGCAACACCGAGAACGCCGAGCTGGTG
GACCTGCTGACGTGTGTCGCCGAGGACCAGTTCGGCTGCGATGATTTCAC
GACGTGCGAAGCGGCAACGGCCACCCTGGTCGAGGCTACGGAAGCGCCCG
CGACCGCCGCCCCGTCCACCGCTCCGGCGACGCCTGCACCTTCCATCGCC
ACAACAATAGTCACCCCCACCGCCACGCCCACCACACCCATCCTTCCACC
CCCTACGGCAGCACCCTCCCCAGGCTCTCGCGGAAGCATCTCTGTTCCTA
CGGCCGCGCCCACCGCAGACGGTTCGGCGGCCGCCAGCACCCCCTTCCCG
TCGCCCGCATTGTTCGAGGAGACTGCACAAACGATGGCGCCGTCTGAAAG
TAGCGCAGCGCCGACCGGAATCGACGGGCTTCGGGGAAGCATGCTTTCGG
TGACCCCTACGGCAGCTCCGACCGGTTTCGAGGGTCCTCCCACGGCAGCT
CCGACTGGTTTCGAGGGTCCAGGGGACCTCGAGGACAGCGCAAGCGGTGG
GATTTCTTCCAGGCACACAAGCGACGAGTGCTCCTCCTGCCTTGACCGCC
TCCAGGACGCCGGCTTAACCATCGGGGGCATCGACTTCGAGCTGTGCGGC
GAGCTGTACGCCGACGTGTGCGTGACGGCGGATTCCGTCGGCTGCAACAC
CGAGAACGCCGAGCTGGTGGACCTGCTGACGTGTGTCGCCGAGGACCAGT
TCGGCTGCGATGATTTCACGACGTGCGAAGCGGCAACGGCCACCCTGGTC
GAGGCTACGGAAGCGCCCGCGACCGCCGCCCCGTCCACCGCTCCGGCGAC
GCCTGCACCTTCCATCGCCACAACAATAGTCACCCCCACCGCCACGCCCA
CCACACCCATCCTTCCACCCCCTACGGCAGCACCCTCCCCAGGCTCTCGC
GGAAGCATCTCTGTTCCTACGGCCGCGCCCACCGCAGACGGTTCGGCGGC
CGCCAGCACCCCCTTCCCGTCGCCCGCATTGTTCGAGGAGACTGCACAAA
CGATGGCGCCGTCTGAAAGTAGCGCAGCGCCGACCGGAATCGACGGGCTT
CGGGGAAGCATGCTTTCGGTGACCCCTACGGCAGCTCCGACCGGTTTCGA
GGGTCCTCCCACGGCAGCTCCGACTGGTTTCGAGGGTCCAGGGGACCTCG
AGGACAGCGCAAGCGGTGGGATTTCTTCCAGGCACACA
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