mRNA_L-elsbetiae_contig7504.16402.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7504.16402.1
Unique NamemRNA_L-elsbetiae_contig7504.16402.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: D7G8Q3_ECTSI (Mitochondrial ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 1.210e-165
Identity = 242/305 (79.34%), Postives = 267/305 (87.54%), Query Frame = 3 
Query:  147 RCTMRSFSFARRTRLQPTSMIGRFCCRELSATSQLPSKQQMDGFTVKDTRTPRPRVAKEKRKQYLAQRKASFEAEQNKAASLGLDWGIRSALLLERLPVIVEEYADWQRDFWDLQAQQAHYGMKFPAEMGFEYSDEKPLTMEQILERSPVSLAPRRTPADESNDRTTLDRALDERLVLIVKPKPGAAWRLPESAWEAGETIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQV-QSGSFGDKVFINRVQLICGQPTIVKSEAAEHLWVTKHEIGEYLGDAMGVYLKHVI 1058
            RCTM S S  RR +L+P +++    CRELS+ S L  KQQ++GFT+KD R PRPRVAK+KRKQYLA+RK +FEAEQ KA SLGLDWGIRSAL+LERLPVIVEEY DWQRDFWDLQ +QAHYG KFPAEMGF+Y DEK LTMEQ+LE+SPV LAPRRTPADESNDRTTLDRALDERLVLIVKP+ G  WRLPESAWE GETIRQ AERTAQQ+LLK+AT KGQRDDVAQLHFVGNCPAGWFWRT DEEQ  Q   FGDKVFINRVQLICGQPT+VK +AAEHLWVTKHEIGEYLG++MGVYLKH+I
Sbjct:    5 RCTMLSSSAVRRVKLRPLAVLLAPNCRELSS-SNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 308
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: W7TRZ1_9STRA (Mitochondrial ribosomal protein l46 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.670e-26
Identity = 82/246 (33.33%), Postives = 123/246 (50.00%), Query Frame = 3 
Query:  336 YLAQRKASFEAEQNKAASLGLDWGIRSALLLERLPVIVEEYADWQRDFWDLQAQQAHYGMKFPAEMGFE-YSDEKPLTMEQILERSPVSLAPRRTPADESNDRTTLDRALDERLVLIVK-PKPGAAWRLPESAWEAGE--------TIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQV-QSG---SFGDKVFINRVQLICGQPTIVKSEAAEHLWVTKHEIGEYLGDA 1031
            YL  R A     +  A    L W I +A ++ER P+I++E  DW+  + ++Q + A +G  FP E+     + E   + +++L   P  LAPR T AD  NDRTTL+RAL ERL L+++ P     W LP +  E G         ++R+  E T ++ L           D  + +   N P G  WR   E    ++G   ++GDKVF  R Q + G+  +V     E +WVT+ E+GEYL  A
Sbjct:  102 YLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFL----------GDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: A0A2P6VD62_9CHLO (Serine threonine-kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VD62_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 6.580e-20
Identity = 78/204 (38.24%), Postives = 110/204 (53.92%), Query Frame = 3 
Query:  417 ALLLERLPVIVEEYADWQRDFWDLQAQQAHYGMKFPAEMGFEYSDEKPLTMEQILERSPVSLAPRRTPADESNDRTTLDRALDERLVLIVKPKPGAAWRLPESAWEAGETIRQAAERT-AQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQVQSGSFGDKVFINRVQLICGQPTIVKSEA-AEHLWVTKHEIGEYL 1022
            A++ ERLPV+V E  +W+R++++ Q   A    K+  E+  E++D K   M++    S    APR T AD +NDR +L R LD+RL ++V+ K G  W LP+     GET+RQ AER  A  V L          +  + +FVGN PAG             G  G  +F +R QLI G P +      +EH+WVTK E+GEYL
Sbjct:   52 AVVFERLPVVVPEDPEWEREYFEWQDGLAG---KYRKELPREFTDLKDSEMKEDAGAS-YEPAPRVTAADHANDRRSLKRRLDQRLFMLVRQKGG--WTLPQQENAEGETMRQTAERALADAVEL----------EAVRPYFVGNAPAG---------HAPLGDAGT-LFFHRCQLIQGVPALRGGSGYSEHVWVTKEELGEYL 229
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: A0A4D9D2E5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.270e-19
