mRNA_L-elsbetiae_contig7464.16354.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7464.16354.1
Unique NamemRNA_L-elsbetiae_contig7464.16354.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7464.16354.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.570e-6
Identity = 33/112 (29.46%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:  133 MHPGEDPDIFFVRIDQLIDDLETLGEPTTSHRKMDIILSGLSNEYRMVRFQAMKDSKLSLEDLIIMMRNLYVNGMTQSRTLS---RGSAMYTENSNAVMDKSNKKCHGCGKL 459
            M  GEDPD FF+ ++ +    + + E  +  R  D+IL  +SN+Y  VR  + +     LE++   M+++Y++ ++++ T S   RG AM   N ++++     KC  CG+ 
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWTKSVAGRGVAMPASNGDSII-----KCFNCGQF 107
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BLAST of mRNA_L-elsbetiae_contig7464.16354.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 3.560e-5
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  106 LMRRLDNSVMHPGEDPDIFFVRIDQLIDDLETLGEPTTSHRKMDIILSGLSNEYRMVRFQAMKDSKLSLEDLIIMMRNLYVN 351
            L+RRL+   MHPGEDP +FF R+D +I+ ++ +G   +    + II+  L++EY + R   + D  +S   +  ++R  Y N
Sbjct:   42 LVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILVDPTISRAKVENVVRTAYAN 123
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BLAST of mRNA_L-elsbetiae_contig7464.16354.1 vs. uniprot
Match: A0A6H5JQJ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.520e-5
Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  106 LMRRLDNSVMHPGEDPDIFFVRIDQLIDDLETLGEPTTSHRKMDIILSGLSNEYRMVRFQAMKDSKLSLEDLIIMMRNLYVN 351
            L+RRL+   MHPGEDP +FF R+D +I+ ++ +G   +    + II+  L+++Y + R   + D  +S   +  ++R  Y N
Sbjct:   42 LVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHKYDIERESILADPTISRAKVENVVRAAYAN 123
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BLAST of mRNA_L-elsbetiae_contig7464.16354.1 vs. uniprot
Match: A0A6H5JQ49_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.840e-5
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  106 LMRRLDNSVMHPGEDPDIFFVRIDQLIDDLETLGEPTTSHRKMDIILSGLSNEYRMVRFQAMKDSKLSLEDLIIMMRNLYVN 351
            L+RRL+   MHPGEDP +FF R+D +I+ ++ +G   +    + II+  L++EY + R   + D  +S   +  ++R  Y N
Sbjct:   42 LVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYAN 123
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BLAST of mRNA_L-elsbetiae_contig7464.16354.1 vs. uniprot
Match: A0A6H5JS28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 9.140e-5
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  106 LMRRLDNSVMHPGEDPDIFFVRIDQLIDDLETLGEPTTSHRKMDIILSGLSNEYRMVRFQAMKDSKLSLEDLIIMMRNLYVN 351
            L+RRL+   MHPGEDP +FF R+D +I+ ++ +G   +    + II+  L++EY + R   + D  +S   +  ++R  Y N
Sbjct:   42 LVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYAN 123
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BLAST of mRNA_L-elsbetiae_contig7464.16354.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 9.830e-5
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  106 LMRRLDNSVMHPGEDPDIFFVRIDQLIDDLETLGEPTTSHRKMDIILSGLSNEYRMVRFQAMKDSKLSLEDLIIMMRNLYVN 351
            L+RRL+   MHPGEDP +FF R+D +I+ ++ +G   +    + II+  L++EY + R   + D  +S   +  ++R  Y N
Sbjct:  174 LVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYAN 255
[Close]
BLAST of mRNA_L-elsbetiae_contig7464.16354.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 9.900e-5
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  106 LMRRLDNSVMHPGEDPDIFFVRIDQLIDDLETLGEPTTSHRKMDIILSGLSNEYRMVRFQAMKDSKLSLEDLIIMMRNLYVN 351
            L+RRL+   MHPGEDP +FF R+D +I+ ++ +G   +    + II+  L++EY + R   + D  +S   +  ++R  Y N
