mRNA_L-elsbetiae_contig7458.16344.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7458.16344.1 vs. uniprot
Match: D7G7A8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A8_ECTSI) HSP 1 Score: 252 bits (644), Expect = 1.890e-79 Identity = 127/192 (66.15%), Postives = 146/192 (76.04%), Query Frame = 1 Query: 445 MFGATTMHIGEAGRGAPRSIILQGGTVATKEGHMRLPGQFYQGLHFGLSAWNEWGEKLDDKENGRRNKELREALKELNPQPSAIHPTTFEGAVEGFTVEFSAGTLGRQAKRSVRHRSDPVWSEAERAVLQLARRFQQ--ALKWQPKVWGPGHEDDEDLHTSVLQEVLPARTGLRKLASTVVVYRVAKPAPAP 1014 M GATT+ IG+ GRG+ R +ILQG TVA KEGH+RLP QF+QG+HFG+SAW+ WGEKL D EN +RN LR+ L+ +PQP+ I+PT FEG VEGFTV F AG+L RQ RSVR RSDP W+EAE +VL AR FQQ KW PKVWGPGHE DE+LHTSVLQEVLP RTGLR L S VVVYRV P P Sbjct: 1 MRGATTITIGDGGRGSHRQVILQGATVAPKEGHLRLPDQFFQGVHFGVSAWDVWGEKLMDAENRKRNGALRQVLEGQDPQPTFIYPTMFEGGVEGFTVAFLAGSLSRQEMRSVRERSDPAWAEAETSVLTAARHFQQLTVTKWHPKVWGPGHERDENLHTSVLQEVLPTRTGLRALTSAVVVYRVETAVPLP 192
BLAST of mRNA_L-elsbetiae_contig7458.16344.1 vs. uniprot
Match: A0A7S2SW41_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW41_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.530e-17 Identity = 69/219 (31.51%), Postives = 109/219 (49.77%), Query Frame = 1 Query: 397 RRIPSTDEQAFLHDSWMFGATTMHIGEAGRGAPRSIILQGGTVATKE-----GHMRLPGQFYQGLHFGLSAWNEWGEKLDDKENGRRNKELREALKELNPQPSAIHPTTFEG-----AVEGFTVEFSAGTLGRQAKRSVRHRSDPV-WSEAERAVLQLARRFQQAL--KWQPKVWGPGHEDDEDLHTSVLQEVLPARTGLRKLASTVVVYRVAKPAPAP 1014 R +PST+E L S +++ G S + GT+ HM+LP ++Y+ +H G+S ++ ++ +++ EL +AL L P+P+A+ P E +EG+ V F L Q +R D W++A +AV +ARR+ Q L +W WG +D D H+SVLQE++P R+GL+ L S+ V YRV P P Sbjct: 124 RTLPSTEEMEDLKYSLSHSVSSI-------GVSMSENVTLGTLVKPHPMHGHSHMKLPDEWYKCVHIGVSTYDMVSPNNTREDQRQQSSELYDALISLTPEPTAVLPWVCETNTTYWTIEGWAVRFCYDHL--QDLGFLRPGVDKARWAKASKAVESVARRYDQLLIMQWYSYEWGHPPDDSSDPHSSVLQEIVPIRSGLQPLRSSAVAYRVNAELPPP 333
BLAST of mRNA_L-elsbetiae_contig7458.16344.1 vs. uniprot
Match: A0A7S2CPZ2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPZ2_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 5.130e-12 Identity = 71/289 (24.57%), Postives = 120/289 (41.52%), Query Frame = 1 Query: 286 YVLLFTIVGAAFSFLVVVHLSSHESGTGAEDTPRLPARRIPSTDEQAFLHDSWMFGATTMHIGEAGRGAPRSIILQGGTVATKEGHMRLPGQFYQGLHFGLSA---------------WN---------------EWGEKLDDKENGRR------NKELREALKELNP-QPSAI-------HPTTFEGAVEGFTVEFSAGTLGRQAKRSVRHRSDPVWSEAERAVLQLARRFQQ--ALKWQPKVWGPGHEDDEDLHTSVLQEVLPARTGLRKLASTVVVYRVAKPAPAP 1014 + + + +VG + + + E G + RRIP+ EQ + + ++ + + + G ++ + + RLP +Y +H G+SA W+ EW E+ + R+ + E+ E L +L P +PSA+ + T++ V+G+ V F L Q + + A V +ARRF Q L W P WG G DE LHT+VLQE++P R+G++ + S VV+R+ P P P Sbjct: 149 FSIFYALVGNPLDYHMKQRKPNLEGGFHDREEFAKKERRIPAEHEQMAMKRALLYSHSVVGVSADEEGTNVTLGMFARSDFEDVAQARLPEVWYHCMHVGVSALDFFDPDLASLSVSDWDDDEFYSTLHESPDDREWHEERGEAWKARKLEVDQNSVEMLEQLWDLRPARPSAVLNWDIASNVTSWPWRVQGWVVRFCPEDLAAQGELGSGPTPKSRFEHAAEGVAVVARRFGQNIVLHWYPHQWGKGALHDEHLHTNVLQEIVPTRSGMQAVRSHGVVWRIGGPVPKP 437 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7458.16344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7458.16344.1 >prot_L-elsbetiae_contig7458.16344.1 ID=prot_L-elsbetiae_contig7458.16344.1|Name=mRNA_L-elsbetiae_contig7458.16344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp MVVDTTHPGEGHPVQRRVSYRRLNEEEHTEGGGVGDNLSVHQTRGGILSKback to top mRNA from alignment at L-elsbetiae_contig7458:2247..6748- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7458.16344.1 ID=mRNA_L-elsbetiae_contig7458.16344.1|Name=mRNA_L-elsbetiae_contig7458.16344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4502bp|location=Sequence derived from alignment at L-elsbetiae_contig7458:2247..6748- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7458:2247..6748- >mRNA_L-elsbetiae_contig7458.16344.1 ID=mRNA_L-elsbetiae_contig7458.16344.1|Name=mRNA_L-elsbetiae_contig7458.16344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig7458:2247..6748- (Laminarionema elsbetiae ELsaHSoW15)back to top |