mRNA_L-elsbetiae_contig7384.16259.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7384.16259.1
Unique NamemRNA_L-elsbetiae_contig7384.16259.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: A0A6H5KL58_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL58_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.300e-9
Identity = 45/105 (42.86%), Postives = 49/105 (46.67%), Query Frame = 1 
Query:    1 SPNQQCFASAITACARALDSRSALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNEMTDRG 315
            SPN QC+ASAITACARA D RS                                        R ME AYGV+         IS LSRAGRAREAK LLNEM++RG
Sbjct:  171 SPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXISGLSRAGRAREAKALLNEMSERG 275
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.340e-8
Identity = 43/105 (40.95%), Postives = 47/105 (44.76%), Query Frame = 1 
Query:    1 SPNQQCFASAITACARALDSRSALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNEMTDRG 315
            SPN QC+ASAITACARA D RS                                        R ME AYGV+            LSRAGRAREAK LLNEM++RG
Sbjct:  359 SPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXXXGLSRAGRAREAKALLNEMSERG 463
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: A0A7S2VFJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VFJ2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.580e-6
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:   31 ITACARALDSRSALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGL--LNEMTDRG 315
            + AC+RA   R  L   + ++   VPPN+    +++  C +  +  +A+ LL+ ME  YGV P++V YN+A+SA  RA   + A  L  L E +DRG
Sbjct:  190 VDACSRARPVRLDLAFQI-LKDSPVPPNVYTFGSLMSVCAREGSVGDAVKLLKSMEEEYGVAPNSVVYNTAVSACGRADPPQPAMALKLLQEASDRG 285
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: A0A445MCY4_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A445MCY4_ENSVE)

HSP 1 Score: 58.5 bits (140), Expect = 7.100e-6
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:   49 ALDSRS--ALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNEM 303
            A+ SR+  AL+L   M   G+ P+ V   A+L AC  G   D+ L++   M   YGV P    Y   + A SRAGR +EA+G+L  M
Sbjct:  382 AMSSRADLALQLFASMICHGLRPDGVAFLALLSACCHGGLVDQGLMIFEAMSKVYGVVPHKEHYTCMMDAFSRAGRLKEAEGILRGM 468
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: A0A427A8E1_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427A8E1_ENSVE)

HSP 1 Score: 57.8 bits (138), Expect = 9.260e-6
Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   49 ALDSRS--ALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNEM 303
            A+ SR+  AL+L   M   G+ P+ V    +L AC  G   D+ L++   M   YGV P    Y   + A SRAGR +EA+G+L  M
Sbjct:  188 AMSSRADLALQLFASMICHGLRPDGVAFLGLLSACCHGGLVDQGLMIFEAMSKVYGVVPHKEHYTCMMDAFSRAGRLKEAEGILRRM 274
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: A0A5P1E664_ASPOF (DYW_deaminase domain-containing protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E664_ASPOF)

HSP 1 Score: 57.4 bits (137), Expect = 1.300e-5
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:   61 RSALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNEM 303
            + AL L  +M + G+ P+ V + AVL AC      +E L LL RM+  Y V P    Y+  +  L RAGR +EA GL+  +
Sbjct:   94 KEALGLFYEMESIGINPDFVTLTAVLSACSHSGLVNEGLKLLDRMQIDYLVEPTIEHYDCIVDLLGRAGRLKEALGLIQRI 174
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: A0A804JKT7_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JKT7_MUSAM)

HSP 1 Score: 57.0 bits (136), Expect = 2.130e-5
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1 
Query:   49 ALDSRS--ALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNEM 303
            A+ SRS  AL+L   M   G+ P+ V   A+L AC      D+ L++ + M   YGV P    Y   + A SRAGR +EA+G+L  M
Sbjct:  336 AMTSRSDLALQLFASMICHGLRPDGVAFLALLSACCHAGLLDQGLMIFKAMSKVYGVVPKKEHYTCMMDAFSRAGRLKEAEGILCSM 422
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: A0A444DP47_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444DP47_ENSVE)

