mRNA_L-elsbetiae_contig75.16393.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig75.16393.1
Unique NamemRNA_L-elsbetiae_contig75.16393.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 2.060e-120
Identity = 177/218 (81.19%), Postives = 191/218 (87.61%), Query Frame = 1 
Query:   40 FVNPSAALSRAVGAP--STRRTSSACPLRMAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGILEHVISRV 687
             +  SAA    + AP  S  R +++   +M   +DY ASLPGAPFGMAAEGKYFDPAGLA  QD ETIKKWREAELKHGRVSMLAA+GILVSEVFHP FMGPAYIGPAVEHAQQIATVYPLFWV S+G+IAFIEGQTIKDAWGTVSPVTGVGNLK EYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQE VDG+GILEH++SR+
Sbjct:   14 LIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 3.190e-63
Identity = 113/210 (53.81%), Postives = 145/210 (69.05%), Query Frame = 1 
Query:   37 AFVNPSAALSRAVGAPSTRRTSSACPLRMAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 666
            AFV P A  S A         SS+  L+M+  +DY A+LPGAPFG   +GK FDP  L+   D   IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  YP FWV S+  +AFIE  TI  A+ T S VTG G LKE+Y PGDLGFDPL L P+D     +++++EL+ GR AMIG+ GM+VQE ++   IL
Sbjct:   20 AFVAPMAVRSAAPA-------SSSSALKMSAGSDYVATLPGAPFG---DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 2.840e-61
Identity = 111/210 (52.86%), Postives = 141/210 (67.14%), Query Frame = 1 
Query:   37 AFVNPSAALSRAVGAPSTRRTSSACPLRMAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 666
            AFV P A  S A         SSA  L+M+  +DY A+LPGAPFG   +GK FDP  L+   +   IK WREAE+KHGRV+MLA +G++V+E +HP FMGP YIGPAV+H Q+I+  +P FW  S+  +AFIE  TI  A+   SPVTG G L++EY PGDLGFDPL L PKD      +Q++EL+ GR AMIG+ GM+VQE V+   IL
Sbjct:   21 AFVAPMAVRSAAPA-------SSASALKMSAGSDYVATLPGAPFG---DGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 2.840e-60
Identity = 111/210 (52.86%), Postives = 138/210 (65.71%), Query Frame = 1 
Query:   37 AFVNPSAALSRAVGAPSTRRTSSACPLRMAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 666
            AFV P A  S A         SSA  L+M+   DY A+LPG      A GK FD   LA   D   IK WREAE+KHGRV+MLA +G++V+E +HPFFMGP YIGPAV+H Q+I   +P FW  S+  +AFIE  TIK A+   SPVTG G L++EY PGDLGFDP  + PKD      +Q++EL+ GR AMIG++GM+VQE V+GQ IL
Sbjct:   21 AFVTPMAVRSAAPA-------SSASALKMSAGTDYLATLPG------ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 5.760e-59
Identity = 99/188 (52.66%), Postives = 139/188 (73.94%), Query Frame = 1 
Query:   85 STRRTSSACPLRMAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECV 648
            S R TS+A   RM+  +DY ++LPGAPF   A+GK +DP GL+++ D E IKKWREAE+KHGRV+MLA++G+LV+E FHP F+GP YIGPA+ H ++I   +P FW  ++  IA++E + I   +  + PVTG G ++ +Y PGDLGFDPLGLAP+D  +  +++++EL+ GR AMIG+ GMIVQE V
Sbjct:   82 SARPTSTAA--RMSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.080e-58
