mRNA_L-elsbetiae_contig7415.16297.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7415.16297.1
Unique NamemRNA_L-elsbetiae_contig7415.16297.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7415.16297.1 vs. uniprot
Match: A0A6H5JXW8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW8_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.090e-45
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    1 VARAMAAEGWKDSNGNPLSVPDDHSKDEWASPKLKSLLSSLDLEGAAVSLRRELVTVFKGDEDAFYSDLQSRCHRWLKDVRGYQTHFKSNEKQSGGADAEKNENGQCVNAIHPFEFMGGRLATML 375
            VARAMA   W+D NGNPLSVP+DHSKDE AS  LKSLL  LDLEGAA SL+ EL   FKGDE AFY+DLQ RC  WLK+VRG  T FK NE++SGGA A+  ++G  VNA HPF+FM G L TML
Sbjct:   92 VARAMATPTWRDGNGNPLSVPNDHSKDELASEHLKSLLKRLDLEGAAKSLQEELRGKFKGDEGAFYADLQLRCFNWLKEVRGKHTKFKENEQRSGGAGADATQDGGFVNARHPFQFMRGSLPTML 216
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BLAST of mRNA_L-elsbetiae_contig7415.16297.1 vs. uniprot
Match: A0A6H5JRU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU1_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 8.880e-44
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    1 VARAMAAEGWKDSNGNPLSVPDDHSKDEWASPKLKSLLSSLDLEGAAVSLRRELVTVFKGDEDAFYSDLQSRCHRWLKDVRGYQTHFKSNEKQSGGADAEKNENGQCVNAIHPFEFMGGRLATML 375
            VARAMA   W+D NGNPLSVP+DHSKDE AS  LKSLL  LDLEGAA SL+ EL   FKGDE AFY+DLQ RC  WLK+VRG  T FK NE++SGGA A+  ++G  VNA HPF+FM G L TML
Sbjct:  455 VARAMATPTWRDGNGNPLSVPNDHSKDELASEHLKSLLKRLDLEGAAKSLQEELRGKFKGDEGAFYADLQLRCFNWLKEVRGKHTKFKENEQRSGGAGADATQDGGFVNARHPFQFMRGSLPTML 579
[Close]
BLAST of mRNA_L-elsbetiae_contig7415.16297.1 vs. uniprot
Match: A0A6H5KYJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.380e-40
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 1 
Query:    1 VARAMAAEGWKDSNGNPLSVPDDHSKDEWASPKLKSLLSSLDLEGAAVSLRRELVTVFKGDEDAFYSDLQSRCHRWLKDVRGYQTHFKSNEKQSGGADAEKNENGQCVNAIHPFEFMGGRLATML 375
            VARAMA    +D NGNPLSVPD+HS DE AS  LKSLL  LDLEGAA SL+ EL   FKGD+ AFY+DLQ RC  WLK+VRG  T F  NE++SGGA A+  ++G  VNA +PF+FM G L  ML
Sbjct:   92 VARAMATPTCRDGNGNPLSVPDEHSNDELASEHLKSLLKRLDLEGAAKSLQEELRGKFKGDDGAFYADLQLRCFNWLKEVRGKHTKFGENEQRSGGAGADATQDGGFVNAHNPFQFMRGALPAML 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7415.16297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXW8_9PHAE1.090e-4566.40Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU1_9PHAE8.880e-4466.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYJ0_9PHAE2.380e-4061.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7415contigL-elsbetiae_contig7415:6726..7712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size377
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7415.16297.1prot_L-elsbetiae_contig7415.16297.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7415 6738..7712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.4643974-UTR-L-elsbetiae_contig7415:6725..67371622816826.4643974-UTR-L-elsbetiae_contig7415:6725..6737Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7415 6726..6737 +
1691683843.134206-UTR-L-elsbetiae_contig7415:6725..67371691683843.134206-UTR-L-elsbetiae_contig7415:6725..6737Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7415 6726..6737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816826.4770627-CDS-L-elsbetiae_contig7415:6737..69801622816826.4770627-CDS-L-elsbetiae_contig7415:6737..6980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7415 6738..6980 +