Identity = 67/209 (32.06%), Postives = 104/209 (49.76%), Query Frame = 3 
Query:  447 VEEYADWQRDFWDLQAQQAHYGMKFPAEMGFE-YSDEKPLTMEQILERSPVSLAPRRTPADESNDRTTLDRALDERLVLIVK-PKPGAAWRLPESAWEAGE--------TIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQV-QSG---SFGDKVFINRVQLICGQPTIVKSEAAEHLWVTKHEIGEYLGDA 1031
            ++E  DW+  + ++Q + A +G  FP E+    ++ E   + + +L   P  LAPR T AD  NDRTTL+RAL ERL L+++ P     W LP +  E G         ++R   E T ++ +           +  + +   N P G  WR   E    ++G   ++GDKVF  R Q + G+  +V     E +WVT+ E+GEYL  A
Sbjct:    1 MKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGHAAELDRSDDDVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRNTHEATVRRFM----------GEKFEAYVPSNAPVGVHWRVPSEPSTGKTGGEQAYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 199
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: V4A4N9_LOTGI (MRP-L46 domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A4N9_LOTGI)

HSP 1 Score: 97.8 bits (242), Expect = 2.760e-19
Identity = 70/238 (29.41%), Postives = 112/238 (47.06%), Query Frame = 3 
Query:  402 WGIRSALLLERLPVIVEEYADWQRDFWDLQAQQ-------AHYGMKF----------------------PAEMGFEYSDEKPLTMEQILERSPVSLAPRRTPADESNDRTTLDRALDERLVLIVKPKPGAA--WRLPESAWEAGETIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQVQSGSFGDKVFINRVQLICGQPTIVKSEAAEHLWVTKHEIGEYL 1022
            W +  A+ LER P+I +E  D+++   D  ++        + + ++F                      P EM  E  D+    +E+       + APRRT ADE +DR + +R LDE+L+LIVK + G    W LP S W  GE++RQ A R              Q  D  +  F+GN P G F++    ++V + S G KVF  +     G   + + + +++LWVTK E+ +Y+
Sbjct:    1 WDLFGAVCLERRPIITKEMTDYEKKMSDFLSKLELENSLLSDHELRFRDDKLHAKRIKLEELTVEELENPREMAVEAEDKWKTELEEF------TFAPRRTVADEKDDRKSTERKLDEKLILIVKQRLGKTDVWALPHSQWLDGESMRQTANRALD----------SQCGDQIKSCFIGNAPCG-FFKYKYPKKVVNESIGRKVFFFKALYENGPVKLKEGDVSDYLWVTKSELSDYM 221
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: A0A2P6TJ63_CHLSO (Glycosyl group 1 family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TJ63_CHLSO)

HSP 1 Score: 103 bits (256), Expect = 4.020e-19
Identity = 78/216 (36.11%), Postives = 115/216 (53.24%), Query Frame = 3 
Query:  381 AASLGLDWGIRSALLLERLPVIVEEYADWQRDFWDLQAQ-QAHYGMKFPAEMGFEYSDEKPLTMEQILERSPVSLAPRRTPADESNDRTTLDRALDERLVLIVKPKPGAAWRLPESAWEAGETIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQVQSGSFGDKVFINRVQLICGQPTIVKSEA-AEHLWVTKHEIGEYL 1022
            AA+ G  +G   A +LERLPV+V E   W+++F++ QA  +A Y  + P E    ++D K   ++   + S    A R T AD +NDR +L R LD+RL ++VKPK G +W L +     GET+RQ AER     +  +A          Q +FVGN PAG         Q+  G+     F +R QLI G P +      +E++WV K E+G+Y+
Sbjct:   47 AAAAGKLYG---ACVLERLPVVVPESPAWEQEFFEWQASVRAKYMKQLPPE----FTDVKESEVQG--DASSYEPASRETEADRTNDRRSLQRRLDQRLFMLVKPK-GGSWALMQRENVEGETMRQTAERALADAVDTSAV---------QPYFVGNAPAG-------HVQLSDGT----TFFHRCQLIQGVPALQGGSGYSEYVWVAKDELGDYI 232
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: E1ZJP2_CHLVA (MRP-L46 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJP2_CHLVA)

HSP 1 Score: 97.8 bits (242), Expect = 4.120e-19
