mRNA_L-elsbetiae_contig7460.16348.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7460.16348.1
Unique NamemRNA_L-elsbetiae_contig7460.16348.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7460.16348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7460contigL-elsbetiae_contig7460:3041..4019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size979
Cds size555
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.4528193-UTR-L-elsbetiae_contig7460:3040..34641622816830.4528193-UTR-L-elsbetiae_contig7460:3040..3464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7460 3041..3464 +
1691683845.9671943-UTR-L-elsbetiae_contig7460:3040..34641691683845.9671943-UTR-L-elsbetiae_contig7460:3040..3464Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7460 3041..3464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.4687283-CDS-L-elsbetiae_contig7460:3464..40191622816830.4687283-CDS-L-elsbetiae_contig7460:3464..4019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 3465..4019 +
1691683845.977891-CDS-L-elsbetiae_contig7460:3464..40191691683845.977891-CDS-L-elsbetiae_contig7460:3464..4019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7460 3465..4019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7460.16348.1prot_L-elsbetiae_contig7460.16348.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7460 3465..4019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7460.16348.1

>prot_L-elsbetiae_contig7460.16348.1 ID=prot_L-elsbetiae_contig7460.16348.1|Name=mRNA_L-elsbetiae_contig7460.16348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
MPTQVRLPQSPSHYRHPALLNPRPCPLKQTRTPLYILFARMWLCCSREES
SIPSVPVLYTDYHISSLPNSLSLCRRLARVISPPHFVVPQNAMCFTVYYQ
APMSGASICCRELESRPEQLPAFFDREVHHQHRDEGVAHGNTQQALRGQT
KALTQRRLRLPSLLTYLKTRSTFTASSLPKPVCGK
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mRNA from alignment at L-elsbetiae_contig7460:3041..4019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7460.16348.1 ID=mRNA_L-elsbetiae_contig7460.16348.1|Name=mRNA_L-elsbetiae_contig7460.16348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=979bp|location=Sequence derived from alignment at L-elsbetiae_contig7460:3041..4019+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCGTTCGTCGTTAATCAGGCTTCCACTTTCAAACTTTTCGTCTCGTGT
ACATGTATACTTCTATGTACGCGTGCGTAGAGCTGCCTGCACTGCATGGA
TAAACTGCAGCAACACACACACATTACTCATTAACTACTAAATTAATAAA
ACCCCCCGGATTCCTCTATTTTCCCACAGAAGTGGCACCGAAAAAACACA
CACAAACCGCGTCGTCAACAAAAACTGAAGAAGATCGCTAAAAACAAGCA
ACAACCCAATCAAACACGACCAACTGCATATCACACGTTCTGCTATTACT
ATGTAGTTCTAAGGCACTACGATATTTAATACTTCCCCACAATCTCCCCG
ACGAACAGCCCAGCCAAACGAGTCTACTCGAGAAACGCCTCTTCTTCCAC
TACACGATTTGGAACACCCGCTAAATGCCAACTCAAGTAAGGCTCCCTCA
ATCTCCCAGCCACTACCGTCACCCCGCCCTGCTCAATCCCCGTCCTTGCC
CTTTGAAACAAACACGCACGCCTCTTTACATCCTCTTCGCCCGCATGTGG
TTGTGCTGTTCGAGAGAAGAAAGCTCCATCCCTTCAGTGCCAGTTCTATA
TACGGATTATCACATATCCTCCTTGCCGAACTCTCTCTCTCTATGTAGAA
GGTTAGCTCGAGTCATCTCGCCTCCTCACTTTGTGGTGCCTCAAAATGCC
ATGTGTTTTACGGTTTACTATCAAGCTCCGATGAGTGGGGCGTCCATTTG
TTGCCGGGAGCTCGAAAGCAGGCCAGAACAACTGCCAGCATTCTTTGACA
GGGAGGTGCATCACCAACACAGGGACGAAGGGGTGGCACACGGAAACACA
CAACAAGCGCTTCGTGGGCAGACGAAGGCGCTGACACAGAGGAGGTTGCG
ACTTCCTTCCTTACTTACTTACTTAAAGACTCGGTCAACTTTCACAGCCT
CATCCCTCCCGAAGCCCGTTTGCGGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7460:3041..4019+

>mRNA_L-elsbetiae_contig7460.16348.1 ID=mRNA_L-elsbetiae_contig7460.16348.1|Name=mRNA_L-elsbetiae_contig7460.16348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig7460:3041..4019+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAACTCAAGTAAGGCTCCCTCAATCTCCCAGCCACTACCGTCACCC
CGCCCTGCTCAATCCCCGTCCTTGCCCTTTGAAACAAACACGCACGCCTC
TTTACATCCTCTTCGCCCGCATGTGGTTGTGCTGTTCGAGAGAAGAAAGC
TCCATCCCTTCAGTGCCAGTTCTATATACGGATTATCACATATCCTCCTT
GCCGAACTCTCTCTCTCTATGTAGAAGGTTAGCTCGAGTCATCTCGCCTC
CTCACTTTGTGGTGCCTCAAAATGCCATGTGTTTTACGGTTTACTATCAA
GCTCCGATGAGTGGGGCGTCCATTTGTTGCCGGGAGCTCGAAAGCAGGCC
AGAACAACTGCCAGCATTCTTTGACAGGGAGGTGCATCACCAACACAGGG
ACGAAGGGGTGGCACACGGAAACACACAACAAGCGCTTCGTGGGCAGACG
AAGGCGCTGACACAGAGGAGGTTGCGACTTCCTTCCTTACTTACTTACTT
AAAGACTCGGTCAACTTTCACAGCCTCATCCCTCCCGAAGCCCGTTTGCG
GCAAGATGCCAACTCAAGTAAGGCTCCCTCAATCTCCCAGCCACTACCGT
CACCCCGCCCTGCTCAATCCCCGTCCTTGCCCTTTGAAACAAACACGCAC
GCCTCTTTACATCCTCTTCGCCCGCATGTGGTTGTGCTGTTCGAGAGAAG
AAAGCTCCATCCCTTCAGTGCCAGTTCTATATACGGATTATCACATATCC
TCCTTGCCGAACTCTCTCTCTCTATGTAGAAGGTTAGCTCGAGTCATCTC
GCCTCCTCACTTTGTGGTGCCTCAAAATGCCATGTGTTTTACGGTTTACT
ATCAAGCTCCGATGAGTGGGGCGTCCATTTGTTGCCGGGAGCTCGAAAGC
AGGCCAGAACAACTGCCAGCATTCTTTGACAGGGAGGTGCATCACCAACA
CAGGGACGAAGGGGTGGCACACGGAAACACACAACAAGCGCTTCGTGGGC
AGACGAAGGCGCTGACACAGAGGAGGTTGCGACTTCCTTCCTTACTTACT
TACTTAAAGACTCGGTCAACTTTCACAGCCTCATCCCTCCCGAAGCCCGT
TTGCGGCAAG
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