Identity = 106/212 (50.00%), Postives = 140/212 (66.04%), Query Frame = 1 
Query:   37 AFVNPSAALSRAVGAPSTRRTSSACPLRMAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGILEH 672
            A +  S A    V   S    S+A  L+M+  +DY A+LPGAPF   ++GK FDP  L+       IKKWREAE+KHGRV+MLA++GILV+E +HP FMG  +IGPA+ H Q+I+  +P FW  S+  +AFIE  TI  A+ T S VTG G LKE+Y PGDLGFDPL L P       +++++EL+ GR AMIG+ GM+ QE V+GQ IL +
Sbjct:   13 ALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPF---SDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPN 221
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.260e-51
Identity = 88/163 (53.99%), Postives = 114/163 (69.94%), Query Frame = 1 
Query:  187 KYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGILEHV 675
            K FDP GLA   +   IK WREAE+KHGRV+MLA++G+LV+E +HPFFMGP YIGPAV+H Q+I+  +P FW  S+  +A IE  TI  A+   S VTG G L++EY PGDLGFDPL L P D      +Q++EL+ GR AMIG+ G +VQE V+   IL+ +
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFL 177
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.580e-51
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = 1 
Query:  193 FDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 666
            FDP GL+       IKKWREAE+KHGRV+MLA++G++V+E +HPFFMGP YIGPAV+H Q+I+  +P FW  S+  +AF+E  TI  A+ T S VTG G LKE+Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE V+   IL
Sbjct:   38 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.640e-49
Identity = 88/158 (55.70%), Postives = 114/158 (72.15%), Query Frame = 1 
Query:  193 FDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQGIL 666
            FDP GL+       IKKWREAE+KHGRV+MLA++G++V+E +HPFFMGP YIGPAV+H Q+I+  +P FW  S+  +AFIE  TI  A+ T S VTG G LKE+Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE V+   IL
Sbjct:  234 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
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BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA)

HSP 1 Score: 170 bits (430), Expect = 9.840e-47
Identity = 91/189 (48.15%), Postives = 117/189 (61.90%), Query Frame = 1 
Query:  106 ACPLRMAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHGRVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGLIAFIEGQTIKDAWGTVSPVTG----VGNLKEEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQECVDGQG 660
            A P    + N   +S+PG+          FDP GL+   D+ T+KK++EAELKHGR++MLAA+GILV E FHP F G A  GPA+   QQ+  VYPLFWV     +AF+EG TI   W ++         V  LKE+Y PGD+GFDPLGL PKD   F  ++++EL+  R AMIGV GM+ QE V G G