Identity = 76/218 (34.86%), Postives = 110/218 (50.46%), Query Frame = 3 
Query:  381 AASLGLDWGIRSALLLERLPVIVEEYADWQRDFWDLQAQQAHYGMKFPAEMGFEYSDEKPLTMEQILERSPVSLAPRRTPADESNDRTTLDRALDERLVLIVKPKPGA---AWRLPESAWEAGETIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQVQSGSFGDKVFINRVQLICGQPTIVKSEA-AEHLWVTKHEIGEYL 1022
            AAS G  +G+    +LERLPVI+ +  +W+++  + Q        K   +   E  D +    +      P   APR T AD++NDR +L R LD+RL ++V+PK G+   AW L +   + GET+RQ AER   + +          + V Q +FVGN PAG          V  G  G  +F +R QLI G P +      +EHLWV K E+ EY+
Sbjct:   50 AASGGKLFGV---CVLERLPVIIPDPPEWEQEHREWQQAITEKYFKVLPKDFVELKDSERQADDAGARYEP---APRITAADKANDRRSLQRRLDQRLFMLVRPKGGSGGGAWSLMQRENQEGETMRQTAERALAECV---------DESVVQPYFVGNAPAG---------HVALGEAGT-LFFHRCQLIQGVPVLRGGSGYSEHLWVAKDELPEYI 242
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: UPI001ABDC5A1 (39S ribosomal protein L46, mitochondrial isoform X1 n=4 Tax=Bufo TaxID=8383 RepID=UPI001ABDC5A1)

HSP 1 Score: 94.0 bits (232), Expect = 1.320e-17
Identity = 75/241 (31.12%), Postives = 115/241 (47.72%), Query Frame = 3 
Query:  387 SLGLDWGIRSALLLERLPVIVEEYADWQRDFWDLQAQ----QAHYG------MKFPAEMGFEYSD--------EKPLTMEQILERS------PVSLAPRRTPADESNDRTTLDRALDERLVLIVKPKPGAA--WRLPESAWEAGETIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQVQSGSFGDKVFINRVQLICGQPTIVKSEAAEHLWVTKHEIGEYLGDA 1031
            S G  W +  A+ L+R  V+ +  A  Q++  +L  Q    ++ Y       MK    +  + SD        E+ + M Q LE +       + LAPR T ADE NDRT+L+R L+  LVL+VK K G    W  P+  W AGET+RQ AER    +           D+  + HF+GN P G++     +        G KVF  +  L+ G+ ++   +  +++WV K E+ +YL  A
Sbjct:   36 SSGSPWRLHGAVCLKRPAVVSQSKAAIQQEVDELLQQIDLEKSFYSDHELQLMKDAERLRRKQSDLYDSDEEEEQDIVMAQDLEDTWEQKWKQMKLAPRVTEADEKNDRTSLNRKLENNLVLLVKEKIGNEDIWMFPQIEWVAGETMRQTAERALSDL----------SDNRVEAHFLGNAPCGFYKYKFPKTMRNEDIVGAKVFFFKA-LLKGKSSLTNQKKRDYVWVCKDELKDYLKPA 265
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: A0A6J0SLY8_9SAUR (39S ribosomal protein L46, mitochondrial n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SLY8_9SAUR)

HSP 1 Score: 92.8 bits (229), Expect = 3.260e-17
Identity = 76/246 (30.89%), Postives = 117/246 (47.56%), Query Frame = 3 
Query:  381 AASLGLDWGIRSALLLERLPVIVE----EYADWQRDFWDLQAQQAHYG------------MKFPAEMGFEYSDEK-PLTMEQILERS----------PVSLAPRRTPADESNDRTTLDRALDERLVLIVKPKPG--AAWRLPESAWEAGETIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQVQSGSFGDKVFINRVQLICGQPTIVKSEAAEHLWVTKHEIGEYLGDA 1031
            AAS    W +   L L+R P + +    E  +    F  L+ +++ Y             ++  AE G++  +E+  L  E +L R             S APR T AD++NDRT+L+R LD+ L+L+VK   G    W LP++ WEAGET+R+ AER         AT  G   +  Q  F+GN P G++     +     G  G KVF  +   + G    +  E  +++WV+K E+ +YL  A
Sbjct:   31 AASASSRWKLFGGLCLQRPPTVSQAPSPEEVEMAELFQQLEVEKSIYSTHEMTRLAENERLRRIAEKGYDEEEERGDLGKEVVLIRDLEDMWEQNFQQFSPAPRITDADKNNDRTSLNRKLDQNLLLLVKHNFGDQTVWLLPQTEWEAGETLRETAERGL-------ATLSG---NPLQAKFLGNAPCGFYKYKFPKALRAEGFLGGKVFFFKA-FLQGSHWPLAREKVDYVWVSKEELADYLTPA 265
