mRNA_L-elsbetiae_contig7429.16316.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7429.16316.1
Unique NamemRNA_L-elsbetiae_contig7429.16316.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: A0A6H5L0T1_9PHAE (PAP-associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T1_9PHAE)

HSP 1 Score: 427 bits (1097), Expect = 3.240e-147
Identity = 221/245 (90.20%), Postives = 224/245 (91.43%), Query Frame = 3 
Query:   39 LVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQ--VAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVA-GIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQLRSSPYRLLRCIISDPEPAPDS 764
            +VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGL VSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP   APP    A VPGAPSAAR+FYGQ        GGLGG APPGAPPVA GIPGWGDMMRMPYRFDPLFIEDPMNLSNNVG NCFRVYQIQRAWSDAHASL RALDDESQLR+SPYRLLRCIISDPEPAPDS
Sbjct:    1 MVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP---APPTQVAAAVPGAPSAARMFYGQ--------GGLGGVAPPGAPPVAAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGHNCFRVYQIQRAWSDAHASLARALDDESQLRASPYRLLRCIISDPEPAPDS 234
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: A0A835ZHQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ3_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.830e-73
Identity = 135/221 (61.09%), Postives = 159/221 (71.95%), Query Frame = 3 
Query:   27 LPRVLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPS-AARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD 686
             P V VDVSFEGQ HNGQA+N+LV  L++ +PALRPLA++LKQF+ E+GLC SYTGGLSSYAL L+VARYLQEQ++ +D+GSLL GFLDF+GN FDPR TGISV R  YFSR A  P    PP  APV  +P    ++FY      PS  G   GA         G  G      +PYRFDPLFIEDP+ L NNVGRNCFR+YQI+RAWSDAHA+LTRA+D
Sbjct:  126 FPPVHVDVSFEGQWHNGQASNRLVLGLIEEYPALRPLAIVLKQFLKERGLCESYTGGLSSYALVLLVARYLQEQSTHLDAGSLLRGFLDFFGNTFDPRTTGISVTRRCYFSRLAQTPTT-WPPLAAPVQPSPGMGGQVFYPPPPPLPSHPGPHMGAGAAAGGFTGGREG------VPYRFDPLFIEDPLALGNNVGRNCFRIYQIKRAWSDAHAALTRAMD 339
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 7.180e-66
Identity = 124/138 (89.86%), Postives = 127/138 (92.03%), Query Frame = 3 
Query:   36 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQ 449
            V+   +FEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGL VSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP  P P   A VPGAPSAAR+FYGQ
Sbjct: 1787 VIKLTTFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLSVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLP-APPPQVAAAVPGAPSAARMFYGQ 1923
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: W7U5Q9_9STRA (Nucleotidyl transferase domain protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5Q9_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.140e-47
