mRNA_L-elsbetiae_contig7399.16278.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7399.16278.1
Unique NamemRNA_L-elsbetiae_contig7399.16278.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE)

HSP 1 Score: 446 bits (1146), Expect = 5.480e-153
Identity = 231/285 (81.05%), Postives = 243/285 (85.26%), Query Frame = 3 
Query:    3 SSMTFLPLLALLVAANTAVGFIAPSLHVGSM---------QRAVSSVRCRVTGKA-GLRGGVGRRSVGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEW 827
            SS+TFLPL AL   A TAVGFIAPSLHV            Q ++   RCRV G   G R    RRS GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTD+IIEELLGASVGEVF  DGEEAFRSVESQVLDQVHS+VK CVATGGGIVSE KNWGK+QTGMVVWLDM+PKDIFERLS DPE+VAKRPLL+GDDPQGKLE L+E RKP YAQADVTVQL PEDGVDD+TYNVVN +LEFIDSNPPKWQKWKEKAN AGIEW
Sbjct:    9 SSVTFLPLFALCFVAKTAVGFIAPSLHVAPSAATPLKWVHQHSIPRTRCRVAGDTVGFRERRMRRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMKPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEKANAAGIEW 293
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BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 3.490e-141
Identity = 203/223 (91.03%), Postives = 211/223 (94.62%), Query Frame = 3 
Query:  162 RRSVGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEWA 830
            RRS GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTD+IIEELLGASVGEVF  DGEE FRSVESQVLDQVHS+VK CVATGGGIVSE KNWGK+QTGMVVWLDMEPKDIFERLS DPE+VAKRPLL+GDDPQGKLE L+E RKP YAQADVTVQL PEDGVDD+TYNVVNT+LEFIDSNPPKWQKWKEKAN AGIEWA
Sbjct:    2 RRSAGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWA 224
[Close]
BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA)

HSP 1 Score: 261 bits (666), Expect = 2.220e-81
Identity = 128/214 (59.81%), Postives = 165/214 (77.10%), Query Frame = 3 
Query:  204 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQA------DVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEW 827
            +RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD+IIE+L+ A V +VF   GEE FR +E++VL+++HS+VK  VATGGGIV EK+NWGKLQTG+VVWLDM   DI +RLS++ E+V+KR LL G D   KL+A+ + RK +Y QA      DV V ++P+D VD V  + V+ L +FIDSNPPKWQ+WK+ A  +GI W
Sbjct:   18 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINW 231
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BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: A0A7S1Z366_TRICV (Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z366_TRICV)

HSP 1 Score: 205 bits (521), Expect = 1.380e-58
Identity = 104/218 (47.71%), Postives = 143/218 (65.60%), Query Frame = 3 
Query:  174 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEW 827