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BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Match: UPI0006D92279 (39S ribosomal protein L46, mitochondrial n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0006D92279)

HSP 1 Score: 90.1 bits (222), Expect = 4.020e-17
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 3 
Query:  603 APRRTPADESNDRTTLDRALDERLVLIVKPKPG--AAWRLPESAWEAGETIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVGNCPAGWFWRTGDEEQVQSGSFGDKVFINRVQLICGQPTIVKSEAAEHLWVTKHEIGEYLGDAMGVYLKHV 1055
            A R T AD+ +DRT+L+R L ERLVL+VK K G    W LP+  W +GET+RQ AER      L TA+     D+  +  F GN P G +     ++     S G KV   + +L+ G  T  K++  +HLWV+K E+ EYL      YLK V
Sbjct:   41 AERITEADKKDDRTSLNRKLRERLVLLVKEKLGDEEVWLLPQVEWRSGETMRQTAERA-----LATAS-----DNGVEAVFFGNVPCGVYKYKYPKDMRTDSSQGAKVVFFKARLLAGDLTKSKAKG-QHLWVSKSELKEYLKPE---YLKQV 179
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7504.16402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Q3_ECTSI1.210e-16579.34Mitochondrial ribosomal protein L46 isoform 2 n=2 ... [more]
W7TRZ1_9STRA1.670e-2633.33Mitochondrial ribosomal protein l46 n=2 Tax=Nannoc... [more]
A0A2P6VD62_9CHLO6.580e-2038.24Serine threonine-kinase n=1 Tax=Micractinium condu... [more]
A0A4D9D2E5_9STRA2.270e-1932.06Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
V4A4N9_LOTGI2.760e-1929.41MRP-L46 domain-containing protein (Fragment) n=1 T... [more]
A0A2P6TJ63_CHLSO4.020e-1936.11Glycosyl group 1 family n=1 Tax=Chlorella sorokini... [more]
E1ZJP2_CHLVA4.120e-1934.86MRP-L46 domain-containing protein n=1 Tax=Chlorell... [more]
UPI001ABDC5A11.320e-1731.1239S ribosomal protein L46, mitochondrial isoform X... [more]
A0A6J0SLY8_9SAUR3.260e-1730.8939S ribosomal protein L46, mitochondrial n=1 Tax=P... [more]
UPI0006D922794.020e-1740.5239S ribosomal protein L46, mitochondrial n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7504contigL-elsbetiae_contig7504:1737..8146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score487.3
Seed ortholog evalue5.6e-135
Seed eggNOG ortholog2880.D7G8Q3
Preferred nameMRPL46
KEGG rclassRC02416
KEGG koko:K02519,ko:K05607,ko:K08860,ko:K17427
KEGG ReactionR02085
KEGG Pathwayko00280,ko01100,ko04137,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map00280,map01100,map04137,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG4548@1,KOG4548@2759
EC2.7.11.1,4.2.1.18
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko03012,ko03029
Ec32 ortholog description39S ribosomal protein L46, mitochondrial
Ec32 orthologEc-22_002600.1
Exons5
Model size1926
Cds size966
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.7373483-UTR-L-elsbetiae_contig7504:1736..26011622816834.7373483-UTR-L-elsbetiae_contig7504:1736..2601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7504 1737..2601 -
1691683849.034749-UTR-L-elsbetiae_contig7504:1736..26011691683849.034749-UTR-L-elsbetiae_contig7504:1736..2601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7504 1737..2601 -
1622816834.805286-UTR-L-elsbetiae_contig7504:8051..81461622816834.805286-UTR-L-elsbetiae_contig7504:8051..8146Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7504 8052..8146 -