Identity = 117/245 (47.76%), Postives = 145/245 (59.18%), Query Frame = 3 
Query:   36 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPP---SFQGGLGGAAPPGAP------PVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQLRSSPYRLLRCIISD 743
            V +DVS EG  HNG  AN+++  L+    ALRPL L+LKQFM E+GL  SY+GGLSSY L LMVARYLQEQ++ MD+G+LLLGFLDFY NHFDPR  GIS  +  YFSRS+         Q + +             +  PP   + +  LGGA     P           P  G  +  PY+FDPL+IEDP+  SNN+GRNCFR++QIQRAW+DA     R LD  S       RL R + SD
Sbjct: 1145 VHLDVSIEGGQHNGLLANRVIAKLLGENFALRPLVLVLKQFMKERGLMESYSGGLSSYGLVLMVARYLQEQSNAMDTGALLLGFLDFYSNHFDPRSMGISTNQRCYFSRSS---------QQSHL----XXXXXXXXXQNMPPLGSNRRVSLGGAGDVHLPYYYVHQQQQVRPAGGSFLENPYKFDPLYIEDPIRPSNNIGRNCFRIFQIQRAWNDAW----RDLDPGSS--GGVPRLNRIVQSD 1370
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: A0A1Z5KCZ8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCZ8_FISSO)

HSP 1 Score: 178 bits (452), Expect = 3.710e-45
Identity = 113/267 (42.32%), Postives = 150/267 (56.18%), Query Frame = 3 
Query:   42 VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAP-------------VPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAP--PVAGIPGWG-----------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRAL--DDESQLR---SSPYRLLRCIISDPE 749
            +D++F+  GH+G  A Q+V  ++D  P +RPL L+LKQF+  +GL  +YTGGLS+Y L LMVARYLQEQ S  D GSLL+GFLDFYGN+FDPR  GISV   +YFSR +    + A PQ  P             VP      R  +  +G   + +G         A   PVA    +            D   MPY  DPL IEDP+N SNNVGRN FR++ + RA+SDAH +L  +L  D  S +     S Y LL+C++ + +
Sbjct: 1233 LDITFDSPGHHGIEAIQMVTQIMDELPVIRPLLLILKQFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSIGISVKNRQYFSRLSAA--MGAAPQSVPTNETAWRPIGPNHVPTTQFFRRYSFSDKGNIDAHRGANPSVIVQSATSIPVATNNNYFRKPLTQHNNEIDHSAMPYTLDPLLIEDPLNESNNVGRNAFRIFSVLRAFSDAHRALLASLEWDLHSNVEFQDDSEYPLLKCLLQNED 1497
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: A0A1Z5KF72_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF72_FISSO)

HSP 1 Score: 176 bits (447), Expect = 1.690e-44
Identity = 111/265 (41.89%), Postives = 147/265 (55.47%), Query Frame = 3 
Query:   42 VDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSR-SAPLPPVPAPPQVAPVPGAPSAA----------RLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWG-------------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRAL--DDESQLR---SSPYRLLRCIISDPE 749
            +D++F+  GH+G  A Q+V  ++D  P +RPL L+LKQF+  +GL  +YTGGLS+Y L LMVARYLQEQ S  D GSLL+GFLDFYGN+FDPR TGISV   +YFSR SA + P P           P  A          R  +  +G   + +G         A P+                    D   MPY  DPL IEDP+N SNNVGRN FR++ + RA+SDAH +L  +L  D  S +     S Y LL+ ++ + +
