|
Homology
BLAST of mRNA_L-elsbetiae_contig7520.16411.1 vs. uniprot
Match: D7FTH2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH2_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 5.650e-7 Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 3
Query: 3 SYGVEGTKRAELCSQHAREGMVDVVSKRCRHPGCNK 110
S+G +G+K+AE CSQH ++GMVDVV+++C HPGC K
Sbjct: 5 SFGTDGSKKAEFCSQHRQQGMVDVVTRKCGHPGCTK 40
BLAST of mRNA_L-elsbetiae_contig7520.16411.1 vs. uniprot
Match: D7FUJ5_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ5_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 2.900e-6 Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 3
Query: 3 SYGVEGTKRAELCSQHAREGMVDVVSKRCRHPGCNK 110
SYG +G K+AE C +HA +GM DVVSKRC HPGC K
Sbjct: 5 SYGKDGGKKAEFCVRHALQGMFDVVSKRCGHPGCTK 40
BLAST of mRNA_L-elsbetiae_contig7520.16411.1 vs. uniprot
Match: D7FHY3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY3_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 1.220e-5 Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 3
Query: 3 SYGVEGTKRAELCSQHAREGMVDVVSKRCRHPGCNKGPS 119
SYG K+AE CS+H++ GM++VV+KRC HPGC K PS
Sbjct: 42 SYGDGRNKKAEFCSKHSKPGMINVVNKRCGHPGCMKQPS 80
BLAST of mRNA_L-elsbetiae_contig7520.16411.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 1.540e-5 Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 3
Query: 24 KRAELCSQHAREGMVDVVSKRCRHPGCNKGPS 119
K AE CSQH ++ MV+VVSKRC HPGC K PS
Sbjct: 20 KNAEFCSQHKQQDMVNVVSKRCGHPGCTKQPS 51
BLAST of mRNA_L-elsbetiae_contig7520.16411.1 vs. uniprot
Match: A0A6H5L8B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B4_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 7.010e-5 Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = 3
Query: 3 SYGVEGTKRAELCSQHAREGMVDVVSKRCRHPGCNKG 113
SYG K+AE CSQH + GMV+VVSKRC HPG G
Sbjct: 41 SYGEAHGKKAEFCSQHMQPGMVNVVSKRCGHPGMRNG 77
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 60.5 |
Seed ortholog evalue | 1.1e-06 |
Seed eggNOG ortholog | 2880.D7G985 |
Hectar predicted targeting category | other localisation |
EggNOG OGs | 29ZCP@1,2RXW0@2759 |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 2 |
Model size | 1092 |
Cds size | 615 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816835.81476-UTR-L-elsbetiae_contig7520:4155..4542 | 1622816835.81476-UTR-L-elsbetiae_contig7520:4155..4542 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7520 4156..4542 - |