1691683849.1107304-UTR-L-elsbetiae_contig7504:8051..81461691683849.1107304-UTR-L-elsbetiae_contig7504:8051..8146Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7504 8052..8146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.7501342-CDS-L-elsbetiae_contig7504:2601..27451622816834.7501342-CDS-L-elsbetiae_contig7504:2601..2745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 2602..2745 -
1691683849.0497732-CDS-L-elsbetiae_contig7504:2601..27451691683849.0497732-CDS-L-elsbetiae_contig7504:2601..2745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 2602..2745 -
1622816834.7611868-CDS-L-elsbetiae_contig7504:3237..34201622816834.7611868-CDS-L-elsbetiae_contig7504:3237..3420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 3238..3420 -
1691683849.060667-CDS-L-elsbetiae_contig7504:3237..34201691683849.060667-CDS-L-elsbetiae_contig7504:3237..3420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 3238..3420 -
1622816834.7713416-CDS-L-elsbetiae_contig7504:3681..38021622816834.7713416-CDS-L-elsbetiae_contig7504:3681..3802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 3682..3802 -
1691683849.0708628-CDS-L-elsbetiae_contig7504:3681..38021691683849.0708628-CDS-L-elsbetiae_contig7504:3681..3802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 3682..3802 -
1622816834.781043-CDS-L-elsbetiae_contig7504:4025..42171622816834.781043-CDS-L-elsbetiae_contig7504:4025..4217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 4026..4217 -
1691683849.0798187-CDS-L-elsbetiae_contig7504:4025..42171691683849.0798187-CDS-L-elsbetiae_contig7504:4025..4217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 4026..4217 -
1622816834.7910388-CDS-L-elsbetiae_contig7504:7725..80511622816834.7910388-CDS-L-elsbetiae_contig7504:7725..8051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 7726..8051 -
1691683849.0958257-CDS-L-elsbetiae_contig7504:7725..80511691683849.0958257-CDS-L-elsbetiae_contig7504:7725..8051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7504 7726..8051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7504.16402.1prot_L-elsbetiae_contig7504.16402.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7504 2602..8051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7504.16402.1

>prot_L-elsbetiae_contig7504.16402.1 ID=prot_L-elsbetiae_contig7504.16402.1|Name=mRNA_L-elsbetiae_contig7504.16402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=322bp
MKDCTDHMACGTFTMLGRCTMRSFSFARRTRLQPTSMIGRFCCRELSATS
QLPSKQQMDGFTVKDTRTPRPRVAKEKRKQYLAQRKASFEAEQNKAASLG
LDWGIRSALLLERLPVIVEEYADWQRDFWDLQAQQAHYGMKFPAEMGFEY
SDEKPLTMEQILERSPVSLAPRRTPADESNDRTTLDRALDERLVLIVKPK
PGAAWRLPESAWEAGETIRQAAERTAQQVLLKTATWKGQRDDVAQLHFVG
NCPAGWFWRTGDEEQVQSGSFGDKVFINRVQLICGQPTIVKSEAAEHLWV
TKHEIGEYLGDAMGVYLKHVI*
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mRNA from alignment at L-elsbetiae_contig7504:1737..8146-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7504.16402.1 ID=mRNA_L-elsbetiae_contig7504.16402.1|Name=mRNA_L-elsbetiae_contig7504.16402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6410bp|location=Sequence derived from alignment at L-elsbetiae_contig7504:1737..8146- (Laminarionema elsbetiae ELsaHSoW15)