            G  M+++P      A  LG RL+G+N++F+GMMG+GKS V   +A  MG Y FLDTDSIIE+  G ++ E+F  +GEE FR VE Q+LD VH++V+  V+TGGGIV   +NW KLQTG+VVWLD++P+ I +R+  D      RPLL  DDP  KL+ L+  R+  YAQAD+ +++  +   D V   V+  L  FID NPP W+K K KA   G++W
Sbjct:  112 GEGMKIDP------ARLLGPRLQGSNLYFIGMMGSGKSAVGDIVARRMGTYNFLDTDSIIEKATGMTIPEIFEAEGEEGFRQVEGQILDSVHAYVRCVVSTGGGIVCRLQNWAKLQTGLVVWLDVDPEVIIKRIEGD----ENRPLLQTDDPLKKLKDLLGEREERYAQADLRIEVTEDMDEDAVANMVIKELHYFIDENPPAWKKAKAKAQADGLDW 319
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BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: A0A6U3Q8M5_9STRA (Shikimate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8M5_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.450e-58
Identity = 104/219 (47.49%), Postives = 143/219 (65.30%), Query Frame = 3 
Query:  174 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPED-GVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEW 827
            G  M ++P      A  LG RL+G+N++FVGMMG+GKS V  A+A  MG Y FLDTD+IIE +  A++ E+F  +GE+ FR +ESQVLD VH+ V+  V+TGGGIV +  NW KLQ+G+V+W+D+ P  I+ R+    +    RPLL  D+P   LE L+E RKP Y+QADV +++  E   ++DV   VV  L  FID NPP W+  K KA   G++W
Sbjct:   85 GEGMTIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDAVARRMGSYNFLDTDTIIESVTNATITEIFAQEGEDTFRDIESQVLDSVHAHVRCVVSTGGGIVKKLSNWAKLQSGVVIWIDVPPSVIYNRIKDKDD----RPLLQNDNPLETLEKLLEERKPRYSQADVRIEVNDESMSIEDVASKVVQDLHNFIDENPPAWKIAKAKAQAEGLDW 293
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BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: A0A7R9ZGS2_9STRA (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA)

HSP 1 Score: 202 bits (514), Expect = 7.000e-58
Identity = 102/218 (46.79%), Postives = 141/218 (64.68%), Query Frame = 3 
Query:  174 GLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEW 827
            G  M+++P      A  LG RL+G+N++FVGMMG+GKS V   +A  MG Y FLDTD IIE+    S+ E+F  +GEE FR  E+QVLD VH++V+  ++TGGG+V    NW KLQTG+V+WLD++P+ I +R+  D      RPLL  DDP  KL+ L+E R+  Y+QADV +++  +   + V   VV  L  FID NPP W+K K KA   G++W
Sbjct:   87 GEGMKIDP------ARLLGPRLQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGD----TNRPLLQADDPLQKLKDLLEERREKYSQADVRIEVTEDMDENAVADLVVKELHNFIDENPPAWKKAKAKAQAEGLDW 294
[Close]
BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: A0A7R9UH62_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH62_9STRA)

HSP 1 Score: 201 bits (510), Expect = 7.540e-58
Identity = 100/204 (49.02%), Postives = 133/204 (65.20%), Query Frame = 3 
Query:  174 GLSMEV-EPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPK 782