Sbjct:   21 ASPRTSLKLNADLSSIPGSSSPFPG----FDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF-GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLGPG 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig75.16393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQG7_ECTSI2.060e-12081.19Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI3.190e-6353.81Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI2.840e-6152.86Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI2.840e-6052.86Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI5.760e-5952.66Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI2.080e-5850.00Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI1.260e-5153.99Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI1.580e-5155.06Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE2.640e-4955.70LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7R9U0X8_9STRA9.840e-4748.15Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig75contigL-elsbetiae_contig75:33545..38200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.8
Seed ortholog evalue3e-96
Seed eggNOG ortholog2880.D7FQG7
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-01_006160.1
Exons5
Model size1385
Cds size570
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.8192728-UTR-L-elsbetiae_contig75:33544..336021622816833.8192728-UTR-L-elsbetiae_contig75:33544..33602Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig75 33545..33602 +
1691683848.35296-UTR-L-elsbetiae_contig75:33544..336021691683848.35296-UTR-L-elsbetiae_contig75:33544..33602Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig75 33545..33602 +
1622816833.8303256-UTR-L-elsbetiae_contig75:34282..343441622816833.8303256-UTR-L-elsbetiae_contig75:34282..34344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig75 34283..34344 +
1691683848.364376-UTR-L-elsbetiae_contig75:34282..343441691683848.364376-UTR-L-elsbetiae_contig75:34282..34344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig75 34283..34344 +
1622816833.8864174-UTR-L-elsbetiae_contig75:37505..382001622816833.8864174-UTR-L-elsbetiae_contig75:37505..38200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig75 37506..38200 +
1691683848.4172475-UTR-L-elsbetiae_contig75:37505..382001691683848.4172475-UTR-L-elsbetiae_contig75:37505..38200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig75 37506..38200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.8427413-CDS-L-elsbetiae_contig75:34344..345361622816833.8427413-CDS-L-elsbetiae_contig75:34344..34536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig75 34345..34536 +
1691683848.3736556-CDS-L-elsbetiae_contig75:34344..345361691683848.3736556-CDS-L-elsbetiae_contig75:34344..34536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig75 34345..34536 +
1622816833.8549755-CDS-L-elsbetiae_contig75:35365..354251622816833.8549755-CDS-L-elsbetiae_contig75:35365..35425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig75 35366..35425 +