TCAAGCGTCAGGTCCGGTCGGCCGGGGGCGCCGCAGACAACGTCACGAAG
ACACAAGTAGGGGGTCCAACTTTTCGGGGCCCCACGGAGCGCTGGATGAA
GGACTGCACGGATCACATGGCTTGTGGCACGTTCACCATGCTCGGGCGAT
GCACTATGCGTTCTTTCTCATTCGCACGGCGAACTAGGCTTCAACCGACG
TCCATGATCGGAAGATTTTGTTGTCGAGAACTGAGTGCTACCTCGCAACT
CCCCAGCAAGCAACAGATGGACGGCTTCACGGTCAAGGACACGCGAACGC
CGCGTCCTCGTGTGGCCAAGGAGAAACGAAAGCAGTACCTGGCTCAGCGG
AAAGCCTCATTTGAAGCAGAGCAGAACAAGGCGGCCAGTCTTGGCCTCGA
CTGGGGGATCAGGAGTGCCCTGTGAGTCGATAGCTGTCTGAACGATTGCG
TTACGCTGTACTTACTGGGCATGGACGACGCCACTCAATGCAATCTCGAC
CCGCGACATGCCGCTTAAGGTAGGCCACGATCAGTGGCCCGGTGGTGTCC
CCTAGTTTACTGCTGTACCATCCCGGATCAATTTTATTGTCTTGATTTTA
AACAACACGCTGTCAAATGCCTATGCCCGACAATTTTCAAAAAATGGTGC
ACCATCTCCTTGGCCGGTACATAGCTTTTGCATTCATATCGAAGGACATT
CAAAAGAGCAACATAGGCAGGGGGCAGACTTCAAATGGGTCCTTGTGCCT
CGAGTGGCTGTGTGCTTCAATACGTTTTTAGGACGTTTTGGGACTGCTGT
AAAAATGCGGTCTAACTCCGACCTTACCGCCTATCGCGTCGCACACCATG
ACTCTCATGCCCAACCAGAGGCTACGAGGAGACACAGGTGTACTCGAATA
TGTAGTATCTCAGAGCAACCCGTGGCGTCCTCAGCAGCGGTGGCAGCCCC
GTTTTGAAATGGCAGTGACGTTTGCCATGTCAAGAGCTTTTCAACAGTAG
CTTTAGACTTCGTACGAAGAACGGAGGACAGTAAAGGCCCTATACATAGC
ACCGCTAAAGAAACGAAGGCTACGCGATGGTGGCTGTTGTCACGTTGTCA
CTACATAGCTTTCGACAATACACTAGTTAGCGAATAATGAGCCGCACACA
ACCAACCCAACCCAACCAAACCAACCCTCGGACCGACGGCCCCAACCCAA
CCCAACCCAATCCAACCCAACCCAACCCACGGCCCCACGGCCCCAACCCA
GTCCACCCGCGGACCGCGGACCCACGGCCCCAACCCCACCCAACCAACTC
AACCCAACCCAACCCGCGGACCCATGCACCCACCACAACACAACCGGCAC
ACCGTTCGTGGCTCGAGGCCATTTACACGTGGCCACTTTGCCCCGGCAGG
AGTGCGAAATGCCACAGGATTCATCTTACCCAAGCCTCTTGGAGAGCATA
ATAGTGGCCACTTTTGAAATCTATGATGACCACAATACGCTGTGGTAGTG
CAGTTCCTCGTAGAGCCGACAGCAGCAGAGTGTTGACGTAGGAGGGATTT
TGAAGGACGCTTCCATACAGTATAGATGCATATATGCAAGCCCATATCAA
ACATAATCTAGTGTAGAGGCGGAACCGGTTGATGGTGCTGGTTATCGTCC
GGGTTCTTACCCGGTAAGATCATCTTTTTTTCGAAAAGAGGCTTATATTG
TGTAAATATTTTCAGTTGTATTCGGAACATCAACCCTGAGGTACTCCCTC
CCTCTTCACAGGGCACGAATCCTCTACAGGGCCCATATTTCCTGTGCCCT
GGCAGGGGTGCGAAAAGCTACAGGGTTCATGTGACCCCAACCCTCTGACT
GAGCAAAGTGGCCACGTGTGTTCCTCGCACGCACGCACGCACACACGCGG
CGCGTGTGTTTGGAATTTGTATCCTTCTGTGCTGTCAGTACCATATCACC
CCTGCATGACCAGTGAACCCGACCCATGCTACCCTTCCCCCGCCAGTGTT
TTCTTGCTCCTTCATCCTCCTAGCGTTGGTGCGCTGTGTTTGTTTACCTC
TCTCAGTTGCCTCAATACTTTGCCTCAATCTCGGCGGGCTTTGGCGGGAC
TGTCCATACATGATCTCTGGTTGGTATCTCTTCGTCGCGTGAACTCCCGG
GGATGGTTCGCTGCCATCCCGGGATCTCCGTAATAAATTTGGACAAACGA
CTGTGAAGCACGGCCATCTGTTGTCGGAGCACAGCTAAACAGGCGTGACG
AACATTCCCTAATTTATCTCCCCTCTCAGAAGGCAACAGATCGTTAATCG
GTGCTCTATAGACTTTGTTCTGGCCGAAAAGGAGGGTGTTTTTTGGCGGT
TGTATTTAAGTTTGGAGGGCGCTACACGCGATCGGATGGACTTTGGCCGA
TACTTGAAGCATTTTTTTTCTCTTCTCGGGGGGATGAAGGGAAAAAAAGG
TCGCGGCTTCGCCGCTTCGCGGCTCATTATTGGCCTACTGGGCCAAGAAG
AGTGTTCACCATTTTAACTTGGGATAGCGCTTAGTGTAATAGGGAAAATA
GACCCAAAAAACAGTTGCGCCGCTATCTAAACGCCATTTTTTCAAAGCTT
TACGGACCACCTACCAAATACGTCAGTTTTTGTCGGGTGCGGACCACAAA
ACACAACATGCCTCTTCGCCTTTTCTGGGGTTCGGCTTTTTCCCTTAGCC
ATGTGAGAAGAGGCAAAAACAAATTTGTGGGCGCCCGCGATATGGTTCGA
TGACGTATTTTTACGTTCCGTAGGGTAATGTTACGCTGCGTGCTGAATGA