Sbjct: 1232 LDITFDSPGHHGIEAIQMVTQIMDELPVMRPLLLILKQFLSNRGLLTAYTGGLSAYGLFLMVARYLQEQESWGDCGSLLMGFLDFYGNNFDPRSTGISVKNRQYFSRLSAVMGPAPQSVPTNETAWRPIGANHLPTTQFFRRYSFSDKGNIDAHRGANPSVIVQSATPIPVTAKNNHHRKPPTQPNNEIDHSAMPYTLDPLLIEDPLNESNNVGRNAFRIFSVLRAFSDAHRALLASLEWDLHSNVEFQDDSEYPLLKFLLQNED 1496
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: A0A7S3JPY7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPY7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.950e-44
Identity = 102/222 (45.95%), Postives = 128/222 (57.66%), Query Frame = 3 
Query:   36 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQ-MDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQ 698
            V +DVSFE   H G  AN+LV  ++D  PA RPL L+LKQ  + +GLC SYTGGLSSYALTL+VARYL EQ S+  D G+LLLGFLDFY + FDPR TGISVGR  +F+R+                   +A R     RG                                 + FDPL++EDP++  NNVGRNCFR+ QIQRAWS+A  +LT A+  +S+
Sbjct: 1090 VKLDVSFEAPWHRGLDANRLVLKMLDDTPAARPLLLVLKQHTVNRGLCASYTGGLSSYALTLLVARYLHEQPSRPTDPGALLLGFLDFYAHRFDPRKTGISVGRRCFFARAE----------------LGTAPRHAVNHRGS--------------------------------FHFDPLYVEDPLSPGNNVGRNCFRIAQIQRAWSEAFFALTEAIRRQSR 1263
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: A0A7S2Q1J0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1J0_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.140e-42
Identity = 104/252 (41.27%), Postives = 143/252 (56.75%), Query Frame = 3 
Query:   36 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQM-DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPA--------PPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALDDESQLRSS-----PYRLLRCIISDPE 749
            V +D+SF+ + H+G  A  +++ L++  P +RPL L+LKQF++++GL  +YTGGLSSY L LMVARY QEQ+    D GSLL+G LDFYGN F+PR TGISV   RYFSR        A        PP+  P+               R  SFQ              A  P        P +FDP+++EDP+N  NNVGRN FR++Q+QRA+SDAH +L  AL+ +    S       Y LL+C++ + +
Sbjct: 1271 VQLDLSFDAKEHHGLEALDMIRHLLEEIPMIRPLVLVLKQFLLDRGLLTAYTGGLSSYCLFLMVARYCQEQSPTWNDRGSLLMGLLDFYGNFFEPRTTGISVRTRRYFSRFGENQHQEARRNNAATKPPRFQPL--------------NRQSSFQ-------------TAQQPN----QLQPGKFDPIWVEDPLNPGNNVGRNAFRIFQVQRAFSDAHRALVAALEWDINSMSEFGEDGEYPLLKCLLQNED 1491
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: A0A1E7FBX4_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBX4_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.180e-42
Identity = 117/282 (41.49%), Postives = 155/282 (54.96%), Query Frame = 3 
Query:   36 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPA---PPQV--------------APVPGAP---------SAARLFYGQRGRPPS-FQGGLGGAAPPGA------------PPVAGIPGWG------DMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD-DESQLRSSPYRLLRCIISD 743
            + +D+SF+G  H+G  ANQ+V  +++  P +RPL L+LKQF++ +GL  +YTGGLSS+ L LMVARYLQEQ    D GSLL+GFLDFYGN FDPR  GISV   +YF+R+     V A   PP +               P+P            S A    G R R P  F    G     G+            P V   P         D +R P+ FD LF+EDP++ SNNVGRN FR+ Q+QRA+SDAH +L  +L+  ES   +  Y LL+CI+ +