            GL  +V E   +  +   L SRL GT+++FVGMMGTGKST  R LA  +  Y FLDTD++IE   G     +F  +GEE FR++ES V+DQ  ++ + C+ATGGG V   +NWGK+QTG+VVWL MEP++I ER S + E+V KRPLL G D   KL  +++ RK  Y  ADV VQL+P D V++V   V   +  F+D NPPK
Sbjct:   38 GLRADVQEEKAVEDEFTRLASRLYGTSIYFVGMMGTGKSTTGRELAKKLPGYSFLDTDTVIEAYAGQDCSAIFEKEGEEGFRNIESMVMDQACAYRRLCIATGGGAVLRNQNWGKMQTGIVVWLQMEPEEIAERFSGNDEEVEKRPLLQGGDAVDKLREILDKRKEKYEVADVHVQLSPGDSVEEVVERVCGKIHRFMDENPPK 241
[Close]
BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: A0A1Z5KE71_FISSO (Shikimate kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE71_FISSO)

HSP 1 Score: 200 bits (509), Expect = 2.120e-57
Identity = 100/209 (47.85%), Postives = 139/209 (66.51%), Query Frame = 3 
Query:  204 LRLQAAELGS-RLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEW 827
            L++  A L S RL G N++F+GMMG+GK++V  A+A  MG Y FLDTD+IIE+    ++ E+F  +GEE FR VE+Q+LD VH +V+  ++TGGGIV+  +NW KLQTG+V+WLD+EP+ I +R+     Q   RPLL  +DP  KL+AL+E RKP Y  AD+ V++  E     V   V+  L  FID NPP W+  K KA   G++W
Sbjct:   70 LKIDPARLLSPRLNGANLYFIGMMGSGKTSVGEAVARRMGSYTFLDTDAIIEKATKMTIPEIFEAEGEEGFRQVEAQILDSVHPYVRCVISTGGGIVTRMENWSKLQTGLVIWLDVEPEVIIKRI-----QGTDRPLLQTEDPLKKLKALLEERKPKYKNADIRVKVTEEMDTAAVADQVIYDLHHFIDDNPPAWKLAKAKAQAEGLDW 273
[Close]
BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: A0A448ZQW6_9STRA (Shikimate kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQW6_9STRA)

HSP 1 Score: 200 bits (509), Expect = 4.430e-57
Identity = 100/201 (49.75%), Postives = 136/201 (67.66%), Query Frame = 3 
Query:  225 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEW 827
            LG RL+G+N++ VGMMG+GKS+V   LA  MG Y FLDTD IIE+    ++ E+F ++GEE FR VESQVLD VH++V+  V+TGGG+V + KNWGKLQTG+VVWLD+ P+ I +R+  + +    RPLL   DP   L+ L+E R P Y QAD+ V++  +   D V   +V  L  FID NPP W+  K+KA   G++W
Sbjct:  102 LGPRLQGSNLYLVGMMGSGKSSVGDKLARRMGSYKFLDTDEIIEKATKLTINEIFESEGEEGFRDVESQVLDTVHAYVRCVVSTGGGLVCKPKNWGKLQTGIVVWLDVAPEVILKRVEGNED----RPLLKTKDPLQTLKDLLEERTPKYNQADLRVEITEDMDEDAVASRIVLDLHNFIDDNPPAWKLAKQKAQEEGLDW 298
[Close]
BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Match: B7GAC8_PHATC (Shikimate kinase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAC8_PHATC)

HSP 1 Score: 194 bits (492), Expect = 7.270e-55
Identity = 96/201 (47.76%), Postives = 130/201 (64.68%), Query Frame = 3 
Query:  225 LGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFVKTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRPLLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLEFIDSNPPKWQKWKEKANNAGIEW 827