CGTACGAAACCACCCCGAGACTACCTCGCAGGCACATCGGGAGCCAGGGG
AGGAGAGTTGGGGGGTGTGTGGAGTTGCCCAACAGCGAAAGTCTGCTGAT
GGGGGATGTCTACAGCACACGACACGCACAATCAATCCTTCCCTCTGATA
CAACAGCGGTAGTACATAGCAGTCTCGGCTGAGACTGCTCGGGGCCTATG
CGATGATGCTGATGAGCACACAACAAGCAAGAATAGCTGACATGCAACAT
TTCTATGGAGTGTGTGCGATATGTTTGCCGCGGTTTTGCGGCTACCCGAG
GCTGACGCCTGCTGTTAACTTTTTTTGCCGTCAGAAATTTTGCACCAACC
AGCCGTGATGCTACATCTGCGATCCTACAAAGAAAGGGCAACCACTCGTA
GGAAATGAACGCTTTCTCCTTCTCTGGTTACGACTACTGCTGCTGATGAG
ATACCGCTACTGAACCCTGCGCTATTTTGATGTATCTACAACAACGTGCA
TGTACAGCATGTACTCATGATCGACTCTGGTGGTGGGAGCAAAACAATAC
GCGTCCGCGGAGTGTTGCAAATGATTTAACCAAAAAAATAGACATACGAG
AGAGGGCACCAACAGCCATTCGTCGGCAGGGGTGCAAGGTTTGGTTGCTC
TGATTCGTTGGAAAAGGGGCGCATACATCGACACCTAGATACATGCAGCC
GTAATTCAAGGTTGTTGAATCAACATCATCAACAACAACGGTAACCCGCG
TAGAAGGAACGTACTACAACGGACGTTTCTCTCCCCCACAAATCCAGGCT
GCCAACAACATTGATCGTGCGCCTCCTTGGGCAACTACTGCAAGATACGG
CGTGTAAAATACAGCCGTTGCCATAAAGATATCGGCCTCCAAAGACATCA
AATTTTCCCTCTTTTCTTTTTTTTTTAGCCGATACCAAAAAATTGCCGCC
ACGTGATCCTGGCCTACCCTAATTGTTCCCCAAGACTCACCTGTTTTCCA
GTAGGCATGGAAATAAACACTGTTGTGTGATGCCCCCCACACTTGTATAG
TGCTTTGGATGTACCCCGGTTGCTCGTCTTTGTGAAACCGCCGGTTGTGC
TGGTTCCTTGTCTGGCTCCTTTTCCACAGGCTTTTGGAGCGTCTCCCGGT
GATTGTGGAGGAATACGCTGACTGGCAGCGTGATTTTTGGGATCTGCAAG
CGCAGCAAGCTCACTATGGCATGAAATTCCCTGCCGAGATGGGCTTCGAG
TACAGTGACGAGAAGCCGCTAACGATGGAGCAGATTCTAGAGCGAAGCCC
TGTCTCTCTCGCTCCGAGGCGGTAAGCGTGGGTCATCAGAGCATGAGCGC
GACACCTCTGGCTGCTGTGCTCGAATGATACCCTGTCATTTCTCTTTATT
GAACCTGTGTGCAAGGTTGGTGTTTTGCACATGAGTTCTCTAGACCTACC
TACTAAGCGGCCAACCTGTGGCTGGCTCTTCCCGAACAAGTTCAAATTTT
GGATCATTTTTTCGTGTTTTGGACGGCGTTTGTTCCTCTCGCAGCACACC
GGCAGACGAGTCAAATGACCGTACGACTTTAGACCGGGCACTCGACGAGA
GACTAGTGCTGATTGTGAAGCCTAAACCAGGAGCGGCGTGGCGTCTTCCC
GAGAGTGCTTGGGAGGTGAGAGCCAAACCTTCTTCAGAGAGCCGTTTGGA
AAGGGATATATGCATACATACAAGCAGCTAGCTCCTTACAAATTGGGAAC
TAATTGTGTTTTTTGGCATTGCGTAGATGAGTGTCTGGGTTTTCTGGAAG
CGCTCAAGCACCTAGTTTTGTACCCGGTAGTTGTGTGAAATTCGCACGCC
GTGCTGTCAATGCATCCTAGTAGTACCAGGTGAAAAGGATGGTTGGCTCC
TCACACGCTCTATTTCATGCTGACAGGCTGGAGAGACTATCCGCCAAGCA
GCAGAGCGAACTGCGCAACAGGTGCTCCTCAAGACTGCCACTTGGAAGGG
TCAGCGGGACGACGTAGCTCAGCTCCATTTTGTTGGAAATTGTCCTGCCG
GCTGGTTTTGGCGCACAGGAGACGAAGAACAAGTCCAAAGCGGGAGCTTC
GGGGACAAGGTATATACAAACAGTTGAAATATACCTCTCCGCAAAACTGT
CCAATACAGACCTTGTCGCCCGCTCTTCGAAAGTGCTGATTTCCGGGGGC
GATCATGGTTAAGGTCTACTTATGTATCAGTTAGTAACACCTTGTGTCCA
CCCTTCATATAAACGTTCTGGCCGAACAATCTGAATGGACACCGCTCCAT
CCTGCATAGATATCCCCTATATTTTCACCAAGACCTTTCTTTGTGGTGTG
AAACCAGGGGCTTCGAGTTTTGGGAGGACGTTGTTAAAGAACTTTGCTAC
GAATAGCCCTCTCCTATTTATGTATTGCGTAAGGCCCTTGTGCCTCAGGG
ATGTTTTTTGGAAACGAAGTTGTGCCTGATGTATCTACAATAATTGGCTC
ATTTTTTCGAAGTATTAGACATTGTTTTGAATGAAGAGCGCAGGAAGGAG
CGGCACCAGCATAAATTTAGATGTCATTCCTACTGTTTGGTTATTATGCA
GGTGTTCATCAACCGGGTACAACTCATTTGTGGGCAACCAACGATCGTCA
AGAGTGAAGCAGCTGAACATCTGTGGGTGACCAAGCATGAGATTGGGGAG
TACCTCGGGGACGCCATGGGGGTCTATTTGAAACACGTCATCTAAAGCAC
TTGATCTAAACGCACATGAGCTGTTGATCGTCTAAGCGAGGTGCAAAGAA
ATGGGATTGTGGCGTCTTGGCCCGGTTGAGAGCCCGATCGCGTACTCTTG
GCCGAGTCACTGGGGTTCAGCCTGATGTTGAGTGCACGCCCCGCTGAGCC
TGCATGTCAAACACGGCTTGGATCTGTGTCGGCCGTGGTTCCAATCATCT
TGGAGAACCAGGAGGCTGACGTGCTGTGCGTGTTATTTGTTTCTCCATCT