Sbjct: 1337 IQLDISFDGPEHHGLEANQMVTLILEELPLIRPLMLVLKQFLLRRGLLTAYTGGLSSHCLFLMVARYLQEQPLSGDCGSLLMGFLDFYGNCFDPRAIGISVRGRQYFARTNNHTAVVAGYEPPAIWNGPHPHTQHAVTNIPIPTGDIDFRRRNSFSDAGSVDGSRRRHPRLFAKPTGSTVASGSSHRFVPRSAPTHPKVVDHPNNNNTNPSFDNVR-PFTFDLLFVEDPLSSSNNVGRNAFRINQVQRAFSDAHRALVASLEWGESAEGAGKYPLLKCILGE 1617
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BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Match: A0A7S1U3N8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N8_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.220e-41
Identity = 106/251 (42.23%), Postives = 129/251 (51.39%), Query Frame = 3 
Query:   36 VLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEKGLCVSYTGGLSSYALTLMVARYLQEQTSQM--DSGSLLLGFLDFYGNHFDPRLTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPPSFQGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNCFRVYQIQRAWSDAHASLTRALD-DESQLRSSPYR--------LLRCIIS-DPEP 752
            V +DVSFE Q H G  AN  +  L+   P LRPL L+LKQF  EKGL  SYTGG+SSYALTL+VARYLQE       D GSLLLGFLDFYG+ FDPR TG+SV R  YFSR      + A PQ        S + L                                         +DP+ IEDP++ +NNVGRNCFR++Q+ +AW     +L   LD D   L    +R        +L CI+  DP P
Sbjct:  207 VRLDVSFESQQHYGVRANGFILHLLAALPPLRPLTLILKQFCKEKGLSASYTGGISSYALTLLVARYLQETLGHSGGDLGSLLLGFLDFYGSKFDPRTTGVSVRRGVYFSR------LHANPQ--------SVSHLNV---------------------------------------YDPIIIEDPLSEANNVGRNCFRIHQVLKAWRAGAKALNARLDQDADDLGGGDHRVGPLENMSILSCIVKGDPFP 404
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7429.16316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0T1_9PHAE3.240e-14790.20PAP-associated domain-containing protein n=1 Tax=E... [more]
A0A835ZHQ3_9STRA1.830e-7361.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHG7_ECTSI7.180e-6689.86LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
W7U5Q9_9STRA1.140e-4747.76Nucleotidyl transferase domain protein n=4 Tax=Mon... [more]
A0A1Z5KCZ8_FISSO3.710e-4542.32Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KF72_FISSO1.690e-4441.89Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3JPY7_9STRA2.950e-4445.95Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S2Q1J0_9STRA2.140e-4241.27Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1E7FBX4_9STRA2.180e-4241.49Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1U3N8_9STRA1.220e-4142.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7429contigL-elsbetiae_contig7429:3757..8961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.8
Seed ortholog evalue2.7e-60
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Exons5
Model size1297