            LG RL G+NV+FVG+MG+GKS V   LA  MG Y FLDTD IIE   G ++ E+F  +GEE FR+VE+QVLD VH +V+  ++TGGGIV + +NW KLQTG+VVWLD EP+ I  R+         RPLL  D+P  KL+ L+  R+  Y+QAD+ +++  +   + V    +  L  FID NPP W+  K KA   G++W
Sbjct:   80 LGPRLNGSNVYFVGIMGSGKSAVGDILARRMGTYNFLDTDEIIERATGMTIPEIFKAEGEEGFRTVEAQVLDSVHPYVRCIISTGGGIVIKLENWSKLQTGLVVWLDCEPEVIMRRIEG-----TDRPLLQTDNPLQKLKDLLAEREDKYSQADIRIKVTEDMDTEHVADLAIRELHNFIDENPPAWKLAKSKAQAEGLDW 275
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7399.16278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIK7_9PHAE5.480e-15381.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTH1_ECTSI3.490e-14191.03Shikimate Kinase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A835ZK89_9STRA2.220e-8159.81Shikimate kinase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7S1Z366_TRICV1.380e-5847.71Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1... [more]
A0A6U3Q8M5_9STRA2.450e-5847.49Shikimate kinase n=1 Tax=Ditylum brightwellii TaxI... [more]
A0A7R9ZGS2_9STRA7.000e-5846.79Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=... [more]
A0A7R9UH62_9STRA7.540e-5849.02Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5KE71_FISSO2.120e-5747.85Shikimate kinase n=2 Tax=Fistulifera solaris TaxID... [more]
A0A448ZQW6_9STRA4.430e-5749.75Shikimate kinase n=1 Tax=Pseudo-nitzschia multistr... [more]
B7GAC8_PHATC7.270e-5547.76Shikimate kinase n=2 Tax=Phaeodactylum tricornutum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7399contigL-elsbetiae_contig7399:3565..8225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.1
Seed ortholog evalue5.2e-113
Seed eggNOG ortholog2880.D8LTH1
Preferred nameSK2
KEGG rclassRC00002,RC00078
KEGG koko:K00891
KEGG ReactionR02412
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categorysignal peptide
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615
EggNOG free text desc.shikimate metabolic process
EggNOG OGs2QTKR@2759,COG0703@1
EC2.7.1.71
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionShikimate Kinase
Ec32 orthologEc-02_005600.1
Exons5
Model size1436
Cds size825
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816824.052174-UTR-L-elsbetiae_contig7399:3564..35721622816824.052174-UTR-L-elsbetiae_contig7399:3564..3572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7399 3565..3572 +
1691683841.0662653-UTR-L-elsbetiae_contig7399:3564..35721691683841.0662653-UTR-L-elsbetiae_contig7399:3564..3572Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7399 3565..3572 +