1691683848.3827522-CDS-L-elsbetiae_contig75:35365..354251691683848.3827522-CDS-L-elsbetiae_contig75:35365..35425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig75 35366..35425 +
1622816833.8646612-CDS-L-elsbetiae_contig75:36937..371031622816833.8646612-CDS-L-elsbetiae_contig75:36937..37103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig75 36938..37103 +
1691683848.396489-CDS-L-elsbetiae_contig75:36937..371031691683848.396489-CDS-L-elsbetiae_contig75:36937..37103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig75 36938..37103 +
1622816833.8743453-CDS-L-elsbetiae_contig75:37353..375051622816833.8743453-CDS-L-elsbetiae_contig75:37353..37505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig75 37354..37505 +
1691683848.4082572-CDS-L-elsbetiae_contig75:37353..375051691683848.4082572-CDS-L-elsbetiae_contig75:37353..37505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig75 37354..37505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig75.16393.1prot_L-elsbetiae_contig75.16393.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig75 34345..37505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig75.16393.1

>prot_L-elsbetiae_contig75.16393.1 ID=prot_L-elsbetiae_contig75.16393.1|Name=mRNA_L-elsbetiae_contig75.16393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MAQQNDYCASLPGAPFGMAAEGKYFDPAGLAAKQDNETIKKWREAELKHG
RVSMLAAMGILVSEVFHPFFMGPAYIGPAVEHAQQIATVYPLFWVGSVGL
IAFIEGQTIKDAWGTVSPVTGVGNLKEEYYPGDLGFDPLGLAPKDGEDFR
LIQSQELDLGRYAMIGVLGMIVQECVDGQGILEHVISRV*
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mRNA from alignment at L-elsbetiae_contig75:33545..38200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig75.16393.1 ID=mRNA_L-elsbetiae_contig75.16393.1|Name=mRNA_L-elsbetiae_contig75.16393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4656bp|location=Sequence derived from alignment at L-elsbetiae_contig75:33545..38200+ (Laminarionema elsbetiae ELsaHSoW15)
GTAGCTGTCCTTGGTCTGAGCACCGCAGAGGTCAAGGCCTTCGTCAATCC
GAGTGCAGGTATGATGGTGTCGATCCAAACGCCGAACAAACACGCTTCTG
TCTTATTGTTCCTGTGAACCAGCAAATTATCTCACTCTGATCGGCATTCC
CCTGCTCCACTCTGTGGGCTAGAGAACAAGAAGTCTTTTTTCGTGTAGCG
TTCAGGATCGTCGAGCGCGCGGCTTAGACTAGTCTATCTACATAGACTAG
ATACATATCATATGTTGTGGATTTTCCGTGGTCTCTGGCTCTCTCGTCTG
TTCGTCAACCATCAATCGACAAGCAGTGACGAAACGCCAGTGGACAGCAC
AATGTAGCAGTTATCTCGTTCCGCCACATCGTTTAAAGGTCCCACAGATG
TTCCGGTGGCATGATAACCTGTCTCTTCCGTGGTCGTATGTAACGGTGGT
CACGTATCTAACCATAGATAGATACCTCGTACCTCGTACATACTACTGTC
AAGTATTTCAGTACCCACGCGGTGTCAGCACCATGAGACCTTTTCTCGCT
CGCTCAAAAGTTGATGAGCTGCAGACATCAACACCCTGTCCCCCGTCTCC
CTAACTGGTTGCATGTGTTGTTTGTCTACCAATAGACAAAGAAAGCTCGC
GTACATTGTCGTGAGATTTCAGACGTTTTCACCTCTAATCTGTCTCCATT
TTCGCCGCCCTATGCATCACTACGGTAAACAAAAACAGCGCTTTCGCGAG
CGGTCGGTGCCCCTTCCACGCGACGAACTTCCTCTGCCTGCCCCCTGCGC