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.5124075-UTR-L-elsbetiae_contig7429:3756..37761622816827.5124075-UTR-L-elsbetiae_contig7429:3756..3776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7429 3757..3776 +
1691683843.8479402-UTR-L-elsbetiae_contig7429:3756..37761691683843.8479402-UTR-L-elsbetiae_contig7429:3756..3776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7429 3757..3776 +
1622816827.5790122-UTR-L-elsbetiae_contig7429:8431..89611622816827.5790122-UTR-L-elsbetiae_contig7429:8431..8961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7429 8432..8961 +
1691683843.9117498-UTR-L-elsbetiae_contig7429:8431..89611691683843.9117498-UTR-L-elsbetiae_contig7429:8431..8961Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7429 8432..8961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816827.5229845-CDS-L-elsbetiae_contig7429:3776..39111622816827.5229845-CDS-L-elsbetiae_contig7429:3776..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 3777..3911 +
1691683843.8613858-CDS-L-elsbetiae_contig7429:3776..39111691683843.8613858-CDS-L-elsbetiae_contig7429:3776..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 3777..3911 +
1622816827.5335798-CDS-L-elsbetiae_contig7429:5377..54541622816827.5335798-CDS-L-elsbetiae_contig7429:5377..5454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 5378..5454 +
1691683843.8729773-CDS-L-elsbetiae_contig7429:5377..54541691683843.8729773-CDS-L-elsbetiae_contig7429:5377..5454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 5378..5454 +
1622816827.5458956-CDS-L-elsbetiae_contig7429:6126..63431622816827.5458956-CDS-L-elsbetiae_contig7429:6126..6343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 6127..6343 +
1691683843.881692-CDS-L-elsbetiae_contig7429:6126..63431691683843.881692-CDS-L-elsbetiae_contig7429:6126..6343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 6127..6343 +
1622816827.5562217-CDS-L-elsbetiae_contig7429:7087..71971622816827.5562217-CDS-L-elsbetiae_contig7429:7087..7197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 7088..7197 +
1691683843.8932574-CDS-L-elsbetiae_contig7429:7087..71971691683843.8932574-CDS-L-elsbetiae_contig7429:7087..7197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 7088..7197 +
1622816827.5697517-CDS-L-elsbetiae_contig7429:8223..84311622816827.5697517-CDS-L-elsbetiae_contig7429:8223..8431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 8224..8431 +
1691683843.9022143-CDS-L-elsbetiae_contig7429:8223..84311691683843.9022143-CDS-L-elsbetiae_contig7429:8223..8431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7429 8224..8431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7429.16316.1prot_L-elsbetiae_contig7429.16316.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7429 3777..8431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7429.16316.1