1622816824.1188748-UTR-L-elsbetiae_contig7399:7622..82251622816824.1188748-UTR-L-elsbetiae_contig7399:7622..8225Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7399 7623..8225 +
1691683841.1342938-UTR-L-elsbetiae_contig7399:7622..82251691683841.1342938-UTR-L-elsbetiae_contig7399:7622..8225Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7399 7623..8225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816824.0656276-CDS-L-elsbetiae_contig7399:3572..38061622816824.0656276-CDS-L-elsbetiae_contig7399:3572..3806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 3573..3806 +
1691683841.0869317-CDS-L-elsbetiae_contig7399:3572..38061691683841.0869317-CDS-L-elsbetiae_contig7399:3572..3806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 3573..3806 +
1622816824.076283-CDS-L-elsbetiae_contig7399:5099..53001622816824.076283-CDS-L-elsbetiae_contig7399:5099..5300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 5100..5300 +
1691683841.0971532-CDS-L-elsbetiae_contig7399:5099..53001691683841.0971532-CDS-L-elsbetiae_contig7399:5099..5300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 5100..5300 +
1622816824.087517-CDS-L-elsbetiae_contig7399:5851..59591622816824.087517-CDS-L-elsbetiae_contig7399:5851..5959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 5852..5959 +
1691683841.1057847-CDS-L-elsbetiae_contig7399:5851..59591691683841.1057847-CDS-L-elsbetiae_contig7399:5851..5959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 5852..5959 +
1622816824.0978472-CDS-L-elsbetiae_contig7399:6618..67471622816824.0978472-CDS-L-elsbetiae_contig7399:6618..6747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 6619..6747 +
1691683841.1154206-CDS-L-elsbetiae_contig7399:6618..67471691683841.1154206-CDS-L-elsbetiae_contig7399:6618..6747Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 6619..6747 +
1622816824.1085606-CDS-L-elsbetiae_contig7399:7469..76221622816824.1085606-CDS-L-elsbetiae_contig7399:7469..7622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 7470..7622 +
1691683841.1260724-CDS-L-elsbetiae_contig7399:7469..76221691683841.1260724-CDS-L-elsbetiae_contig7399:7469..7622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7399 7470..7622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7399.16278.1prot_L-elsbetiae_contig7399.16278.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7399 3573..7622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7399.16278.1

>prot_L-elsbetiae_contig7399.16278.1 ID=prot_L-elsbetiae_contig7399.16278.1|Name=mRNA_L-elsbetiae_contig7399.16278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=275bp