ATGGCGCAACAAAACGACTACTGCGCTTCCCTTCCGGGTGCCCCCTTCGG
CATGGCTGCGGAGGGAAAGTACTTTGACCCTGCGGGACTGGCTGCGAAGC
AGGACAACGAGACCATCAAAAAGTGGCGCGAGGCCGAACTCAAGCACGGA
CGCGTCAGCATGTTGGCGGCGATGGGCATCCTCGTGTCCGAGGTATGTGT
GTACATATGTTTGCATATGTATGTGACCGGCTAGCGTGCATTTTGCACAG
CCAAATGGAGGAGCACCTGAAACGGCCGTCTGCTACATATTGTAGTATCT
GTTGTCGGTCCATATATTGCGAAGGGTGTTGCCGCTCCCCGCTGCGGTTT
CGGCTGAAGATAGTTGAGCAGTACAGTGGCTACTGTACGCTGTAGCTGGC
GTATGTGGCTGAGGCTTGGGTAGAGAAACACAGAGTGATTTATTATCCAC
AGAAATACGCCCAAGCTGTCTTCACCTGGCGGTTAAAGACTTGGAACACG
CCTTTACAATACTGTATCAAACTCACACAGTAGAATAGAGTCGTTCTTGT
ACTACAAATACCCAACAAAGATTAATATTGTAGATAACATGCAATGGACC
AGACAGTTTCCTGGGTGAGTTGCTTCTCTCTCAAGCTTTTTCGGTCATTT
TGATATTTTGTCTCTCAACTGCGGCACTCCCTTTTCGAAGGTTCGGCACA
AGCAGTGTGTTTTGTCGAGCTCTCGCTGCACCCTCCTTGGGAGGGATGGA
GAGTCTTGACTAGCGGAAAGTCCACGGTACTCCCCCCCCCCCCGTCGAAA
CCACTCTTACTTACCCACGCTTGTCAAGTCTCGCGTTTTACTAAACTCTT
CACGTCCCAAGGCGCAGCTGCAAGAACGGAAATGGCCTGCTCTACGATAC
GTTAAAAGTGTCGTATCCGTCACTGCGCGGGACTTAATCTTCGGGGGTTG
ACGACGGCATCTACTGCTGTACTGACCCCGTCTTTCCTCTTCCGTTTTCC
TATCGACACAACCCGCTCCAGGTGTTCCACCCCTTCTTCATGGGCCCCGC
TTACATCGGCCCGGCTGTAGAGCACGCACAGGTTCGTTGGTACTTACCCA
CCGGCAACTTGAATTAGCCTTGCTTCTGGCTTTTCTTCTTTCTTCCGTTG
AGGGGTGCCGTGCCTCGTGTTCTCTCTCTCTGTTGTTGCGGCCTGAAGTA
GGTGGCGTGTTTTCCTCCTTTGAGGTACTTTGCGCCTGATGCAGGCACCT
TCTTCCATATCCATTGTTTTCTACGCGAAAACTGGTTGAAGGAAGTATCG
TGCCCCAAGTGAGGTTTGCCTCTTTTTTCTGGACGCGCCTGGTTGGAGGA
CGTGTTGCACGGTATCACAAGAGAATGACATGGCATTCATGAACAACGTA
GAAACGAGTTGAGTGCCTCTCGGGTGTGTTGGGCAGTGTGATCTTCTTTG
TGCGACTGCGGTCCAGGTTGCGTGTGCGGCCTTGTAGACACCGAATTTGA
AACCGCGCGAACAAGGCGCATCGTGTTTCCTGGCTCACTTGATTATTCTT
GGGCGCCTTCCGCGGTTGACCGTCACGGATTTTTTTAAACAGGGATCATG
AACGAACTATCAGCAGCTAAGCTCTGAAAAGTTGCACACACTTTAGACAA
GGCACGTGGATTACGATAATATATGTTTTTTTTATTTTGCCATTCTGGTG
GCGAGTTATCCACGATCAAGTGGCAAAATATCGTAAAAATCAACTCTGTG
GGGCCCCCGAGAAAATTTCAACGCCCTCCGAATCGCATGAATTTTTCAGG
GATGAAGGATGTAGCATTGCCGAACACGTTTCCGAAGTTATAATCGAAAT
TCAAACATTTTTGAGCTACCCATGTCCCTTCAAAGTTTATGCAAGAAAGC
GGGGAAAACTTTGGATGAGTACTAAAGCTAGTATAAAATATCCCCCCCGG
GCATACGTTCCACATGCTTATGTAAGCTCCTCAGACTTCATTCTAGGCTA
ATTTTGGGTAAGGTGTCACGAATATTCAATCAGAATGACCCAGTTCGACG
TCGTGTTTGAGGATCAGGCTTGCCAAATTGGCTTTTTCATGAAGGATTCT
CAAAATTTGAGCTTTCTTGATATCCTTCTCCCACATCGAGTTTTAGTCTG
AGCAACATTCTGAGTAGCTCTACCCCCTCTAAATCGGCCAAGCGGAATCT
ATTGAGACCAAGTCCGAAGAAAATAAAGATCGGGAATGCGATGAAAAAAA
ATGTTCGAGGCGAAGATGAACTTTTTTTTAAACCCCATTTTTGGGCATTT
TAGAACGATGTACGAAGTCAATTTTTTTTTTTGGCTTTGGGAAAAGCCAA
AACGCCCAACCGCGGAAGGCGCCCTTGGCGAGTGCAAATCCCGTCAACCC
GTTGGTATTGCGGTGCGAAGAACATCTCGCCACTTATGTGTTGGCTCTAT
TTCGGTTTCAGTGTAAGTCTATGCTCTACTAACGCATAACGGAGCAAGTT
TTGGACAGCGCTTTCGAAAATATGCCTCATGCGTGCCCGTGCCTTAACGC
CATTTGTCCTCTGCCCTCCCTCGCCATTATCTCCGCCCTTCAGCAAATCG
CGACGGTGTACCCCCTGTTCTGGGTAGGCTCGGTAGGCCTCATCGCCTTC