>prot_L-elsbetiae_contig7429.16316.1 ID=prot_L-elsbetiae_contig7429.16316.1|Name=mRNA_L-elsbetiae_contig7429.16316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MGLPRVLVDVSFEGQGHNGQAANQLVKDLVDGFPALRPLALLLKQFMMEK
GLCVSYTGGLSSYALTLMVARYLQEQTSQMDSGSLLLGFLDFYGNHFDPR
LTGISVGRSRYFSRSAPLPPVPAPPQVAPVPGAPSAARLFYGQRGRPPSF
QGGLGGAAPPGAPPVAGIPGWGDMMRMPYRFDPLFIEDPMNLSNNVGRNC
FRVYQIQRAWSDAHASLTRALDDESQLRSSPYRLLRCIISDPEPAPDS*
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mRNA from alignment at L-elsbetiae_contig7429:3757..8961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7429.16316.1 ID=mRNA_L-elsbetiae_contig7429.16316.1|Name=mRNA_L-elsbetiae_contig7429.16316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5205bp|location=Sequence derived from alignment at L-elsbetiae_contig7429:3757..8961+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGCGGCGGGGCTGATCCGATGGGGCTGCCTCGCGTGTTGGTGGATGTG
AGCTTCGAGGGCCAGGGGCACAACGGACAGGCGGCGAACCAGCTGGTGAA
GGACTTGGTGGACGGGTTTCCGGCTTTGAGGCCCCTGGCGCTCTTGCTCA
AGCAGGTACAGATAGAACAGGTGTTTCGTTTCGTGGCGTCATAGGCCGCG
CCGATGGAGTACATACATGCATGTACCTCGAAGTATGTAACGAATTCGCT
GAGACTATCGCGATTCGACACTGTCGCGATTCGACACAGGTGTTTGTTCC
ATGACGGGGCCACCACGCGCTTCTCTTCTTGTTTCTCAGGCAGCGTCCTG
CCCTCGAGTTATGAGGAGCTTTAAGACACACGTGGTGTGCGTGCTGCTGG
GTGATGGCTTCTGCCGGAACTTTTAATTAATGTAAATGCAAGGTGTGGCC
GCTAACGCGGCCCCGCTTGATTGCAAGCAAGTCCAAGGCAAAAGCCAAAT
ATATCTCCTGTGAAAGTACTCGAGTACCTACCTGCTACGTACAGTACTTC
TGCTGTTGTCGACACCAATCGGCAGCAGTTGCTCTTTGAACAATGCAACA
ATACTTCCGAAAGACACCCGTCGACAGGAAGAGGCGGATGGCTAGCTTCC
ACCAGCGACCGCATTGGAGTACATCCACGTAAAGGATGTGCAAGCAGAAT
TGCGCCCTCCTTATTTAACGGCGCTGCCGCAAGAGTGTACCCGTGTGCAC
CATATTACACGATGTGCATCTAGAGTGCCTCGCAGGGTGGACACGTTCGG
CTCGCGCTTGACCCCTTCGGCGCGCTACCTTTCGGCGAATAAAAGCGGAG
TTTCACGCGAGAGTCACATTTCCGAAAATTCCTAGAAGTATTTATGTAGA
CACGAGAGAGAGAGATAGAGAGATAGAGAGATAGATAGAGAGAGAGAAAG
GCAGAGAGAAAGATAAAGAGGAGAATAACAGCAGTGGAGGGTGTGTGGCA
GCAGGGGGTGGCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGC
GAAAGCGGTGCAGCCCTTTTTGCGATAACAATGTTTTCAAAAAATCAAAA
TGCTCTGGAAGGTATGTGAATCCGGCTCTCTGAAGCCATGCAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAAAAGTAGATGATAGAGAGAGGGGAGGGTGT
GCAGTAGTAGGGGTTGTTCAAGAGAGAGAAAGAGAGAAAGCGAGAGGACG
TGGGAGGCGGTGCACAGCCCTTTACAGAGGGAGTGGAGGAGCGTTCAAGA
TTCCAAATCCATTCCCAACGGGTCAAATGCAGACCGCACAGAGGTCGAAA
ACTTCGAAATACTGCGCGTACAGGCGCCGAGAGCCCGGTGGAACGCAGGC
ATTTCAGGAAAAGTTAAATCTTAATATCAGCAGTCCCACGTCCAGTCTGC
GAAAAAGCCGTTCCAGAGAGACTGTAATTTTCTCGTTGTCTGATATATAT
CTCTCCCTCTTTTTTGCCGCCCCCGGCCTTGTTGCTCGCATTGATTGCAT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTGTTT
CTGTCTGTCTGTCTTTGAAAGTTCATGATGGAGAAGGGACTGTGCGTCAG
CTACACCGGAGGGCTGTCGTCCTACGCGCTCACTCTTATGGTCGCTAGGT
