mRNA_L-elsbetiae_contig7498.16387.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7498.16387.1
Unique NamemRNA_L-elsbetiae_contig7498.16387.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7498.16387.1 vs. uniprot
Match: A0A6H5L7V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.000e-6
Identity = 38/75 (50.67%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:  136 AEAAVCARSSPTSAVVTGEEGSNRGEAAAAVTTPNPGSAEDAETRRANRLKRARLMTGHYKLAVMKHSSEQQENA 360
            AE  VCA S P    V     +  G           G A+D ETRRANRLKR RLM+GHYKLAV++HSSEQQ  +
Sbjct:  686 AEGKVCAASQPEPEGVGAPSSAAEG-----------GRADDEETRRANRLKRMRLMSGHYKLAVLEHSSEQQHES 749
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7498.16387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7V8_9PHAE5.000e-650.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7498contigL-elsbetiae_contig7498:7623..9406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1784
Cds size1044
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7498.16387.1prot_L-elsbetiae_contig7498.16387.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7498 7923..8966 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.2450862-UTR-L-elsbetiae_contig7498:7622..79221622816833.2450862-UTR-L-elsbetiae_contig7498:7622..7922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7498 7623..7922 +
1691683847.9329777-UTR-L-elsbetiae_contig7498:7622..79221691683847.9329777-UTR-L-elsbetiae_contig7498:7622..7922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7498 7623..7922 +
1622816833.2702549-UTR-L-elsbetiae_contig7498:8966..94061622816833.2702549-UTR-L-elsbetiae_contig7498:8966..9406Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7498 8967..9406 +
1691683847.9605944-UTR-L-elsbetiae_contig7498:8966..94061691683847.9605944-UTR-L-elsbetiae_contig7498:8966..9406Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7498 8967..9406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816833.259221-CDS-L-elsbetiae_contig7498:7922..89661622816833.259221-CDS-L-elsbetiae_contig7498:7922..8966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7498 7923..8966 +
1691683847.9430535-CDS-L-elsbetiae_contig7498:7922..89661691683847.9430535-CDS-L-elsbetiae_contig7498:7922..8966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7498 7923..8966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7498.16387.1

>prot_L-elsbetiae_contig7498.16387.1 ID=prot_L-elsbetiae_contig7498.16387.1|Name=mRNA_L-elsbetiae_contig7498.16387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=348bp
MTGHYKLAVMKHSSEQQENATGDGAGGTSNDLAPGVRPSGGGGGGGDSAE