HSP 1 Score: 57.0 bits (136), Expect = 2.270e-5
Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   49 ALDSRS--ALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNEM 303
            A+ SR+  AL+L   M   G+ P+ V    +L AC  G   D+ L++   M   YGV P    Y   + A SRAGR +EA+G+L  M
Sbjct:  395 AMSSRADLALQLFASMICHGLRPDGVAFLGLLSACCHGGLVDQGLMIFEAMSKVYGVVPHKEHYTCMMDAFSRAGRLKEAEGILRGM 481
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: UPI00098E4EB9 (pentatricopeptide repeat-containing protein At5g66520-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E4EB9)

HSP 1 Score: 56.6 bits (135), Expect = 3.090e-5
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:   61 RSALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNEM 303
            + AL L  +M++ G+ P+ V + AVL AC      +E L LL RM+  Y V P    Y   +  L RAGR +EA GL+  +
Sbjct:  313 KEALGLFYEMQSIGINPDSVTLTAVLSACSHSGLVNEGLKLLDRMQIDYLVEPTIEHYGCIVDLLGRAGRLKEALGLIQRI 393
[Close]
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Match: A0A7S3BEI2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BEI2_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 4.250e-5
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:   25 SAITACARALDSRSALRLMMDMRADGVPPNLVVVNAVLDACGKGDAPDEALLLLRRMESAY--GVRPDNVSYNSAISALSRAGRAREAKGLLNEM 303
            SAI+A A+      A RL+  MRA GV P++V +N V+DA  +     +A+  L R       GV+ D VSY   ISALS+ GR   A  LL+ M
Sbjct:    2 SAISAYAKTGQPEPAGRLLKRMRAQGVVPDVVSINGVIDAHARAGMLQQAMGWLNRTIRGDFDGVQADVVSYTIVISALSKRGRLAAASKLLDRM 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7384.16259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KL58_9PHAE3.300e-942.86SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LB51_ECTSI6.340e-840.95SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2VFJ2_9STRA1.580e-636.08Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A445MCY4_ENSVE7.100e-639.08Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A427A8E1_ENSVE9.260e-637.93Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A5P1E664_ASPOF1.300e-538.27DYW_deaminase domain-containing protein n=3 Tax=As... [more]
A0A804JKT7_MUSAM2.130e-539.08(wild Malaysian banana) hypothetical protein n=1 T... [more]
A0A444DP47_ENSVE2.270e-537.93Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
UPI00098E4EB93.090e-538.27pentatricopeptide repeat-containing protein At5g66... [more]
A0A7S3BEI2_9EUKA4.250e-541.05Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7384contigL-elsbetiae_contig7384:464..9602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.8
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog15368.BRADI4G41840.1
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.DYW family of nucleic acid deaminases
EggNOG OGs37N6G@33090,3GAGY@35493,3I92U@38820,3KMV7@4447,KOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons8
Model size966
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7384.16259.1prot_L-elsbetiae_contig7384.16259.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7384 464..9602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.1876411-CDS-L-elsbetiae_contig7384:463..5201622816822.1876411-CDS-L-elsbetiae_contig7384:463..520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 464..520 -
1691683839.7178419-CDS-L-elsbetiae_contig7384:463..5201691683839.7178419-CDS-L-elsbetiae_contig7384:463..520Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 464..520 -
1622816822.1984417-CDS-L-elsbetiae_contig7384:1369..15311622816822.1984417-CDS-L-elsbetiae_contig7384:1369..1531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 1370..1531 -
1691683839.7316344-CDS-L-elsbetiae_contig7384:1369..15311691683839.7316344-CDS-L-elsbetiae_contig7384:1369..1531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 1370..1531 -
1622816822.2094004-CDS-L-elsbetiae_contig7384:3078..31971622816822.2094004-CDS-L-elsbetiae_contig7384:3078..3197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 3079..3197 -
1691683839.7410667-CDS-L-elsbetiae_contig7384:3078..31971691683839.7410667-CDS-L-elsbetiae_contig7384:3078..3197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 3079..3197 -
1622816822.2195275-CDS-L-elsbetiae_contig7384:3863..39841622816822.2195275-CDS-L-elsbetiae_contig7384:3863..3984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 3864..3984 -
1691683839.753213-CDS-L-elsbetiae_contig7384:3863..39841691683839.753213-CDS-L-elsbetiae_contig7384:3863..3984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 3864..3984 -
1622816822.2293732-CDS-L-elsbetiae_contig7384:5091..52441622816822.2293732-CDS-L-elsbetiae_contig7384:5091..5244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 5092..5244 -
1691683839.7625377-CDS-L-elsbetiae_contig7384:5091..52441691683839.7625377-CDS-L-elsbetiae_contig7384:5091..5244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 5092..5244 -
1622816822.2411702-CDS-L-elsbetiae_contig7384:5931..60011622816822.2411702-CDS-L-elsbetiae_contig7384:5931..6001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 5932..6001 -
1691683839.7723293-CDS-L-elsbetiae_contig7384:5931..60011691683839.7723293-CDS-L-elsbetiae_contig7384:5931..6001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 5932..6001 -
1622816822.2547855-CDS-L-elsbetiae_contig7384:7570..77011622816822.2547855-CDS-L-elsbetiae_contig7384:7570..7701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 7571..7701 -
1691683839.7828054-CDS-L-elsbetiae_contig7384:7570..77011691683839.7828054-CDS-L-elsbetiae_contig7384:7570..7701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 7571..7701 -
1622816822.2653728-CDS-L-elsbetiae_contig7384:9449..96021622816822.2653728-CDS-L-elsbetiae_contig7384:9449..9602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 9450..9602 -
1691683839.8005745-CDS-L-elsbetiae_contig7384:9449..96021691683839.8005745-CDS-L-elsbetiae_contig7384:9449..9602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7384 9450..9602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7384.16259.1

