mRNA_L-elsbetiae_contig7499.16388.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7499.16388.1
Unique NamemRNA_L-elsbetiae_contig7499.16388.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.580e-33
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    7 RSKVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            + +VFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR
Sbjct:   35 KGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 4.540e-33
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    7 RSKVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            + +VFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR
Sbjct:   35 KGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.410e-28
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    7 RSKVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            + +VFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:   35 KGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.370e-21
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    7 RSKVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            + KV++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct:   35 QGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 88.2 bits (217), Expect = 4.600e-21
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   16 VFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            V +TIA  IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVLLW+
Sbjct:   74 VHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.630e-20
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   13 KVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            K F+TIA  +R+  EK YGRGWN +VG SFGAYVTHEIKTY+YF+V  GV VL+WR
Sbjct:   42 KTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 84.7 bits (208), Expect = 4.790e-20
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   13 KVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            K F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   43 KTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: F0W814_9STRA (Dynein light chain n=3 Tax=Albugo TaxID=65356 RepID=F0W814_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.540e-19
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   13 KVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            K F++IA  IR+  EK YGRGWN VVG SFGA+VTHEIKTY+YF+V  GV +LLW+
Sbjct:   40 KTFSSIADFIRRNMEKEYGRGWNCVVGNSFGAFVTHEIKTYVYFSVTFGVSILLWK 95
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.270e-18
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   22 TTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 180
            +TIA  IRK F+  +  GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct:   64 STIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116
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BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 2.880e-18
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   13 KVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 171
            K F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL
Sbjct:   43 KTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7499.16388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF01_9PHAE1.580e-3394.83Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D7FQ30_ECTSI4.540e-3394.83Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CC04_9STRA2.410e-2879.31Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S4E7C9_9STRA4.370e-2167.24Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
A0A482S6R4_9ARCH4.600e-2170.91Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485KYL8_9STRA1.630e-2067.86Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A0P1AY91_PLAHL4.790e-2067.86Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
F0W814_9STRA2.540e-1966.07Dynein light chain n=3 Tax=Albugo TaxID=65356 RepI... [more]
A0A7S3H299_9STRA1.270e-1869.81Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]
H3HCG0_PHYRM2.880e-1869.81Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7499contigL-elsbetiae_contig7499:451..630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7FQ30
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007670.1
Exons1
Model size180
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.303124-CDS-L-elsbetiae_contig7499:450..6301622816833.303124-CDS-L-elsbetiae_contig7499:450..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7499 451..630 +
1691683847.9793558-CDS-L-elsbetiae_contig7499:450..6301691683847.9793558-CDS-L-elsbetiae_contig7499:450..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7499 451..630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7499.16388.1prot_L-elsbetiae_contig7499.16388.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7499 451..630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7499.16388.1

>prot_L-elsbetiae_contig7499.16388.1 ID=prot_L-elsbetiae_contig7499.16388.1|Name=mRNA_L-elsbetiae_contig7499.16388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MIRSKVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTV
VPGVYVLLWR
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mRNA from alignment at L-elsbetiae_contig7499:451..630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7499.16388.1 ID=mRNA_L-elsbetiae_contig7499.16388.1|Name=mRNA_L-elsbetiae_contig7499.16388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=180bp|location=Sequence derived from alignment at L-elsbetiae_contig7499:451..630+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATACGATCAAAGGTGTTCACAACAATCGCCTCGTGCATTCGGAAAGC
GTTTGAGAAATCGTACGGGCGGGGCTGGAACGTTGTCGTGGGGAGAAGTT
TCGGGGCCTACGTAACGCACGAGATCAAGACTTACATGTACTTTACGGTT
GTCCCCGGGGTCTACGTCTTGCTCTGGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7499:451..630+

>mRNA_L-elsbetiae_contig7499.16388.1 ID=mRNA_L-elsbetiae_contig7499.16388.1|Name=mRNA_L-elsbetiae_contig7499.16388.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig7499:451..630+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATACGATCAAAGGTGTTCACAACAATCGCCTCGTGCATTCGGAAAGC
GTTTGAGAAATCGTACGGGCGGGGCTGGAACGTTGTCGTGGGGAGAAGTT
TCGGGGCCTACGTAACGCACGAGATCAAGACTTACATGTACTTTACGGTT
GTCCCCGGGGTCTACGTCTTGCTCTGGAGGATGATACGATCAAAGGTGTT
CACAACAATCGCCTCGTGCATTCGGAAAGCGTTTGAGAAATCGTACGGGC
GGGGCTGGAACGTTGTCGTGGGGAGAAGTTTCGGGGCCTACGTAACGCAC
GAGATCAAGACTTACATGTACTTTACGGTTGTCCCCGGGGTCTACGTCTT
GCTCTGGAGG
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