MTFLPLLALLVAANTAVGFIAPSLHVGSMQRAVSSVRCRVTGKAGLRGGV
GRRSVGLSMEVEPHVLRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALA
DVMGRYIFLDTDSIIEELLGASVGEVFTTDGEEAFRSVESQVLDQVHSFV
KTCVATGGGIVSEKKNWGKLQTGMVVWLDMEPKDIFERLSADPEQVAKRP
LLSGDDPQGKLEALMEARKPLYAQADVTVQLAPEDGVDDVTYNVVNTLLE
FIDSNPPKWQKWKEKANNAGIEWA*
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mRNA from alignment at L-elsbetiae_contig7399:3565..8225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7399.16278.1 ID=mRNA_L-elsbetiae_contig7399.16278.1|Name=mRNA_L-elsbetiae_contig7399.16278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4661bp|location=Sequence derived from alignment at L-elsbetiae_contig7399:3565..8225+ (Laminarionema elsbetiae ELsaHSoW15)
TGTCATCCATGACCTTCCTCCCCCTTTTGGCCCTCTTGGTGGCGGCGAAC
ACAGCCGTCGGGTTCATCGCGCCTTCGCTCCATGTAGGCTCGATGCAGCG
CGCGGTCTCCAGTGTGAGATGTCGCGTGACGGGCAAGGCTGGACTCCGCG
GAGGCGTGGGGAGGAGAAGCGTGGGACTGAGCATGGAAGTGGAGCCGCAT
GTACTCAGGCTGCAGGCCGCTGAGCTTGGATCGAGGCTCAGGGTAAGAAG
CGAGCCGTAAGAGGCGAGGTGTTAACGCGTGAAGAAGATGACATGATCTC
GGACAACCCAACGTCACTGCTTTTTCTCAGTATGTACTGCTGACAACAGT
ACACAGAGTACATACGTCGGTGCGGGTTAGGGTTAGGGTTGTGTTGGGTG
GGATGGGTCGGTCACGTGTGTGTCTTCTGGTTCTGAGTGTGAACGATCTG
CACAACATCGTGTTTGCAAGAAGAGCTACTATCAGTGTTAAACCCAACCT
CGCTGCTTGGCTCTGCTGCCGCGCTTGAGAGAGCTGAATACATTCAGCGC
GCTCGCAGAGCCAGACTTGATTGTGGGAGCTACTGCTGCCGTGCTCCTGG
CCTGAACAACCCCACCGTTCGTTATGGTTTGAGTTTCGGTGTTTTTTTCG
CCTCTCTCCTTCTCTGTGAGCGTGTGCGCGAGGAAGGTGTGTTGCGCGTA
CGGTCGCTCGCGTGTGCAACTACTACACAGAGTACTGCTGTGGTGGGGGT
GATGCAGCCGGCAAAAATGACGGCACGCCGGTGCTCTCATCAAAAGAGGC
AAAGCAGCCGGGCAGCCCCTATTACTAACCCTTTGACCCTGTGGAACATG
GAACGTGGAACTCAGGATGTGCATGTTTCTCCCAACATTCAATCACCCGT
TTTGTTCCAGCTCTGCTCTGATTTCGGCCTAAAAAACAGGCCGTCTACAA
CGAAGTTACGCCGTAAAACAGTAGTCTACACATGAAGCTTATATTCCTGC
ATCAGAGCCATTTGTTTGGTTCAGCCAGTGATTGTTTATGGACAGCACGG
CGAACTCGACATGCACGTGTCGCTGGCCAGTTGGGCCAGAACAGCCTCCT
GAGTTGTTTCTGCCTGTATCAAACCCTCCAAGTTACCAGTCACCTAGTGT
GCGTGTGTTTGTTTTGGCTGATGCCAGCAGGTGAACCACCTGGCAACCTC
TTCGTAACCCGGATCAAGCCTTACCTCGTACATGTAGTCTACGCATGTAC
TTGATATGCAAGCACCTTCAAATCAGTTGAAACTACGAACCCAAAACGGT
ACACTTTTCTAATCGTCCTCACCTCTGCTGTACGCTTCGGGGGCATGGTA
GACAAGTCGCGGCGACAAGGTTTCCACGCATAAATACACCTACATATGTA
CAACTCCGTAGATACGCACCTTACGTTTTGGAGCATACCGATTCTCTTGC
GCGCAAACCGGAAAATAACTGTAACTTAGCTCACAATTATCTCTACCGCT
TCGCTCCTCTACTCGGGTTTTGGCTGTTTTTTCAGGGAACGAACGTGTTT
TTCGTGGGCATGATGGGCACCGGCAAGTCCACGGTCGCGCGCGCCCTCGC
AGATGTGATGGGCAGGTACATCTTTTTGGACACCGACTCCATCATCGAGG
AGCTCCTAGGGGCGAGCGTTGGCGAAGTGTTTACCACCGACGGGGAAGAG
GCGTTCCGCAGCGTGGAGAGCCAGGTGTTAGACCAGGTGCGGCTAAGAAA