1691683843.149856-CDS-L-elsbetiae_contig7415:6737..69801691683843.149856-CDS-L-elsbetiae_contig7415:6737..6980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7415 6738..6980 +
1622816826.4893622-CDS-L-elsbetiae_contig7415:7592..77121622816826.4893622-CDS-L-elsbetiae_contig7415:7592..7712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7415 7593..7712 +
1691683843.160747-CDS-L-elsbetiae_contig7415:7592..77121691683843.160747-CDS-L-elsbetiae_contig7415:7592..7712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7415 7593..7712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7415.16297.1

>prot_L-elsbetiae_contig7415.16297.1 ID=prot_L-elsbetiae_contig7415.16297.1|Name=mRNA_L-elsbetiae_contig7415.16297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MAAEGWKDSNGNPLSVPDDHSKDEWASPKLKSLLSSLDLEGAAVSLRREL
VTVFKGDEDAFYSDLQSRCHRWLKDVRGYQTHFKSNEKQSGGADAEKNEN
GQCVNAIHPFEFMGGRLATML
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mRNA from alignment at L-elsbetiae_contig7415:6726..7712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7415.16297.1 ID=mRNA_L-elsbetiae_contig7415.16297.1|Name=mRNA_L-elsbetiae_contig7415.16297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=987bp|location=Sequence derived from alignment at L-elsbetiae_contig7415:6726..7712+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGCTCGGGCGATGGCAGCTGAGGGGTGGAAAGACAGCAATGGCAACCC
CCTTTCTGTTCCAGACGACCATTCGAAGGACGAGTGGGCGTCCCCGAAGC
TGAAGTCCCTCCTGAGTAGCCTGGACCTGGAGGGGGCGGCTGTATCGCTG
CGGAGGGAGCTCGTCACGGTTTTCAAGGGCGATGAGGACGCCTTCTACTC
GGACCTGCAATCCCGTTGCCACCGGTGGCTCAAGGACGTGAGGGGGTACC
AGACGGTGAGTGTTAAAGTGTTGAAGTGAGAAGTTCGTCGTGGAAACACA
GCCTTGTTCGTAATCGGAGGGGTTCCTGATGTGTGAAAGTGAAGTCGTCG
ATGCGAAGAATGGAATAGTGGGCGGGGCTGGAACTTCCTCCGATTGTTTC
TGTCTTCACGTGGTCAACATGGAACCTCGCATCACCAGCCGAGACGGAAA
TGTGAAATGAATGTTGACGTCGATGTCGTCGCATATGGATTGCCTCGCGT
TCTCGTTATCTGCGGCGTGTGGTAATTACTGTTTTGTAGACCTGCGTTTA
TCTGTCTTTTTTTCTTTTGTTGGTTGTGGTGTTTACAACTTTGCCCCTTC
AAATTCAACGGGGTTCAGTTCTCGTGCAAGTTCTTGTTTGGCGGTGGCGT
GCGGAACTTTCATGCTGCCATGCAGAGAATCTATCTGTCCCGCAGGTTTG
ATAATTGTTCGTTATCCGTGCCGCTTGTGTTTTTTGGCCGTCGACTACTA
CGTTTCGTCCTGATCGAGGGCCACTTCCTGTGACAACTAAACCACCCGCC
AAGTCGCCTGGCCTGACATCCTCCGTATTTTGTCGCACTTCGACCCGTGC
TTGCGTCGGCATGTCAGCATTTCAAGTCGAACGAGAAACAAAGTGGTGGG
GCCGATGCGGAAAAAAATGAAAACGGGCAGTGCGTCAACGCCATCCATCC
GTTCGAGTTTATGGGGGGCAGGTTGGCGACGATGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7415:6726..7712+

>mRNA_L-elsbetiae_contig7415.16297.1 ID=mRNA_L-elsbetiae_contig7415.16297.1|Name=mRNA_L-elsbetiae_contig7415.16297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig7415:6726..7712+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGCTGAGGGGTGGAAAGACAGCAATGGCAACCCCCTTTCTGTTCC
AGACGACCATTCGAAGGACGAGTGGGCGTCCCCGAAGCTGAAGTCCCTCC
TGAGTAGCCTGGACCTGGAGGGGGCGGCTGTATCGCTGCGGAGGGAGCTC
GTCACGGTTTTCAAGGGCGATGAGGACGCCTTCTACTCGGACCTGCAATC
CCGTTGCCACCGGTGGCTCAAGGACGTGAGGGGGTACCAGACGATGGCAG
CTGAGGGGTGGAAAGACAGCAATGGCAACCCCCTTTCTGTTCCAGACGAC
CATTCGAAGGACGAGTGGGCGTCCCCGAAGCTGAAGTCCCTCCTGAGTAG
CCTGGACCTGGAGGGGGCGGCTGTATCGCTGCGGAGGGAGCTCGTCACGG
TTTTCAAGGGCGATGAGGACGCCTTCTACTCGGACCTGCAATCCCGTTGC
CACCGGTGGCTCAAGGACGTGAGGGGGTACCAGACGCATTTCAAGTCGAA
CGAGAAACAAAGTGGTGGGGCCGATGCGGAAAAAAATGAAAACGGGCAGT
GCGTCAACGCCATCCATCCGTTCGAGTTTATGGGGGGCAGGTTGGCGACG
ATGCTCCATTTCAAGTCGAACGAGAAACAAAGTGGTGGGGCCGATGCGGA
AAAAAATGAAAACGGGCAGTGCGTCAACGCCATCCATCCGTTCGAGTTTA
TGGGGGGCAGGTTGGCGACGATGCTC
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