1691683850.0029044-UTR-L-elsbetiae_contig7520:4155..4542 | 1691683850.0029044-UTR-L-elsbetiae_contig7520:4155..4542 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7520 4156..4542 - |
1622816835.8261082-UTR-L-elsbetiae_contig7520:8904..8932 | 1622816835.8261082-UTR-L-elsbetiae_contig7520:8904..8932 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7520 8905..8932 - |
1691683850.0163329-UTR-L-elsbetiae_contig7520:8904..8932 | 1691683850.0163329-UTR-L-elsbetiae_contig7520:8904..8932 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7520 8905..8932 - |
1622816835.8544357-UTR-L-elsbetiae_contig7520:9547..9609 | 1622816835.8544357-UTR-L-elsbetiae_contig7520:9547..9609 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7520 9548..9609 - |
1691683850.036708-UTR-L-elsbetiae_contig7520:9547..9609 | 1691683850.036708-UTR-L-elsbetiae_contig7520:9547..9609 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig7520 9548..9609 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816835.8421924-CDS-L-elsbetiae_contig7520:8932..9547 | 1622816835.8421924-CDS-L-elsbetiae_contig7520:8932..9547 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7520 8933..9547 - |
1691683850.0264158-CDS-L-elsbetiae_contig7520:8932..9547 | 1691683850.0264158-CDS-L-elsbetiae_contig7520:8932..9547 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7520 8933..9547 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7520.16411.1 >prot_L-elsbetiae_contig7520.16411.1 ID=prot_L-elsbetiae_contig7520.16411.1|Name=mRNA_L-elsbetiae_contig7520.16411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
MVDVVSKRCRHPGCNKGPSYGVEGTKKAELCVQHAREGMVNVVSKRCGHQ GRNKRSSSGVPGRISELCSQHSKQGMVSAMGSPVCNNNEGSGVGGKRGRG EPEDIGAPVRGAATKKPSRLASAVPAFPVAVKAEEEGDGVTETSSSTTTG TSKRARPVGFTPTVPAAIKAEKARRQVAAPAESSPSESESELEAAAGAEV AISA* back to topmRNA from alignment at L-elsbetiae_contig7520:4156..9609- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7520.16411.1 ID=mRNA_L-elsbetiae_contig7520.16411.1|Name=mRNA_L-elsbetiae_contig7520.16411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5454bp|location=Sequence derived from alignment at L-elsbetiae_contig7520:4156..9609- (Laminarionema elsbetiae ELsaHSoW15) CGTCGTACGGCGTCGAAGGCACCAAGAGGGCTGAACTCTGCTCTCAGCAC
GCCAGGGAGGGGATGGTGGACGTGGTCAGCAAGAGGTGTAGGCACCCAGG
