mRNA_L-elsbetiae_contig7503.16400.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7503.16400.1
Unique NamemRNA_L-elsbetiae_contig7503.16400.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7503.16400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7503contigL-elsbetiae_contig7503:1692..2167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size476
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.5217783-UTR-L-elsbetiae_contig7503:1691..18641622816834.5217783-UTR-L-elsbetiae_contig7503:1691..1864Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7503 1692..1864 +
1691683848.8688302-UTR-L-elsbetiae_contig7503:1691..18641691683848.8688302-UTR-L-elsbetiae_contig7503:1691..1864Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7503 1692..1864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816834.5337675-CDS-L-elsbetiae_contig7503:1864..21671622816834.5337675-CDS-L-elsbetiae_contig7503:1864..2167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7503 1865..2167 +
1691683848.8796089-CDS-L-elsbetiae_contig7503:1864..21671691683848.8796089-CDS-L-elsbetiae_contig7503:1864..2167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7503 1865..2167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7503.16400.1prot_L-elsbetiae_contig7503.16400.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7503 1865..2167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7503.16400.1

>prot_L-elsbetiae_contig7503.16400.1 ID=prot_L-elsbetiae_contig7503.16400.1|Name=mRNA_L-elsbetiae_contig7503.16400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MFCVGWVDGTGEACRGCDMMTGMASAQGLIFGVVNAQVQHSLFSTAHHTL
LCGIGVVLRLEAVRAGAVTQPRQIYRWGVCLATRSSPPKRHTAVTEEQGG
*
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mRNA from alignment at L-elsbetiae_contig7503:1692..2167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7503.16400.1 ID=mRNA_L-elsbetiae_contig7503.16400.1|Name=mRNA_L-elsbetiae_contig7503.16400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=476bp|location=Sequence derived from alignment at L-elsbetiae_contig7503:1692..2167+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCTCGGGGCGCGGGACAACACGAAATTTGAACCGAATCTCTGGGCCAA
CAGAGAAGAGAGCCGTTGTGTATGATGCAAATGCAGAAAAGTAAGTTGTC
TGCAAAGCTTGATGACGTTCGCGTTGGCTTTGATGGCTAGACTCCGACCG
ACTTGAACCTCACAACTGGCCGGATGTTTTGTGTTGGGTGGGTTGATGGC
ACAGGAGAGGCCTGCAGAGGGTGTGACATGATGACGGGGATGGCGTCTGC
TCAGGGATTGATATTTGGAGTGGTGAACGCGCAGGTGCAGCATTCCCTTT
TCTCCACAGCCCACCACACTCTTCTGTGTGGCATAGGCGTGGTCCTCCGC
TTAGAAGCAGTACGAGCGGGCGCAGTAACGCAACCACGACAAATCTACCG
GTGGGGTGTCTGTCTAGCCACTCGCAGTTCACCGCCAAAAAGACACACAG
CAGTTACAGAAGAGCAGGGGGGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7503:1692..2167+

>mRNA_L-elsbetiae_contig7503.16400.1 ID=mRNA_L-elsbetiae_contig7503.16400.1|Name=mRNA_L-elsbetiae_contig7503.16400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig7503:1692..2167+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTGTGTTGGGTGGGTTGATGGCACAGGAGAGGCCTGCAGAGGGTG
TGACATGATGACGGGGATGGCGTCTGCTCAGGGATTGATATTTGGAGTGG
TGAACGCGCAGGTGCAGCATTCCCTTTTCTCCACAGCCCACCACACTCTT
CTGTGTGGCATAGGCGTGGTCCTCCGCTTAGAAGCAGTACGAGCGGGCGC
AGTAACGCAACCACGACAAATCTACCGGTGGGGTGTCTGTCTAGCCACTC
GCAGTTCACCGCCAAAAAGACACACAGCAGTTACAGAAGAGCAGGGGGGA
TAGATGTTTTGTGTTGGGTGGGTTGATGGCACAGGAGAGGCCTGCAGAGG
GTGTGACATGATGACGGGGATGGCGTCTGCTCAGGGATTGATATTTGGAG
TGGTGAACGCGCAGGTGCAGCATTCCCTTTTCTCCACAGCCCACCACACT
CTTCTGTGTGGCATAGGCGTGGTCCTCCGCTTAGAAGCAGTACGAGCGGG
CGCAGTAACGCAACCACGACAAATCTACCGGTGGGGTGTCTGTCTAGCCA
CTCGCAGTTCACCGCCAAAAAGACACACAGCAGTTACAGAAGAGCAGGGG
GGATAG
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