GCGTGGCAAGCGCGGTGGAGAAAAAACTTGGGGTTTGCCCGAAAAAGCTC
TGAGTGTATTGTAGCGCCGCCCGCCGTGCAACCGCATCGTGTATTATTTG
TCCGTGGTCACATGGCTTGGTTGTTTTCAGATCGCCCGGCTCTTTTCTTT
GTCTCGATTTCTGCTGATTCCATCACAAAGCTGCTCCCTCTCTCTCTCTC
TCTCTCTCTCTCATTTAATGTTGCCTGCTCAGGCGAATATGCATGAAGGG
CCGTAAAGAACGGATGGTTTTGGAAGAAAATAAGAAAGAAAAAAAACTAC
CCTTTTCCGTTGATATCGTCAAGTCTTGCAGAACTGACGACAGTAGTGCA
GGTGAACAACCCCTGTCGCCTATCGCCCCCCCCCCCCCCGTCGGCGACGT
GAAAAATATCAATCTCCAAGCCGACCACAAGGACTTTTGACNNNNNNNNN
NTCTGCAAAACGAACCGCCGTTGTTCAAGGAAAACACCCCCCGCCCCTTC
CCCCCCCCCCCCCCCCCCGTCGGCGACGTGAAAAATATCAATCTCCAAGC
CGACCACAAGGACTTTTGACAGCCACCCTTGCCCAATCTTCACCCAACCA
TGACCTATGCCGCGTACACACACCACCGCGGGCCGTTTTCTGCGCGATCG
CACCGAACACTAAAACAAAGATACCTCCAAGAACAAACCAGCCAGATGGA
CTCGGGGTCGCTGCTGCTGGGGTTCCTCGACTTCTACGGGAACCACTTCG
ACCCCCGTCTCACCGGCATAAGCGTCGGGCGCAGCCGCTACTTCTCGCGG
AGCGCCCCGCTGCCCCCCGTGCCCGCTCCGCCCCAGGTGGCGCCGGTTCC
GGGGGCCCCGAGTGCGGCGCGGTTGTTTTACGGCCAGGTGCGCATTTTGT
TGTGTCCTCTTGTGTATTACTCGGTGTAATGTATATAAAGTATGATATTA
TGTAGAAGTATGTCATCTGTGAGACATGGAACCGAGGAGATAATTGTTCT
TCATGGACGGTTGGTTGGTTCCCCAACCGGACCGGAGGTTTTATCCAGAA
TTGTTTATGCCCTGTAGGGCTGGCTCTGAGAGCGCGGCACGGCGGTCGGT
GGTTGTTGGAAACGGGCGGGTGCGGACAGTGAGCGAACTGTGATAAATTC
CGTGTGTATTTTTATCTATATATGGTTTCGCAGAGACGAGTGTGCATAGT
AGTGAGTGCGTGCTTTCTTGTACTCTTTGCAACAGACATATCCCATGCGG
GGGAGTGTTGCTGGCTTCGAAGTTGTAGCCCACTCCCTCTCTGAACGAGC
GACCTGCCCGCAAGATGGCGTTCGAGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCTCCCCCCTCTCTTTTTCACCTCTTTCCCTCCCCCACCNNNNNNNNNNG
CGTTGCGTTTGTGGCCCCCCCCCCCCTTGAAAGCGCGGATGCCCGCCACT
ACGGCGTCTGGCCCCCCCCCCCCCCCCCTCCCGCCCCCCGCCCCTCGCTG
CCGACCCCACCCAACACTCCCTCCCTTCTCTACGTTTCACTGCTTTATTG
CATCGTTCATGACGCCGCCTGCTGAGAGCAGAGAGGCCGTCCCCCGTCTT
TTCAGGGCGGGCTGGGAGGAGCGGCACCTCCAGGGGCCCCGCCGGTCGCG
GGGATCCCTGGCTGGGGTGACATGATGCGCATGCCTTATCGGTGAGGAAA
CCCCCTTGTTGAGAGTTCGAGGTTGGCTTTTTTTTGCTCTTTTTTTTTGC
TCTTTTTTTTGTGTTTTTTGGGTCCCAAGTAATATCAGTGAGGCGTACGC
GTGGGTGTTGACGGCGAGCTTGTGCAAGTTCGTCTAGGCAGCTGTCGATC
CGCGTGGGGAATTAATTATTGTGGTTTGTAGGAAGCTTTTGAGGCCGGGT
GAGTGGGTCGAAGTGGGTTGTGTTGGCGTGAGGTTTTCGTGGTAAGGGGG
GTAGGTGCACATACCTACCCTCTGGTGAAAACAAACGCTCGTTCGGTTCC
GGCACTGTGCTTTTTCTACTGAAGGGGTGGGGGGCGCTCTTTGGTGCTAC
GGCCATGCAGGACATCGAGCACGCTCCCTCTCCACGGCGAATGTTGAGAA
ATGAGTGCAGGGCCAACGGGTTCGCATCTTCGTCGTTCTTGACTTTTGGT
GCAGAGTTCACGCGAAGGTGCCCCTTTGGGGTGGTGATGAGCACCCTTTC
TACCTGATGCTATCTGACCCCTCTAGAAGGGAGATTCCATGTGACAAAGC
AGCAACCGCTTTTCGTGGTACATATTTAGTCGTTGACTGGATTGGCTTTG
TCTCCCGTGAACAATTTTCTAAACCACCGTTAATCCTGTAAACGTATGTA
TGTCTCCCGCTTTGTGTCGAGATGTGGACCCGTAGTACATACGATATCTA
TCTAGGGTTTACGGGGATACATGTGTTGAGGGTTACATCGGTGTGTTGTT
TTCGACGAGCCCCCGGGGCGAAGTTGAAGGCAATCGGTGGTGATCGAGAA
AAATCAAAACAAGCTCACTGCTGCCGTTCTGACCAATAAAACACAAGGCT
CGCCCCGCACTCTGTCTCTTGTTGCCTTTTAGGCTCTAAGCACCTCGTTC
CAGGTGCGCGTGCTCTCCCTCGTCTCATGAAGTTCAAACACAGCATCATT