>prot_L-elsbetiae_contig7384.16259.1 ID=prot_L-elsbetiae_contig7384.16259.1|Name=mRNA_L-elsbetiae_contig7384.16259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=322bp
SPNQQCFASAITACARALDSRSALRLMMDMRADGVPPNLVVVNAVLDACG
KGDAPDEALLLLRRMESAYGVRPDNVSYNSAISALSRAGRAREAKGLLNE
MTDRGLKPDKVSFAAAMQGFATAGDPRNAASLSDEMRRSGIEMDVVSYGT
AVSACAKAGDIQGALKLIKEMKEAGVEANTVVYNSALDACGRAGKPKVAA
KLLRKMGEAGVVPNATSYTGAIAACSRAGDGDKALEWLNIMSDEGIAPEA
ICYNYAMAACGRSGGDKQAEWLLKEMRDNGVTPNRISYSAAMFALGKAGR
LPDVLGLLEEMHREGVEADEVT
back to top

mRNA from alignment at L-elsbetiae_contig7384:464..9602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7384.16259.1 ID=mRNA_L-elsbetiae_contig7384.16259.1|Name=mRNA_L-elsbetiae_contig7384.16259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9139bp|location=Sequence derived from alignment at L-elsbetiae_contig7384:464..9602- (Laminarionema elsbetiae ELsaHSoW15)
AGCCCAAACCAACAGTGCTTTGCGTCGGCGATCACGGCCTGCGCTAGGGC
CCTCGACTCCCGTTCGGCGCTGCGGCTGATGATGGACATGCGCGCGGACG
GAGTGCCGCCGAATCTCGTGGTGGTCAACGCCGTCCTCGACGCCTGCGGA
AAGGTACCTAAAATAAATAAGTGCGATTTCTTTTTTCCTTTTTTTCCTTT
TTTTAAGTCGGACATATGTACGTTGGTAAATACTACTTCGACTTCGTTGT
TGACGAGGGTGGGGAGTGTTGAACCCTGCTCGCGATAAAACAAAACAGGC
AGGCACCGCAGGAGGAGGGGGGTCCCCCCCCCCCCCCTGTGTGACCCCGG
TTGGGTCGTCTAGCTAGTCGTAGTGGAGGATGGGGGCCAGTGGGGCAGAC
GACAAATATGCCACTGATGGGCGAAAAAAAAAAATGTACGTAGATATTTA
GACGCTGACGTTCAACGCCTGCGGAAATGTACAGCAGTGTGTACTGTTCG
CGATAAAGCATAACGGTCAGGCACCGTAGGAAGGGGTCCACCACCCCCCA
CCCCCCCCGTGTGTGTGATCACGGTTGGGTCGTCCAGCTAGTCGTAGTGG
ACGATGGGGGCCAGTTGGGCAGACGACGAATAAGCCAAGGATGGGAGGAA
ACAATGTTGTGGTTGTACTTTATGTAGTGGGTTGCGTTTTTTCCTTGGTT
GGACGTTACGTACAATAGACAGCTGACGTTTAGACATGCTTATAATCTGA
TCAATAATACATCTAGTAGCTGAAGTAGTAGATCGAGCTACACATACGTA
CGTTCAGACATGCTTAAAATCTAAATAAATCTTGTAGCTGATAATAGTAG