GSDDVSSAGGLSDLDDTSSGDESESGGDGGGGGGGGGVDDAADGRASGER
SSTAEKGERASPATETGGRKGGSRDSGGARSNAARKHKALSGDSSRNRGR
RVGDDDDGGRRHGGSQRKDKQQSSGSERRRDKERADNSRGDDRRRSSRKG
KSRSRSASRGRGGGGDRDDRMARRPGSGDRDRSSGGGNRTDTRDRKGDGR
GERSESDRKPSSKSSSSKKLDSAGHRGKGTRAGDSRERTREQPRSERGGA
DSSSRRRSDESRHEKEREKTSSRRRSRSRDRDESRERGGSTKRSRRR*
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mRNA from alignment at L-elsbetiae_contig7498:7623..9406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7498.16387.1 ID=mRNA_L-elsbetiae_contig7498.16387.1|Name=mRNA_L-elsbetiae_contig7498.16387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1784bp|location=Sequence derived from alignment at L-elsbetiae_contig7498:7623..9406+ (Laminarionema elsbetiae ELsaHSoW15)
CTAGGGATAGCGCTTTCTAGGATCGACCAGAGAGAGGGAAAGAGCAGTAG
TAGTTCACCACAGGACCGCGCCTCGAAAGAATCCGGCCGTAAAAGCAGCA
CCAAGGCGAAGGACGGAACTGGTAAAGGGGGCGGGGCTGAAGCGGCAGTG
TGTGCGAGGTCATCGCCGACTTCCGCCGTGGTCACTGGCGAGGAAGGGAG
CAACAGAGGGGAAGCGGCGGCGGCGGTGACTACTCCTAACCCCGGTTCTG
CCGAAGACGCGGAGACAAGGCGGGCAAATCGCCTCAAGCGGGCGCGACTC
ATGACCGGCCACTACAAGCTAGCGGTGATGAAGCACTCATCCGAACAACA
GGAGAATGCCACCGGCGACGGAGCAGGAGGTACGTCCAACGACCTAGCCC
CGGGAGTGAGGCCGTCTGGTGGTGGTGGCGGTGGCGGTGATAGTGCCGAA
GGAAGCGATGACGTCTCGTCTGCAGGTGGCCTCTCGGACTTAGATGACAC
TAGCAGCGGCGACGAGTCGGAAAGCGGAGGCGATGGCGGCGGCGGCGGCG
GTGGCGGCGGCGTTGACGACGCTGCGGATGGGAGAGCGAGCGGCGAACGA
TCATCCACGGCGGAGAAGGGTGAGCGCGCATCCCCGGCGACGGAGACCGG
GGGCAGAAAAGGCGGGTCGCGGGATAGCGGTGGTGCTCGAAGCAACGCCG
CCAGAAAGCACAAAGCCTTGTCTGGCGACAGCTCGCGTAACCGGGGGCGA
AGAGTAGGCGACGACGATGACGGGGGACGGCGACATGGTGGGAGTCAACG
GAAGGACAAGCAGCAGTCCTCCGGCAGCGAGAGAAGGAGGGACAAGGAAC
GCGCTGATAACTCTCGCGGGGACGACCGACGAAGGAGTTCTCGTAAGGGC
AAGAGCAGGAGCCGCAGCGCCAGCCGAGGCCGGGGTGGCGGTGGCGACCG
CGACGACCGGATGGCTCGGAGGCCAGGAAGCGGCGATAGAGATCGGTCAT
CGGGCGGCGGGAATCGTACCGATACAAGGGACAGGAAGGGCGACGGTCGT
GGGGAGAGGTCCGAAAGTGATCGTAAACCAAGTTCCAAGTCATCATCTTC
GAAGAAGTTGGACAGTGCGGGGCACCGGGGTAAGGGAACGAGGGCGGGGG
ACAGTAGAGAACGAACTCGGGAGCAGCCGCGGAGCGAACGCGGGGGCGCC
GACTCTAGTAGCAGGAGGCGATCGGACGAATCCCGTCACGAGAAGGAGCG
TGAAAAAACGAGTAGTAGGAGGAGAAGCAGGAGCAGAGACAGGGACGAGA
GTAGGGAGAGGGGTGGCAGTACAAAACGATCGAGGAGGCGCTAGTGGGTC
ACGGAAGTTTATTTTTGCTGCGCCGGTGTTATGTCCAGTGCAATGGCTGT
TGTCGGCGTCCTCAGCACTTCGCTCGTTTTCGAAAGCAGAAAACGGGCTT
TTCACTTTAAAAAATTGAAATACTTGTACCACGACGATAGAGTTCAGTTT
TTTACGTCATGTTTTTTACAGAGCCATGGTTGGCGATTTAATCGAGCGTT
CTATGGTCCGTGCGCAACAATACGGCCTATGACGTTTTTTGTCATAACTT
TTGAAATAAATCGATTCAGCCAGAATTCCAGCCATCCTAGTGATCCCCAG
CCTTAATTAAGGCTGGCCACGATCACGTGGCCAAGGGGAAAAGGCCAAAC
CCCAGAAAAGGCGAAGAGGCATGTTGTGTTTTGTGGTCCGCACCCGGCAA
