mRNA_L-elsbetiae_contig7386.16261.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 215 bits (548), Expect = 1.290e-65 Identity = 114/150 (76.00%), Postives = 118/150 (78.67%), Query Frame = 2 Query: 209 AGSDYA--LPGALFSDGKIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAEFWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADILG 640 AGSDY LPGA FSDGKIFDPLGLSDGA PG+IK EAEIKHGRVAML V+VAEFW FSLLGMAFIEYNTI P VT E GLKEDY PGDLGFDPL LKP EA L M+TKE NNGRLAMIGIAGML QEL+NPADILG Sbjct: 43 AGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 210 bits (534), Expect = 4.190e-63 Identity = 117/189 (61.90%), Postives = 127/189 (67.20%), Query Frame = 2 Query: 176 PRGTRILVT*GAGSDYA--LPGALFSDGKIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAE----------------------------FWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADILG 640 P + + AGSDY LPGA F DGKIFDPL LSDGAEPGEIKL EAEIKHGRVAML V+VAE FW FSLLGMAFIEYNTITK +P VT E GL+++Y+PGDLGFDPL LKPK +A L MQTKE NNGRLAMIGIAGMLVQEL+NPADILG Sbjct: 33 PASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 201 bits (512), Expect = 8.090e-60 Identity = 116/189 (61.38%), Postives = 122/189 (64.55%), Query Frame = 2 Query: 176 PRGTRILVT*GAGSDYA--LPGALFSDGKIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAE----------------------------FWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADILG 640 P + + AGSDY LPGA F DGKIFDPL LSDGA+P +IK EAEIKHGRVAML VLVAE FWVFSLLGMAFIEYNTI P VT E GLKEDY PGDLGFDPL LKP+ EA L M+TKE NNGRLAMIGIAGMLVQELINPADILG Sbjct: 32 PASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 190 bits (483), Expect = 2.010e-55 Identity = 110/177 (62.15%), Postives = 114/177 (64.41%), Query Frame = 2 Query: 209 AGSDYA--LPGALFSDGKIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAE----------------------------FWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADIL 637 AGSDY LPGA FSDGKIFDPL LSDGA PG+IK EAEIKHGRVAML +LVAE FW FSLLGMAFIEYNTI P VT E GLKEDY PGDLGFDPL LKP EA L M+TKE NNGRLAMIGIAGML QEL+N DIL Sbjct: 43 AGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: A0A6H5JAU1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE) HSP 1 Score: 187 bits (476), Expect = 2.520e-55 Identity = 97/133 (72.93%), Postives = 103/133 (77.44%), Query Frame = 2 Query: 254 KIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAEFWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADILG 640 KI DPLGLSDGA PG+IK E EIKHGRVAML V+VAEFWVFSLLGMAFIEYNTI P +T E GLKEDY PGDLGFDPL LKP A L M+TKE NNGRLAMIGIAGM+ QEL+NPADILG Sbjct: 23 KILDPLGLSDGAAPGDIKKWRETEIKHGRVAMLASLGVIVAEFWVFSLLGMAFIEYNTIITAFDTPSALTGEGGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADILG 155
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 181 bits (460), Expect = 2.300e-52 Identity = 105/181 (58.01%), Postives = 114/181 (62.98%), Query Frame = 2 Query: 194 LVT*GAGSDYALPGALFSDGKIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAE----------------------------FWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADILG 640 +V+ A D+ P AL +IFDPLGLSDGA PG+IK EAEIKHGRVAML V+VAE FW FSLLGMAF+EYNTI P VT E GLKEDY PGDLGFDPL LKP EA L M+TKE NNGRLAMIGIAGML QEL+NPADILG Sbjct: 18 VVSPVAAFDHRCPNALVP--QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 177 bits (450), Expect = 1.410e-50 Identity = 103/189 (54.50%), Postives = 119/189 (62.96%), Query Frame = 2 Query: 176 PRGTRILVT*GAGSDY--ALPGALFSDGKIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAE----------------------------FWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADILG 640 P + + AG+DY LPGA +GKIFD L L+DGA+PGEIKL EAEIKHGRVAML V+VAE FW +SLLGMAFIEYNTI K +P VT E GL+++Y+PGDLGFDP +KPK +A L MQ KE NNGRLAMIGI GMLVQEL+N DILG Sbjct: 33 PASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 181 bits (459), Expect = 7.490e-50 Identity = 104/173 (60.12%), Postives = 110/173 (63.58%), Query Frame = 2 Query: 218 DYALPGALFSDGKIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAE----------------------------FWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADILG 640 D+ P AL +IFDPLGLSDGA PG+IK EAEIKHGRVAML V+VAE FW FSLLGMAFIEYNTI P VT E GLKEDY PGDLGFDPL LKP EA L M+TKE NNGRLAMIGIAGML QEL+NPADILG Sbjct: 222 DHRCPNALVP--QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 172 bits (435), Expect = 7.070e-49 Identity = 95/160 (59.38%), Postives = 106/160 (66.25%), Query Frame = 2 Query: 254 KIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAML----VLVAE----------------------------FWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADIL 637 KIFDPLGL+DGAE G+IKL EAEIKHGRVAML VLVAE FW FSLL +A IEYNTITK +P VT E GL+++Y+PGDLGFDPL LKP + L TMQTKE NNGRLAMIGIAG LVQEL+NP +IL Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Match: A0A6H5JYI8_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE) HSP 1 Score: 155 bits (391), Expect = 1.340e-42 Identity = 90/146 (61.64%), Postives = 95/146 (65.07%), Query Frame = 2 Query: 209 AGSDYA--LPGALFSDGKIFDPLGLSDGAEPGEIKLCWEAEIKHGRVAMLVLVAEFWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGFDPLGLKPKTEADLVTMQTKEPNNGRLAMIGIAGMLVQELINPADILG 640 AGSDY LPGA FSDGKIFDPLGLSDGA PG+IK EAEIKHGRVAML + LG+ E EDY PGDLGFDPL LKP EA L M+TKE NNGRLAMIGIAGML QEL+NPADILG Sbjct: 43 AGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAML---------ASLGVIVAE---------------------EDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 158 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7386.16261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7386.16261.1 >prot_L-elsbetiae_contig7386.16261.1 ID=prot_L-elsbetiae_contig7386.16261.1|Name=mRNA_L-elsbetiae_contig7386.16261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp MLVLVAEFWVFSLLGMAFIEYNTITKTCVKPGEVTCESGLKEDYTPGDLGback to top mRNA from alignment at L-elsbetiae_contig7386:657..3498+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7386.16261.1 ID=mRNA_L-elsbetiae_contig7386.16261.1|Name=mRNA_L-elsbetiae_contig7386.16261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2842bp|location=Sequence derived from alignment at L-elsbetiae_contig7386:657..3498+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7386:657..3498+ >mRNA_L-elsbetiae_contig7386.16261.1 ID=mRNA_L-elsbetiae_contig7386.16261.1|Name=mRNA_L-elsbetiae_contig7386.16261.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig7386:657..3498+ (Laminarionema elsbetiae ELsaHSoW15)back to top |