ATCGAGGGTCAGACTATCAAGGATGCTTGGGGAACCGTTTCGCCAGTCAC
CGGTGTCGGGAACCTGAAGGAGGAGTACTACCCTGGAGACCTTGGATTCG
ACCCGCTCGGTGAGAAATTGTGCCGTGGACACGTGGGATGCGTGGTGTGT
GGTACGCTAGATACAACCTACACGCCCGCGCGCCGCCGGGCACGGCCATC
TCGGGCGCTGCTGCAATTGCCACGTTTAGCGGATGTTTTCGCATTGTATT
TTGAAGGTGGAAGACATTTGTATCAATCTAGCCCTCTGATTTTTTTGTTT
TCGTGGTGTGTGTGTTGTGCTCTCCCTCTTCTCGTATTGTCTTCTGCTGC
CCAATTCAGGCCTGGCACCCAAGGACGGGGAGGACTTCCGCTTGATCCAG
TCGCAGGAGCTCGACCTCGGGCGGTATGCGATGATCGGCGTTCTTGGAAT
GATCGTGCAAGAGTGCGTTGACGGGCAAGGCATTTTGGAGCACGTCATCT
CGCGGGTCTAGTTTTCAGTTCGGACGTGAGGAATAGTCGCGAGATGCACC
CTTCGAGCGGGGCGAGCGAACCTCTCGGGGCAACATACATACTTCGTACC
GTACTAATTTATCCGCGCCGGAGGTTTGTTATTTTTTTGTTTTTGTTTGA
TGTGTGTCGCCGCGTGCCGCCGCGTAGGGGAAATGCGTGTTTGGCGGCGG
CGTGCAACCTTACTTCCTTACGTACGTAGGAAAACCCTCTCTGGTAGAAC
CATGTCCGGCGATGCCCATCTGGATCTCGGTCTTGGACTTTTTGACCTGC
TAGGCATTTGTGTGAACAGCGTTGTGGTGAAGCCAAGCGCTGCGATCGCG
CCTTGAAGAGGCGAGCCTGTCCGTTTGGAGTGAGCTGGACACGTTTCGAT
CGATTTTAAGTTTGCTTTACACATGATACGCTTGACTGTTTATGGGCCCG
GTTGTGATAGAAATCTCACTCGTTTGAATCATGTTAAATTGCGTGGAAGG
GACCGACAACTTACGTATATTTCGTGGACACTGCTTGCTGTGTAGGGGAG
CATTTCACGTTTCATGTCTCGTCCTTCGAAACAGGGGTCTCTTCGTACAT
CATGTACATAAACTTCACTCCTTTTATTTTATCCAGGTGTTTTCTCTTGA
TGATCAAGTGGATCGGTCGTCACTGTGCTTGCCTTTACACTACTACTGAA
GCAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig75:33545..38200+

>mRNA_L-elsbetiae_contig75.16393.1 ID=mRNA_L-elsbetiae_contig75.16393.1|Name=mRNA_L-elsbetiae_contig75.16393.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig75:33545..38200+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCAACAAAACGACTACTGCGCTTCCCTTCCGGGTGCCCCCTTCGG
CATGGCTGCGGAGGGAAAGTACTTTGACCCTGCGGGACTGGCTGCGAAGC
AGGACAACGAGACCATCAAAAAGTGGCGCGAGGCCGAACTCAAGCACGGA
CGCGTCAGCATGTTGGCGGCGATGGGCATCCTCGTGTCCGAGATGGCGCA
ACAAAACGACTACTGCGCTTCCCTTCCGGGTGCCCCCTTCGGCATGGCTG
CGGAGGGAAAGTACTTTGACCCTGCGGGACTGGCTGCGAAGCAGGACAAC
GAGACCATCAAAAAGTGGCGCGAGGCCGAACTCAAGCACGGACGCGTCAG
CATGTTGGCGGCGATGGGCATCCTCGTGTCCGAGGTGTTCCACCCCTTCT
TCATGGGCCCCGCTTACATCGGCCCGGCTGTAGAGCACGCACAGGTGTTC
CACCCCTTCTTCATGGGCCCCGCTTACATCGGCCCGGCTGTAGAGCACGC
ACAGCAAATCGCGACGGTGTACCCCCTGTTCTGGGTAGGCTCGGTAGGCC
TCATCGCCTTCATCGAGGGTCAGACTATCAAGGATGCTTGGGGAACCGTT
TCGCCAGTCACCGGTGTCGGGAACCTGAAGGAGGAGTACTACCCTGGAGA
CCTTGGATTCGACCCGCTCGCAAATCGCGACGGTGTACCCCCTGTTCTGG
GTAGGCTCGGTAGGCCTCATCGCCTTCATCGAGGGTCAGACTATCAAGGA
TGCTTGGGGAACCGTTTCGCCAGTCACCGGTGTCGGGAACCTGAAGGAGG
AGTACTACCCTGGAGACCTTGGATTCGACCCGCTCGGCCTGGCACCCAAG
GACGGGGAGGACTTCCGCTTGATCCAGTCGCAGGAGCTCGACCTCGGGCG
GTATGCGATGATCGGCGTTCTTGGAATGATCGTGCAAGAGTGCGTTGACG
GGCAAGGCATTTTGGAGCACGTCATCTCGCGGGTCTAGGCCTGGCACCCA
AGGACGGGGAGGACTTCCGCTTGATCCAGTCGCAGGAGCTCGACCTCGGG
CGGTATGCGATGATCGGCGTTCTTGGAATGATCGTGCAAGAGTGCGTTGA
CGGGCAAGGCATTTTGGAGCACGTCATCTCGCGGGTCTAG
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