GTGCAACAAGGGCCCGTCGTACGGCGTCGAAGGCACCAAGAAGGCTGAGC
TCTGCGTCCAGCACGCCAGGGAGGGGATGGTGAACGTGGTCAGCAAGAGG
TGTGGGCACCAAGGGCGCAATAAACGGTCTTCATCTGGAGTCCCGGGGAG
AATATCAGAGTTGTGTTCCCAGCACTCCAAGCAGGGGATGGTGTCAGCAA
TGGGCAGCCCGGTCTGCAACAACAATGAGGGCAGCGGGGTTGGTGGGAAG
CGTGGGCGTGGCGAACCAGAAGATATCGGTGCCCCCGTCCGCGGCGCGGC
GACGAAGAAGCCATCCCGACTAGCCAGCGCCGTTCCTGCCTTCCCTGTCG
CTGTCAAAGCGGAGGAGGAGGGTGACGGGGTGACGGAAACTTCTTCCAGC
ACAACCACGGGCACAAGCAAGCGAGCCCGCCCGGTCGGTTTTACCCCAAC
GGTCCCGGCGGCCATCAAAGCAGAGAAAGCGCGAAGACAAGTGGCCGCGC
CTGCGGAGAGTTCACCTTCGGAGTCAGAGTCAGAGTTAGAGGCTGCAGCC
GGGGCAGAAGTGGCCATCTCGGCCTAGGCAGAGTTCGGAAGCTAGCTGGC
CGAAGGTGCGTTGGGTGTGGAGTGTGGTCGTGGCGGTCTTCCTGCCTAAA
TAGGTAAGTGTGCCAGCTTAGGCATCCCCATACATCGGCGGTGTTGGCCT
GTACACCCCCGGTTGGTGATGTTGGCTTGTCCAGTTTTGGTTTAACCTTG
CATGTAGCATAGCGTGTAGAAGGGAGCGGGGACACGAAGACAAAAAATCC
CGCTGAACTCGAACGCCTCGCATTTTGAAAGACAGGTGTTTAGTTGTTGC
TGGGAGCTGCAACACGTGTGGCTGGTATACGAAAAATAAAATGGACCCGA
AGGATCAGCAAAGCGATAAAAACCAAAGACAAATAGTGTGGAGCCCCCCG
CTCCCTGATATTGTTGCTCTGAATCCACGCGGTCATTCGTAACCGCTGAT
GCTCCTCGCACAAATAGCCGATTGCAACGAAAAGAGAAGGAGACCTCAAG
GTGTCTGCTCCCCACGTCCGCAAGGAGTCGTTATTCCGCCATTTATCTTA
GAAGCGGAGAGCTGCTGTGTGGCCGGCGCTAGACAGAAGCAGCAGTTGCT
TGGGATGCAATTTCAATGGTGAGCGCCAAGCTCAGGAGTGCACCAAATCG
CTTGAAAGTCGGCGACCGTAGATATACAAGGTTTGGGGCGCTAGCACGCG
CCCCCGCTTGTATTGTAAGCGCATCCAAGGTATTGTAGAGTTTAATTGGA
AAACACAAACAGCAGTTGTTTTTTTAATAGATTGCTCTGCCCGGGGCATC
GCGGGTACCAATTTTCTTTCCATTTTAAAGAATCTCTGTATGATGAAAAA
CTTGGATGGCTGGCGTACATGCCACGCCGATGACCCTACTACGCAGATGA
ACCTGGATTGAAAATAATAGTGAAAGAAAAAAAGAGCACGTCACGCAAAC
ATGTGTACTACAGCCGCACAGTTGGCACTCCCGACGGTGTACGGACACGT
CTGGGGACGCTCGTTGCACTCCTATCGTGTGTTGAGTGCGCAAACAAACT
TGGACGACAGGCAGAAAAGCTAAACAGAGCGCCATCGAACGGAAAGGGTA
TGCCACACAACATTTCTATGTGCCTCGGCCGCCGTTGACACTCCCGGCAA
CCTACAGACGTCTGAGAACACTCGTTGGCTAACGTGAAAAAGAGCACGCG
ATGCAAACATGTGCTGAGGAGCACGCGACCCAAACATGTACTACAGCCGC
ACAGTTGGTACTCCCGACGGTGTGCGGACCCCTCTGGGGACGCTCGTTGC
TTAGTGTAAAATACTTGGACGCAAAAATCAAATGCAACAAAGTAGATGCC
CTGAGAACCCTCGTTTCCTATTGCAAACACTTGGACGGCAGGCAAACACG
CAAAACGATGTAATGGCGGGACGTGCAGACCCAGGTACCATCACAGCACC
CACAATAATATCAACATACAAGATCACGAAGCGAGCTCATGAGAGCACAG
GGGACGGGGATGATGCAAGACGAAAGAAAAAATAATAACCCAGATCTTTG
AACCAAAGATTCTGAACTCGAACGCCTCTTTTCCCGCAAAAAGCAGGTCC
CGTCCTTAATTAATCGCCACGTTATAGATGAGAAGTAACAGCTGCCCTCT
TAAGCACAGCAACAGCACCAACCGGGTGCTTCTGTGTGGGCGCTCCGCCC
TTGATCAACACGCTCCGCCTTTGTCAACACAGCTGTGCAGGTCAACACAG