Sbjct:  229 LVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYAN 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7464.16354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE8.570e-629.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K4K8_9PHAE3.560e-534.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQJ2_9PHAE5.520e-532.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ49_9PHAE8.840e-534.15Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS28_9PHAE9.140e-534.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP6_9PHAE9.830e-534.15CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE9.900e-534.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7464contigL-elsbetiae_contig7464:4414..4947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size534
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.822214-CDS-L-elsbetiae_contig7464:4413..49471622816830.822214-CDS-L-elsbetiae_contig7464:4413..4947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7464 4414..4947 -
1691683846.212139-CDS-L-elsbetiae_contig7464:4413..49471691683846.212139-CDS-L-elsbetiae_contig7464:4413..4947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7464 4414..4947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7464.16354.1prot_L-elsbetiae_contig7464.16354.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7464 4414..4947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7464.16354.1

>prot_L-elsbetiae_contig7464.16354.1 ID=prot_L-elsbetiae_contig7464.16354.1|Name=mRNA_L-elsbetiae_contig7464.16354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MTRFDSKSGDSADGQQAWNALVKKYENDSSQRRRTLMRRLDNSVMHPGED
PDIFFVRIDQLIDDLETLGEPTTSHRKMDIILSGLSNEYRMVRFQAMKDS
KLSLEDLIIMMRNLYVNGMTQSRTLSRGSAMYTENSNAVMDKSNKKCHGC
GKLGHFKYECHNMESTSNQNPVHKFKGK
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mRNA from alignment at L-elsbetiae_contig7464:4414..4947-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7464.16354.1 ID=mRNA_L-elsbetiae_contig7464.16354.1|Name=mRNA_L-elsbetiae_contig7464.16354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig7464:4414..4947- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTAGATTTGATTCAAAGTCAGGCGACAGCGCAGACGGTCAACAAGC
ATGGAACGCTCTCGTAAAAAAATACGAGAATGATTCTTCGCAAAGGCGTA
GAACACTAATGAGACGACTAGACAACTCCGTTATGCATCCTGGAGAAGAT
CCCGACATCTTTTTCGTACGGATAGACCAACTTATCGATGATCTCGAAAC
ACTGGGGGAACCCACAACTTCCCATCGAAAAATGGACATCATACTATCGG
GACTCTCTAACGAATATAGGATGGTAAGATTTCAGGCCATGAAGGATTCA
AAACTCTCATTAGAGGATCTTATCATCATGATGAGAAACCTATACGTCAA
TGGCATGACACAATCTAGAACGCTATCTAGAGGATCAGCCATGTATACTG
AAAATTCGAATGCAGTTATGGACAAGTCGAATAAGAAATGCCACGGGTGT
GGTAAACTCGGACATTTCAAATACGAGTGTCATAACATGGAAAGTACTTC
GAACCAAAACCCAGTACACAAGTTCAAGGGCAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7464:4414..4947-

>mRNA_L-elsbetiae_contig7464.16354.1 ID=mRNA_L-elsbetiae_contig7464.16354.1|Name=mRNA_L-elsbetiae_contig7464.16354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig7464:4414..4947- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTAGATTTGATTCAAAGTCAGGCGACAGCGCAGACGGTCAACAAGC
ATGGAACGCTCTCGTAAAAAAATACGAGAATGATTCTTCGCAAAGGCGTA
GAACACTAATGAGACGACTAGACAACTCCGTTATGCATCCTGGAGAAGAT
CCCGACATCTTTTTCGTACGGATAGACCAACTTATCGATGATCTCGAAAC
ACTGGGGGAACCCACAACTTCCCATCGAAAAATGGACATCATACTATCGG
GACTCTCTAACGAATATAGGATGGTAAGATTTCAGGCCATGAAGGATTCA
AAACTCTCATTAGAGGATCTTATCATCATGATGAGAAACCTATACGTCAA
TGGCATGACACAATCTAGAACGCTATCTAGAGGATCAGCCATGTATACTG
AAAATTCGAATGCAGTTATGGACAAGTCGAATAAGAAATGCCACGGGTGT
GGTAAACTCGGACATTTCAAATACGAGTGTCATAACATGGAAAGTACTTC
GAACCAAAACCCAGTACACAAGTTCAAGGGCAAAATGACTAGATTTGATT
CAAAGTCAGGCGACAGCGCAGACGGTCAACAAGCATGGAACGCTCTCGTA
AAAAAATACGAGAATGATTCTTCGCAAAGGCGTAGAACACTAATGAGACG
ACTAGACAACTCCGTTATGCATCCTGGAGAAGATCCCGACATCTTTTTCG
TACGGATAGACCAACTTATCGATGATCTCGAAACACTGGGGGAACCCACA
ACTTCCCATCGAAAAATGGACATCATACTATCGGGACTCTCTAACGAATA
TAGGATGGTAAGATTTCAGGCCATGAAGGATTCAAAACTCTCATTAGAGG
ATCTTATCATCATGATGAGAAACCTATACGTCAATGGCATGACACAATCT
AGAACGCTATCTAGAGGATCAGCCATGTATACTGAAAATTCGAATGCAGT
TATGGACAAGTCGAATAAGAAATGCCACGGGTGTGGTAAACTCGGACATT
TCAAATACGAGTGTCATAACATGGAAAGTACTTCGAACCAAAACCCAGTA
CACAAGTTCAAGGGCAAA
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