CCGCGAGAGGGTGCTGTAGGGGTGTACAGCAGTAGTACTGCCCGGCGCAC
TCGTTAACTTCTTGGCTTCGAAGGCAAAGAGCGGAGGATTGGGGGGGCAG
CATCTATATTTTGTGTGCTTGTCGTTGCGTTGGTTGCAGGACGTTGGTGA
AGCAACTGCGTCGAGATGGGCCGCTTCTCCTTCCCCTGGACAACGTTAAG
TGCCCTCTCCCTTTCGTGCCGTCCCTCTTCTTTTTGCGTTGTCGGATTTG
TGACGTGTTTGCCCCCCTTTACGACTTCTGACTCTTCACCTTACTGCGGT
TTGGGGTCAGTGCCTTACCTCTTAGTTCGCATTCGCTTGCTCAACATGAG
CTTTGTAGTGAACCAAAGCACGCTTCACCAAAGGCACCACCGGTTTACGA
ACGGGGGGCGGGATTGAGTAGAGTGCGCTGACGTTGTGGTTCAGTACGGT
CGACATCTACATATCTCAACTGGTCCCATCCGGTCGCAAGTGTCCTCCCC
AACAACCTGTATTCGTTGTCGCTGTTGCATCGAACAGGTCCACTCGTTCG
TCAAGACTTGCGTTGCCACGGGCGGCGGGATCGTGTCGGAGAAAAAAAAC
TGGGGGAAACTGCAGACCGGCATGGTGGTGTGGCTCGACATGGAGGTCAG
AACAAAGAAAGAGGGGTGATTTAAGGACCTCCGAGAGGTGGCGTTGCTGG
ATAGGTAATCGCGGGAAGAAAACGAGCCGTGTCAGCGTCGAGGAATCTAG
AAATTACCGTAGTTGGGGGCATTTTTGTGAGGACCAACTTTCAAAAGGGG
TCACGTGATTGCTCCACGGCTACCTACGGGGCCTATGTATGCCCCCAAGT
GGTGGTACTGCGATGACGACCTATTTGTCTCGTTCTCGAAAACGTTCCGG
AGAACGTTCCCGAGAAGCATCGGTCGGTTTTTCCCCTTGTCGCACCCCTC
GATGTTGGTTGAGCGGTAAAGCTTGGAAGATCGGTCCTCCAACGTTTTAC
ATTTGAATGTGGCTCATGTTTGTGCCCTCAGAACTCGTATGCACCCTTTC
ATACCCCGCCCCCCCTGTATATTTTATAGCAAGGACTTCGGCATCGCCAC
TCCAATTTCCAGCCGGCTTGTGTACTTGTACCTTTCGAATTTGTTTTTTC
AAAAAGTGTTTCCCGGCACCGATATGTGTTCTGTTTGCGACGCATCTCTC
ATCTCCGGTGAGTCGTTCTCTGGGAAATGTGGGAGTCCGTCTCTCGTTAT
ATTTCACGCCCTTTTTATCGTACGTTCATGTACCGCCCCGACCGTCCTCT
CCAGCCCAAGGATATCTTCGAACGGTTGTCCGCAGACCCGGAGCAAGTGG
CCAAGAGGCCGCTCTTGTCGGGAGATGATCCTCAGGGAAAGCTGGAGGCG
CTCATGGAGGCACGGAAGCCGCTGTACGCGCAGGTAAGGGCTTGGCATAT
TGTAGGCAGCCGCGGAAAACTGCAGGATGTGCGGTATGTACACGGCGTGC
AGAGGAAGGGTAGGGTATGTGGAGAAGAGAGCTTTGAGATTACTTGCTTG
TGCTCGAGGAAAGGTCGGGTCACACACAAGCGGAGAGAAGAAATTATGAA
TCCAGTGGAAAAATAAACGAGAACATGCCGACGTGTCGAAGCGGTGGGTG
GTGCCTGAGAGGGGTGAGTCTGCCTTCTTTTGCCTTGGCTGCTTGTTGGA
AGAGACGTCTTCCTTCCAGTCTTTGGAGGGAAATTGTTAAGGGGCGTGGG
CACGGACGGCTGCGCAGCGTTCAAGCGGAGCAACATGGTCGTGGGTGTCA
CTCGGCAGGCACGGAGAATTAATTCAGCACCCTCTGTACAACAGAGGCCT
GATTGCTGTCTTTGGCAGTATTTGCACGGCGTGGCGTGGCGTGGCGTGGC
GTGAAAGGTCGGCTGATGGAGCATAAATATACACACACCGCCACGGTTGT
TGTTTGATGCGGCTTATCAGGCCGGGGGCCAACCATGGCTGAGGAGCAAG
CCGTATCGTTCTCGTGTAAATTATAAATTACCTTCGGACACAGGTATGCC
TTTAACTTTGGGTATTTAGTTAACATGCTGGCGCTTAATATCTCAACTCC
CCTTCTGTTCAATGCTCCGACTGTCTTTCCCCCCGCCGCTTTTTGTTTGT
GGCAGGCCGATGTAACCGTGCAGTTAGCACCAGAAGACGGCGTGGACGAC
GTTACGTACAACGTAGTCAACACCCTCCTCGAGTTTATCGACAGTAATCC
TCCCAAGTGGCAGAAGTGGAAAGAGAAGGCCAACAATGCCGGCATCGAGT
GGGCGTGATTTTATTGGTCTCCTCTGTTTTTGTCTGTGGTAATTGTGTTC
TCGCGCATGTCATGCTGCTGGATGGGTAGCATCACGGGTGACTCTTTTTA
ATGTACTGCTGCGGTCTCACATCCGTTTTGGGCAATGCTGCCTCTTGTTA
CAAAAAAAGTATTTAGATGACAACATTACGGCGTCATGACGGGCATCTAC