CTGCGCAGGTCTGTGCCCCTCAGCCGTGTGTTATTCTTACCGAAAAAAAA
ACACAGCTGCTGCTCTGACGTGTTTTTCTTCAACTGCAAGAGCAGCTGCT
GTCATCCTGACGTTCGTTTGGGCCATTGAGTACCGATAGCCTGCTGATGA
CATATCGGAACAGTAGTTTTCCCGTTCAAATACATCATTGTATTTACAGA
TCTAAGGAGTATAGGTAGTCGGTGCACCTGCTGCCGCTGATTGTTGTACG
GGTGTACATTGTTTGGACACTAAACCAATGGAGAGGTGAAAGGAATCCTT
GAGGTTCACTGGAGCACTATGTGAAAAAACGTTTAGGAATCGAGTACAAC
TTCGCTGCAGAGCGACGTGAAGAAGTCACGCTCAACAATCGCAGCAAAAA
CGCCTCTTTGTATATTGTTTTGTGCTATGTGCGAAATAATGTACAAACCC
CAGCTGGACACTGCCAACAAAATTATTTTTTTACGCCGGTGACCGCGCAC
TCGAAAAACAGCAGTAGACTACTCTAGACAAAGTAACGCTACACCCCATC
CACAGATGACAGCCGACACCGATCATACCACACAGATGATGATGTGTAGG
AAGCAGTGGGAACGTCTGCGGAGTTGGAGGGCGTGGTGGGGAACGCAAAG
ACGGGAACTTTCGAAACAACGCGAGCAGCACAGCGTCGGTTGCTGTTGCA
AACCCCGATAACCCCACCTATCTGTCAACCTCTCTCTGCTGCTGACACAA
CGGGAAACAGCACCGACGCGCGCTGCTGCTGTGTGTTCACATCTCTTGTT
CGGTCTTCTAGTGTGATGTGCATTGCTGTGTTGTGTGCATCGCGTGTGTC
GTCATGACTGTTGTCACCCGATGTTTACAGCAGACTGCTGTAAACATCGG
GTGACAAGATGCGACGGTCGTATCTGATGACAAACTTGGAGATTGACAAT
GAGACTTGGCAGAGAGCAGCTACGGCTGTGTGTCGAGGCGCCCGCGGAAG
GAATAAGCGATTGCTTCGTCTTTGAGAAATACATCCCTAAAAAACGAACA
TCTCCGAGATCAATAGTCTAGTCTTGGGGTTTAGAGTCTGCTCCAAAAGT
CGACGGCCGTATCTGATCGAAACGTTCGAGATCGAGGTTGCCACTTGGCA
CAGAGCAGCTACTGCCGTGTGTTGAGGTGCCCGTGCAAGGAATAATCGTT
TGGTTTGAGTTTGAGAAAGATAGCCGCAAAAAGCTGAAATCAATAGGGAC
TATAACGTGTGGAGAGGGGTCACTTTTTTTTAGGGATTTTTTTTTTTTTT
TAAACAAAATGGGCTAAAAATTGGTCACAAGAAAAGACAGTGCTCAAACG
AAAGGCCTGAAAGAACCAACCAATTGAAAATTGGAACATCTAATAGATAG
ATATTTATAGAGATCTAGATTACTTCCTCACAATTCCGAAAAGCACGTCA
GCAGGAGGATAACATGGAGTTACATGAAGGATGTGCAGGATAACTGCCCT
CCTCCTTGTATTGACGGCGCTGCTGCGAGTGTACCCGCGGGCTCAACAAA
ACGCATACATAAAGTGCCTTGCAAGATACCCATAGCTACACATCTACACA
TGCTGCATCTACACATCTACACAGCTACTAGCAGTCGGCTCGCAATTGAC
CCCTTCGGCGCGTTTACCATTTCGGCGAATAAAAGCGGAGTTTCAAGCGA
GAGCCAAATTAAAAAAAAAAACTGTTTGGTAGAGATAGATGTAGAAAAGT
ACGTAGTTAGATAGATAGCTTGATAAAGAGTCCATCGCTCTCATAAGAGA
GAAAGGTTTCAACCACAGTAGGGGAAGCGCGAGTAGCATACGGGGAAGCA
CGAGTAGCAATGCACAGACGCGCGCGAGGGACACCTTGGGGTAGCAACGC
CGAGAGTTTCTGGGTGGAAATAAGAAATAAGAGCCCTCTCAGACGAAATG
CGCCGAGAAAAAGAGACAGAGAGAGAGAAAGACACCGAGAGAGAAGGGAG
AGGGAGAGAGAGCGATAAGAGAGAGAAGCGAATGCTCGAATGCACTGTGA
AGTGCACTGCAGGCAGCCACACGCGAGGGGCATCTCGGGAGAGAAAGAGA
ATAGAGAAAGCGGATGAAGGATGCAGACCGTAATTTTCAGAATCCTGGAC
AGAGAACGAAATGAAGCCACCACAGTGATGACAGGGAGCGACGCGGAGAA
AAAATGTAATTTGAAATAGATCTATGTGAGCATAGAAGGGACACTGGGCG
CTCGATTTTTGGATCAACTCTGTGGCGCTCAAACCGACTCCGCCTCTCTG