GATGTCAAGTTCGTAATCCTCGCTTTCCCGTTTTTTCTGAATTATTTTTT
TAACCTTTGCGCGACAGGTTCGACCCTCTCTTCATCGAGGACCCGATGAA
CCTGAGCAACAACGTCGGCCGCAACTGCTTCAGGGTGTACCAGATCCAGA
GGGCGTGGAGCGATGCACACGCGTCGCTCACGCGCGCGCTGGACGACGAG
TCGCAGCTCCGGTCCAGCCCTTACCGCTTGCTGAGGTGTATCATATCCGA
TCCCGAACCCGCCCCAGACAGCTGACGGGGGGGGTCCGCCCGGTAGCTGA
CGGGGTCGGCTGCCTTGGCTGGGCTGGCTCACGGTGGCGTTGTTGGATTT
GTCGCGATTGTCACCAGATCATACATGCCTGGTAGTTGGTTGCCTTTGGA
ACGGACTCCGCGGTGGCTTTGCCAGAGGTTTGGGGGCGGGCCGCCTGCCT
GCTGCTCCAGACTCCAGACTGCTTTGGTAGCTGGAGAAGGAGGATTGCTG
AGTGGCCGAAGTTTTGGTTGGATGTGGTGGGCACTCTTTCGTGTTCCCGG
GAGCGAGTACTGGTGGCGGTTTGTGGTTTGTGGCTGGGCGGTGGTCGGAC
TGTCGCTTGCTGTATTATTGTGTGTGTGTGTGTGTGTATTTACGCCTCTC
GCGAGAGTAAAGAGACGAGTATGGTCTTAACTTGTGCCGTGCACGCAGGC
CTGCAGGCCTTGCACTGCCTAAGATCACGACGCCTGGTGGCCGATTCGGC
GACAGAGCGGTGGATTTGTGCGCACACAAGCTCTTGCTTAAACATCGATC
CGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7429:3757..8961+

>mRNA_L-elsbetiae_contig7429.16316.1 ID=mRNA_L-elsbetiae_contig7429.16316.1|Name=mRNA_L-elsbetiae_contig7429.16316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig7429:3757..8961+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCTGCCTCGCGTGTTGGTGGATGTGAGCTTCGAGGGCCAGGGGCA
CAACGGACAGGCGGCGAACCAGCTGGTGAAGGACTTGGTGGACGGGTTTC
CGGCTTTGAGGCCCCTGGCGCTCTTGCTCAAGCAGATGGGGCTGCCTCGC
GTGTTGGTGGATGTGAGCTTCGAGGGCCAGGGGCACAACGGACAGGCGGC
GAACCAGCTGGTGAAGGACTTGGTGGACGGGTTTCCGGCTTTGAGGCCCC
TGGCGCTCTTGCTCAAGCAGTTCATGATGGAGAAGGGACTGTGCGTCAGC
TACACCGGAGGGCTGTCGTCCTACGCGCTCACTCTTATGGTCGCTAGTTC
ATGATGGAGAAGGGACTGTGCGTCAGCTACACCGGAGGGCTGTCGTCCTA
CGCGCTCACTCTTATGGTCGCTAGATACCTCCAAGAACAAACCAGCCAGA
TGGACTCGGGGTCGCTGCTGCTGGGGTTCCTCGACTTCTACGGGAACCAC
TTCGACCCCCGTCTCACCGGCATAAGCGTCGGGCGCAGCCGCTACTTCTC
GCGGAGCGCCCCGCTGCCCCCCGTGCCCGCTCCGCCCCAGGTGGCGCCGG
TTCCGGGGGCCCCGAGTGCGGCGCGGTTGTTTTACGGCCAGATACCTCCA
AGAACAAACCAGCCAGATGGACTCGGGGTCGCTGCTGCTGGGGTTCCTCG
ACTTCTACGGGAACCACTTCGACCCCCGTCTCACCGGCATAAGCGTCGGG
CGCAGCCGCTACTTCTCGCGGAGCGCCCCGCTGCCCCCCGTGCCCGCTCC
GCCCCAGGTGGCGCCGGTTCCGGGGGCCCCGAGTGCGGCGCGGTTGTTTT
ACGGCCAGAGAGGCCGTCCCCCGTCTTTTCAGGGCGGGCTGGGAGGAGCG
GCACCTCCAGGGGCCCCGCCGGTCGCGGGGATCCCTGGCTGGGGTGACAT
GATGCGCATGCCTTATCGAGAGGCCGTCCCCCGTCTTTTCAGGGCGGGCT
GGGAGGAGCGGCACCTCCAGGGGCCCCGCCGGTCGCGGGGATCCCTGGCT
GGGGTGACATGATGCGCATGCCTTATCGGTTCGACCCTCTCTTCATCGAG
GACCCGATGAACCTGAGCAACAACGTCGGCCGCAACTGCTTCAGGGTGTA
CCAGATCCAGAGGGCGTGGAGCGATGCACACGCGTCGCTCACGCGCGCGC
TGGACGACGAGTCGCAGCTCCGGTCCAGCCCTTACCGCTTGCTGAGGTGT
ATCATATCCGATCCCGAACCCGCCCCAGACAGCTGAGTTCGACCCTCTCT
TCATCGAGGACCCGATGAACCTGAGCAACAACGTCGGCCGCAACTGCTTC
AGGGTGTACCAGATCCAGAGGGCGTGGAGCGATGCACACGCGTCGCTCAC
GCGCGCGCTGGACGACGAGTCGCAGCTCCGGTCCAGCCCTTACCGCTTGC
TGAGGTGTATCATATCCGATCCCGAACCCGCCCCAGACAGCTGA
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