AACCTGACGTAGTCAGCAGCTTGTCGTTCTTTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7498:7623..9406+

>mRNA_L-elsbetiae_contig7498.16387.1 ID=mRNA_L-elsbetiae_contig7498.16387.1|Name=mRNA_L-elsbetiae_contig7498.16387.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2088bp|location=Sequence derived from alignment at L-elsbetiae_contig7498:7623..9406+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGCCACTACAAGCTAGCGGTGATGAAGCACTCATCCGAACAACA
GGAGAATGCCACCGGCGACGGAGCAGGAGGTACGTCCAACGACCTAGCCC
CGGGAGTGAGGCCGTCTGGTGGTGGTGGCGGTGGCGGTGATAGTGCCGAA
GGAAGCGATGACGTCTCGTCTGCAGGTGGCCTCTCGGACTTAGATGACAC
TAGCAGCGGCGACGAGTCGGAAAGCGGAGGCGATGGCGGCGGCGGCGGCG
GTGGCGGCGGCGTTGACGACGCTGCGGATGGGAGAGCGAGCGGCGAACGA
TCATCCACGGCGGAGAAGGGTGAGCGCGCATCCCCGGCGACGGAGACCGG
GGGCAGAAAAGGCGGGTCGCGGGATAGCGGTGGTGCTCGAAGCAACGCCG
CCAGAAAGCACAAAGCCTTGTCTGGCGACAGCTCGCGTAACCGGGGGCGA
AGAGTAGGCGACGACGATGACGGGGGACGGCGACATGGTGGGAGTCAACG
GAAGGACAAGCAGCAGTCCTCCGGCAGCGAGAGAAGGAGGGACAAGGAAC
GCGCTGATAACTCTCGCGGGGACGACCGACGAAGGAGTTCTCGTAAGGGC
AAGAGCAGGAGCCGCAGCGCCAGCCGAGGCCGGGGTGGCGGTGGCGACCG
CGACGACCGGATGGCTCGGAGGCCAGGAAGCGGCGATAGAGATCGGTCAT
CGGGCGGCGGGAATCGTACCGATACAAGGGACAGGAAGGGCGACGGTCGT
GGGGAGAGGTCCGAAAGTGATCGTAAACCAAGTTCCAAGTCATCATCTTC
GAAGAAGTTGGACAGTGCGGGGCACCGGGGTAAGGGAACGAGGGCGGGGG
ACAGTAGAGAACGAACTCGGGAGCAGCCGCGGAGCGAACGCGGGGGCGCC
GACTCTAGTAGCAGGAGGCGATCGGACGAATCCCGTCACGAGAAGGAGCG
TGAAAAAACGAGTAGTAGGAGGAGAAGCAGGAGCAGAGACAGGGACGAGA
GTAGGGAGAGGGGTGGCAGTACAAAACGATCGAGGAGGCGCTAGATGACC
GGCCACTACAAGCTAGCGGTGATGAAGCACTCATCCGAACAACAGGAGAA
TGCCACCGGCGACGGAGCAGGAGGTACGTCCAACGACCTAGCCCCGGGAG
TGAGGCCGTCTGGTGGTGGTGGCGGTGGCGGTGATAGTGCCGAAGGAAGC
GATGACGTCTCGTCTGCAGGTGGCCTCTCGGACTTAGATGACACTAGCAG
CGGCGACGAGTCGGAAAGCGGAGGCGATGGCGGCGGCGGCGGCGGTGGCG
GCGGCGTTGACGACGCTGCGGATGGGAGAGCGAGCGGCGAACGATCATCC
ACGGCGGAGAAGGGTGAGCGCGCATCCCCGGCGACGGAGACCGGGGGCAG
AAAAGGCGGGTCGCGGGATAGCGGTGGTGCTCGAAGCAACGCCGCCAGAA
AGCACAAAGCCTTGTCTGGCGACAGCTCGCGTAACCGGGGGCGAAGAGTA
GGCGACGACGATGACGGGGGACGGCGACATGGTGGGAGTCAACGGAAGGA
CAAGCAGCAGTCCTCCGGCAGCGAGAGAAGGAGGGACAAGGAACGCGCTG
ATAACTCTCGCGGGGACGACCGACGAAGGAGTTCTCGTAAGGGCAAGAGC
AGGAGCCGCAGCGCCAGCCGAGGCCGGGGTGGCGGTGGCGACCGCGACGA
CCGGATGGCTCGGAGGCCAGGAAGCGGCGATAGAGATCGGTCATCGGGCG
GCGGGAATCGTACCGATACAAGGGACAGGAAGGGCGACGGTCGTGGGGAG
AGGTCCGAAAGTGATCGTAAACCAAGTTCCAAGTCATCATCTTCGAAGAA
GTTGGACAGTGCGGGGCACCGGGGTAAGGGAACGAGGGCGGGGGACAGTA
GAGAACGAACTCGGGAGCAGCCGCGGAGCGAACGCGGGGGCGCCGACTCT
AGTAGCAGGAGGCGATCGGACGAATCCCGTCACGAGAAGGAGCGTGAAAA
AACGAGTAGTAGGAGGAGAAGCAGGAGCAGAGACAGGGACGAGAGTAGGG
AGAGGGGTGGCAGTACAAAACGATCGAGGAGGCGCTAG
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