CCGCCGGAATACTTGTTGGCCGACCTCGCAAATATTTGCAGAGGAGATGT
TGAACTCGTCTGATATTTTAGGTGTTTCTCTGCTCGTTTCGCTAATTATT
ACGTCACTGTTGTAATGCCGATTGAAACCCATATCGAGCCCTTGCTCTAG
TGTGGGTTAGGTTCCATCTTTGATTCATTGTTTATTTTTTAAAAAGCGGA
AGCTCTCAATTCCTGATGATGGATGAAAGCTTAACTTTCACTATGTCGCA
GGGAATGAAGGTCGACCGACCAAGAACCGATAACCGCCTGTGGTGCGGCC
ACACGACTGCTATTCCTGTGCCAGTACAGTATCGGTCGCCCCCGCCCCGA
AAACCTTCTAGCAGGCAGGATCACGGGTTCGATTCCCGACGGGAGCGACT
TTTTCGTAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7399:3565..8225+

>mRNA_L-elsbetiae_contig7399.16278.1 ID=mRNA_L-elsbetiae_contig7399.16278.1|Name=mRNA_L-elsbetiae_contig7399.16278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1650bp|location=Sequence derived from alignment at L-elsbetiae_contig7399:3565..8225+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCTTCCTCCCCCTTTTGGCCCTCTTGGTGGCGGCGAACACAGCCGT
CGGGTTCATCGCGCCTTCGCTCCATGTAGGCTCGATGCAGCGCGCGGTCT
CCAGTGTGAGATGTCGCGTGACGGGCAAGGCTGGACTCCGCGGAGGCGTG
GGGAGGAGAAGCGTGGGACTGAGCATGGAAGTGGAGCCGCATGTACTCAG
GCTGCAGGCCGCTGAGCTTGGATCGAGGCTCAGGATGACCTTCCTCCCCC
TTTTGGCCCTCTTGGTGGCGGCGAACACAGCCGTCGGGTTCATCGCGCCT
TCGCTCCATGTAGGCTCGATGCAGCGCGCGGTCTCCAGTGTGAGATGTCG
CGTGACGGGCAAGGCTGGACTCCGCGGAGGCGTGGGGAGGAGAAGCGTGG
GACTGAGCATGGAAGTGGAGCCGCATGTACTCAGGCTGCAGGCCGCTGAG
CTTGGATCGAGGCTCAGGGGAACGAACGTGTTTTTCGTGGGCATGATGGG
CACCGGCAAGTCCACGGTCGCGCGCGCCCTCGCAGATGTGATGGGCAGGT
ACATCTTTTTGGACACCGACTCCATCATCGAGGAGCTCCTAGGGGCGAGC
GTTGGCGAAGTGTTTACCACCGACGGGGAAGAGGCGTTCCGCAGCGTGGA
GAGCCAGGTGTTAGACCAGGGAACGAACGTGTTTTTCGTGGGCATGATGG
GCACCGGCAAGTCCACGGTCGCGCGCGCCCTCGCAGATGTGATGGGCAGG
TACATCTTTTTGGACACCGACTCCATCATCGAGGAGCTCCTAGGGGCGAG
CGTTGGCGAAGTGTTTACCACCGACGGGGAAGAGGCGTTCCGCAGCGTGG
AGAGCCAGGTGTTAGACCAGGTCCACTCGTTCGTCAAGACTTGCGTTGCC
ACGGGCGGCGGGATCGTGTCGGAGAAAAAAAACTGGGGGAAACTGCAGAC
CGGCATGGTGGTGTGGCTCGACATGGAGGTCCACTCGTTCGTCAAGACTT
GCGTTGCCACGGGCGGCGGGATCGTGTCGGAGAAAAAAAACTGGGGGAAA
CTGCAGACCGGCATGGTGGTGTGGCTCGACATGGAGCCCAAGGATATCTT
CGAACGGTTGTCCGCAGACCCGGAGCAAGTGGCCAAGAGGCCGCTCTTGT
CGGGAGATGATCCTCAGGGAAAGCTGGAGGCGCTCATGGAGGCACGGAAG
CCGCTGTACGCGCAGCCCAAGGATATCTTCGAACGGTTGTCCGCAGACCC
GGAGCAAGTGGCCAAGAGGCCGCTCTTGTCGGGAGATGATCCTCAGGGAA
AGCTGGAGGCGCTCATGGAGGCACGGAAGCCGCTGTACGCGCAGGCCGAT
GTAACCGTGCAGTTAGCACCAGAAGACGGCGTGGACGACGTTACGTACAA
CGTAGTCAACACCCTCCTCGAGTTTATCGACAGTAATCCTCCCAAGTGGC
AGAAGTGGAAAGAGAAGGCCAACAATGCCGGCATCGAGTGGGCGTGAGCC
GATGTAACCGTGCAGTTAGCACCAGAAGACGGCGTGGACGACGTTACGTA
CAACGTAGTCAACACCCTCCTCGAGTTTATCGACAGTAATCCTCCCAAGT
GGCAGAAGTGGAAAGAGAAGGCCAACAATGCCGGCATCGAGTGGGCGTGA
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