ATCAAGAGGAGGGCAAAACACCCTCGCTTGTCTGCCTCCAAAACTATCTT
AAAACGTTCCTTCGCCGCGTCCGATCCAGCAACTTTGGACGGCATCGCCA
CTCTCTGTGTTTGTCCAATCTATCTGCCACTTTGGCCCGCTGGCATTGAA
ACCCCTTGTAAGCATCCGTTTGTTGGATCAATACTACAGTAAACTGCGCT
CTCCGGTGTGCTGAATCAGTTGCGCTGCGTGGGATCGTATTTCGATCACA
AAAAAAAGTCGTTTTTGATGGGAGGTGCAACACGTGTGCAGCCCTTTTGT
ATTTCACGGATGCATCTAAATGCACATTTGTTTCCCTTCTTCGCTGTTGT
CTACCGGTACCCCACAGGTTGACTGCGGCCAGCACAAAACCAGTGGCCAG
GGGTGGAACGACCTACTGTGTTCGAGGTAGTAGAGCGCTCAACTCGGTCG
CGGCGGAAGGGAAATCGAATCCCACCGGTTCTGCGCAATATTTTGGCCTG
CGTGGATAGTGGGCGGGAGTTGTATGGTCCGACCTGCGCGAGCAGCTTGG
GAGCTTTGGGGTGTCTGCTGCAGGGGGCAAGCGTTTTGATATCGTTTTCA
TAATGCTGCACTTCCGGGCCAGTTCAACGAGTCTTCTAGCGTGCACAGTA
GTTTCGGCGCGCGGAGTGTCTTTGTTGCGGACGTCGGGGGTCGATTTTTC
TGGTTTTCGACGCAGGATGCAAGAATTCAAAGATATTTCGTTATTTCGTA
GGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7520:4156..9609- >mRNA_L-elsbetiae_contig7520.16411.1 ID=mRNA_L-elsbetiae_contig7520.16411.1|Name=mRNA_L-elsbetiae_contig7520.16411.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig7520:4156..9609- (Laminarionema elsbetiae ELsaHSoW15) ATGGTGGACGTGGTCAGCAAGAGGTGTAGGCACCCAGGGTGCAACAAGGG CCCGTCGTACGGCGTCGAAGGCACCAAGAAGGCTGAGCTCTGCGTCCAGC ACGCCAGGGAGGGGATGGTGAACGTGGTCAGCAAGAGGTGTGGGCACCAA GGGCGCAATAAACGGTCTTCATCTGGAGTCCCGGGGAGAATATCAGAGTT GTGTTCCCAGCACTCCAAGCAGGGGATGGTGTCAGCAATGGGCAGCCCGG TCTGCAACAACAATGAGGGCAGCGGGGTTGGTGGGAAGCGTGGGCGTGGC GAACCAGAAGATATCGGTGCCCCCGTCCGCGGCGCGGCGACGAAGAAGCC ATCCCGACTAGCCAGCGCCGTTCCTGCCTTCCCTGTCGCTGTCAAAGCGG AGGAGGAGGGTGACGGGGTGACGGAAACTTCTTCCAGCACAACCACGGGC ACAAGCAAGCGAGCCCGCCCGGTCGGTTTTACCCCAACGGTCCCGGCGGC CATCAAAGCAGAGAAAGCGCGAAGACAAGTGGCCGCGCCTGCGGAGAGTT CACCTTCGGAGTCAGAGTCAGAGTTAGAGGCTGCAGCCGGGGCAGAAGTG GCCATCTCGGCCTAGATGGTGGACGTGGTCAGCAAGAGGTGTAGGCACCC AGGGTGCAACAAGGGCCCGTCGTACGGCGTCGAAGGCACCAAGAAGGCTG AGCTCTGCGTCCAGCACGCCAGGGAGGGGATGGTGAACGTGGTCAGCAAG AGGTGTGGGCACCAAGGGCGCAATAAACGGTCTTCATCTGGAGTCCCGGG GAGAATATCAGAGTTGTGTTCCCAGCACTCCAAGCAGGGGATGGTGTCAG CAATGGGCAGCCCGGTCTGCAACAACAATGAGGGCAGCGGGGTTGGTGGG AAGCGTGGGCGTGGCGAACCAGAAGATATCGGTGCCCCCGTCCGCGGCGC GGCGACGAAGAAGCCATCCCGACTAGCCAGCGCCGTTCCTGCCTTCCCTG TCGCTGTCAAAGCGGAGGAGGAGGGTGACGGGGTGACGGAAACTTCTTCC AGCACAACCACGGGCACAAGCAAGCGAGCCCGCCCGGTCGGTTTTACCCC AACGGTCCCGGCGGCCATCAAAGCAGAGAAAGCGCGAAGACAAGTGGCCG CGCCTGCGGAGAGTTCACCTTCGGAGTCAGAGTCAGAGTTAGAGGCTGCA GCCGGGGCAGAAGTGGCCATCTCGGCCTAG back to top
|