TCTGGGAATTTTGTACTAATGAATTATCCTACATAGGAAGCACCTATTAC
ATGTGTTGTAAGTAGGTACCAGCGAGAGATGTTCCACTGTGGGAAATAAC
CACATAAACCTGTCGAAGCAATTCAAACGTTTTAACACGGGCTTTTTTAC
ATACCCCCTCCCACCTAGTTTGGTCGGTGACCTGGGAAATCCGTTTTTTT
GTTGTTTACGGCACTCTGTAGAGGAAAACAAAGCGGTGAAAACGGGTCTG
CTGGGCATCTAAGAGTGGACAGCACAGGAATGGGATGATGAAGCACCGCG
AGTGGCTCCTCTGCGGTTAAGATCTTGGCAAGTTGTCATTAACGTATCTG
AGGCGTGAGCGGCGAGCGGCCAGCTGTGATGAACAGAAACACACGTACGA
CCATCTGTGACTGTTTTTGTTTTCACACATGTTGGGATCCTTCACAAACA
GCTTGGGCGATGAAGCACCGCGAATGGCTCCTCTGCGGTTCAGATCTTGG
CAAGTTGTCATTAACGTATCTGAGGTGTGAGCGGCGAGCGGCCAGCTGTG
ATGAACAGAAACACACGTACGACCATCTGTGACTGTTTTTGTTTTCACAC
ATGTTGGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7504:1737..8146-

>mRNA_L-elsbetiae_contig7504.16402.1 ID=mRNA_L-elsbetiae_contig7504.16402.1|Name=mRNA_L-elsbetiae_contig7504.16402.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1932bp|location=Sequence derived from alignment at L-elsbetiae_contig7504:1737..8146- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGACTGCACGGATCACATGGCTTGTGGCACGTTCACCATGCTCGG
GCGATGCACTATGCGTTCTTTCTCATTCGCACGGCGAACTAGGCTTCAAC
CGACGTCCATGATCGGAAGATTTTGTTGTCGAGAACTGAGTGCTACCTCG
CAACTCCCCAGCAAGCAACAGATGGACGGCTTCACGGTCAAGGACACGCG
AACGCCGCGTCCTCGTGTGGCCAAGGAGAAACGAAAGCAGTACCTGGCTC
AGCGGAAAGCCTCATTTGAAGCAGAGCAGAACAAGGCGGCCAGTCTTGGC
CTCGACTGGGGGATCAGGAGTGCCCTATGAAGGACTGCACGGATCACATG
GCTTGTGGCACGTTCACCATGCTCGGGCGATGCACTATGCGTTCTTTCTC
ATTCGCACGGCGAACTAGGCTTCAACCGACGTCCATGATCGGAAGATTTT
GTTGTCGAGAACTGAGTGCTACCTCGCAACTCCCCAGCAAGCAACAGATG
GACGGCTTCACGGTCAAGGACACGCGAACGCCGCGTCCTCGTGTGGCCAA
GGAGAAACGAAAGCAGTACCTGGCTCAGCGGAAAGCCTCATTTGAAGCAG
AGCAGAACAAGGCGGCCAGTCTTGGCCTCGACTGGGGGATCAGGAGTGCC
CTGCTTTTGGAGCGTCTCCCGGTGATTGTGGAGGAATACGCTGACTGGCA
GCGTGATTTTTGGGATCTGCAAGCGCAGCAAGCTCACTATGGCATGAAAT
TCCCTGCCGAGATGGGCTTCGAGTACAGTGACGAGAAGCCGCTAACGATG
GAGCAGATTCTAGAGCGAAGCCCTGTCTCTCTCGCTCCGAGGCGGCTTTT
GGAGCGTCTCCCGGTGATTGTGGAGGAATACGCTGACTGGCAGCGTGATT
TTTGGGATCTGCAAGCGCAGCAAGCTCACTATGGCATGAAATTCCCTGCC
GAGATGGGCTTCGAGTACAGTGACGAGAAGCCGCTAACGATGGAGCAGAT
TCTAGAGCGAAGCCCTGTCTCTCTCGCTCCGAGGCGCACACCGGCAGACG
AGTCAAATGACCGTACGACTTTAGACCGGGCACTCGACGAGAGACTAGTG
CTGATTGTGAAGCCTAAACCAGGAGCGGCGTGGCGTCTTCCCGAGAGTGC
TTGGGAGCACACCGGCAGACGAGTCAAATGACCGTACGACTTTAGACCGG
GCACTCGACGAGAGACTAGTGCTGATTGTGAAGCCTAAACCAGGAGCGGC
GTGGCGTCTTCCCGAGAGTGCTTGGGAGGCTGGAGAGACTATCCGCCAAG
CAGCAGAGCGAACTGCGCAACAGGTGCTCCTCAAGACTGCCACTTGGAAG
GGTCAGCGGGACGACGTAGCTCAGCTCCATTTTGTTGGAAATTGTCCTGC
CGGCTGGTTTTGGCGCACAGGAGACGAAGAACAAGTCCAAAGCGGGAGCT
TCGGGGACAAGGCTGGAGAGACTATCCGCCAAGCAGCAGAGCGAACTGCG
CAACAGGTGCTCCTCAAGACTGCCACTTGGAAGGGTCAGCGGGACGACGT
AGCTCAGCTCCATTTTGTTGGAAATTGTCCTGCCGGCTGGTTTTGGCGCA
CAGGAGACGAAGAACAAGTCCAAAGCGGGAGCTTCGGGGACAAGGTGTTC
ATCAACCGGGTACAACTCATTTGTGGGCAACCAACGATCGTCAAGAGTGA
AGCAGCTGAACATCTGTGGGTGACCAAGCATGAGATTGGGGAGTACCTCG
GGGACGCCATGGGGGTCTATTTGAAACACGTCATCTAAGTGTTCATCAAC
CGGGTACAACTCATTTGTGGGCAACCAACGATCGTCAAGAGTGAAGCAGC
TGAACATCTGTGGGTGACCAAGCATGAGATTGGGGAGTACCTCGGGGACG
CCATGGGGGTCTATTTGAAACACGTCATCTAA
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