mRNA_L-elsbetiae_contig7387.16264.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7387.16264.1
Unique NamemRNA_L-elsbetiae_contig7387.16264.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7387.16264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7387contigL-elsbetiae_contig7387:7224..7889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000540.1
Exons1
Model size667
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.59771-UTR-L-elsbetiae_contig7387:7223..74121622816822.59771-UTR-L-elsbetiae_contig7387:7223..7412Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7387 7224..7412 +
1691683840.061557-UTR-L-elsbetiae_contig7387:7223..74121691683840.061557-UTR-L-elsbetiae_contig7387:7223..7412Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7387 7224..7412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.6129005-CDS-L-elsbetiae_contig7387:7412..78891622816822.6129005-CDS-L-elsbetiae_contig7387:7412..7889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7387 7413..7889 +
1691683840.0713706-CDS-L-elsbetiae_contig7387:7412..78891691683840.0713706-CDS-L-elsbetiae_contig7387:7412..7889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7387 7413..7889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7387.16264.1prot_L-elsbetiae_contig7387.16264.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7387 7413..7889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7387.16264.1

>prot_L-elsbetiae_contig7387.16264.1 ID=prot_L-elsbetiae_contig7387.16264.1|Name=mRNA_L-elsbetiae_contig7387.16264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MMAAAGRESHRSSDKNLLSPPLAAEELNPDDDGTRSTTDESIIAAAGGGG
GAAGIGVAGMEADVGNLDALFEMTSAARNPDCDGTRSTTDESIAAAAGSG
AAGTGAAGPEADVGDPDALVEATPEQPQSRKAKKKLSKARAKKSKVPEDL
AADSTSSTT
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mRNA from alignment at L-elsbetiae_contig7387:7224..7889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7387.16264.1 ID=mRNA_L-elsbetiae_contig7387.16264.1|Name=mRNA_L-elsbetiae_contig7387.16264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig7387:7224..7889+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAGCCACACGGCCCCCTCAGGAACCCCTCGGCCACGGAAACGCACCCC
ACACACGCAGTCTTGCTAGTTTAGCGAGAGCGCAGCGAGAGCAGGCTCAC
CACAACAGGAGCCAGCGGCGGGCGGCGTCTGATCTCGTTCACCACCGCCT
TCACGAAGAAGGCACAGGAGCTAAACCAGAAGGGGGAGGATGATGGCTGC
GGCGGGGCGAGAATCGCACCGATCGTCGGACAAAAACCTCCTGTCCCCTC
CGCTGGCAGCAGAAGAACTGAACCCCGACGACGATGGGACGAGATCGACC
ACCGACGAGTCCATCATCGCCGCCGCCGGCGGTGGCGGCGGGGCGGCTGG
GATTGGAGTCGCGGGGATGGAGGCCGACGTTGGAAACCTGGACGCCCTTT
TTGAGATGACCTCAGCAGCACGAAACCCCGACTGCGACGGGACGAGATCG
ACCACCGACGAGTCCATCGCCGCCGCCGCCGGCAGCGGGGCGGCTGGGAC
TGGAGCCGCGGGGCCGGAGGCCGACGTTGGCGACCCGGACGCCCTTGTTG
AGGCAACCCCAGAACAGCCGCAGAGTCGGAAGGCGAAGAAAAAACTCTCA
AAAGCGCGCGCCAAAAAGAGCAAAGTGCCGGAAGACCTCGCCGCCGACTC
GACTTCTTCTACTACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7387:7224..7889+

>mRNA_L-elsbetiae_contig7387.16264.1 ID=mRNA_L-elsbetiae_contig7387.16264.1|Name=mRNA_L-elsbetiae_contig7387.16264.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig7387:7224..7889+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGCTGCGGCGGGGCGAGAATCGCACCGATCGTCGGACAAAAACCT
CCTGTCCCCTCCGCTGGCAGCAGAAGAACTGAACCCCGACGACGATGGGA
CGAGATCGACCACCGACGAGTCCATCATCGCCGCCGCCGGCGGTGGCGGC
GGGGCGGCTGGGATTGGAGTCGCGGGGATGGAGGCCGACGTTGGAAACCT
GGACGCCCTTTTTGAGATGACCTCAGCAGCACGAAACCCCGACTGCGACG
GGACGAGATCGACCACCGACGAGTCCATCGCCGCCGCCGCCGGCAGCGGG
GCGGCTGGGACTGGAGCCGCGGGGCCGGAGGCCGACGTTGGCGACCCGGA
CGCCCTTGTTGAGGCAACCCCAGAACAGCCGCAGAGTCGGAAGGCGAAGA
AAAAACTCTCAAAAGCGCGCGCCAAAAAGAGCAAAGTGCCGGAAGACCTC
GCCGCCGACTCGACTTCTTCTACTACTATGATGGCTGCGGCGGGGCGAGA
ATCGCACCGATCGTCGGACAAAAACCTCCTGTCCCCTCCGCTGGCAGCAG
AAGAACTGAACCCCGACGACGATGGGACGAGATCGACCACCGACGAGTCC
ATCATCGCCGCCGCCGGCGGTGGCGGCGGGGCGGCTGGGATTGGAGTCGC
GGGGATGGAGGCCGACGTTGGAAACCTGGACGCCCTTTTTGAGATGACCT
CAGCAGCACGAAACCCCGACTGCGACGGGACGAGATCGACCACCGACGAG
TCCATCGCCGCCGCCGCCGGCAGCGGGGCGGCTGGGACTGGAGCCGCGGG
GCCGGAGGCCGACGTTGGCGACCCGGACGCCCTTGTTGAGGCAACCCCAG
AACAGCCGCAGAGTCGGAAGGCGAAGAAAAAACTCTCAAAAGCGCGCGCC
AAAAAGAGCAAAGTGCCGGAAGACCTCGCCGCCGACTCGACTTCTTCTAC
TACT
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