ATCGAGCTACAAATATGTACCAACATACCATTCATCGCATTTGTGAATGA
AAAATCACGTTCTCTGTCTCTTGTGGTTTTTGCTCTTGCGTGTTAAAAAA
AAATAAACAATGAGTCAAAGATGGAACCTACCCCACACTTGTGCAAGGAC
TCGGTATGGGGTTCAAACGATATTCCATACAGACAGTGACGTAATATTTG
GCGAAGCGAGCAGAGAAACAAGCCTAAAATTATCAGAAGAGTTCAAGATC
TATCTCCCCTGCAAAGATGGTTTGCTCTTTGCGTGTTTTTGGTTGTTCCC
ACTCTGTCGATTCTGGAAGACCTTGTCTTGTCGGCAGCTGCCGTCACGTA
CATGCGGGGCCAGTGGGGCAGACGCCAAATATGCCAATGATGGGAGAAAA
AGAAGAAGAAAAAAACGTACAGCATATATAGCATACAATAGCAGCATAGC
AGCACGCTCCTTGTGTCGATAACCATTTCCCATTGTTTCCGTTCCCCTTT
TTCGAACTAAAACGGTACATAGATGGTGTAGGCAAGGAGGGTGGTGGTGC
ACCGCCGCGCGCTGACACTTGTTACTTGCTCCCTCTTGGTGTAGAATTTT
ACTAGTGCGTGACATCATTTCCCTCCTTCTTGCGTGTTCTCCTTGTTAAT
ACTACTTACTTCGAAGATTATTATTTATTTCTTCATCTCTTTTCTTCTCT
TTCTTTCTTTTTTCTTTTTTTTTTTTCTTCATGTGCGGATACCCCCACAC
GTTTACCAGCGCTAGGCCGAGGGTCCGAGCAAATTAAGAAGCAACGCACC
AAATTTTTGGTGGCGCTGCGCAGTAACCGCAGTGCAAAAAATAAAATATG
ATTTTACCAAAAATGGAACCTAACCCACCACTAGAGACGGGAGGGACTCC
GTGGGATTCCATTCCGGCATTCCGTATTGTAGACTAAATTTAGTGACGTA
GTATTGGCCCGGCCGAGGTAGAAGCACACCGAAAATCCCCGAAGAATGAA
GTCATTCAGCGTTCCTCCCCTGCAAACCTTTCTTTCGGGACGCACCGGCA
GGGAGATGCACCTGACGAAGCGCTGTTGCTCCTCCGAAGGATGGAGAGCG
CCTACGGGGTCAGGCCGGACAACGTTTCGTACAACTCGGCGATTTCCGCG
CTCTCGCGGGCCGGTCGCGCCCGAGAGGCAAAGTGAGGACGGCGTTCTCG
TGGGGGGGGGAGGGGGGGGGGTGTAGCGTGTCCTGAGCATGATTGGTAAA
CTCGCTAGACCCTATGGGACCGACCTACTTCGCGTCTCCCCCTCCCAAGC
GGAGAAGAAGACGGAGCACGCCTGAAATCGATTTTTCGTCTTCGACACCG
GGTTTTCGGCCGCCGACACATGTGTTTTCTCATCTCAAGATGTAGATACA
TACATATCTCTACAATATGTGCATACCTTCCTCCGGAATAGACATGCGTT
GTGTGTAAGAGAAACACGGGCCCCCTCCTAAATACGCACACAAGGCTGAG
TGCATTTTCACCGTGTTTCCGATTGCCCTTGACTTGGCCGAGTTTCGCCC
GCCCCGTGCTGTTGGAATTTGAGATTCTTGTTGTTGAGAAATTGAGGTTA
TGTATGTATTGTGATTTTCAACAGAATTGCCGCAAGAAATCGCTGCACAT
CCATCTTGACGTGAGTTTCAAGAGTATGTACATACCGTATACGACACAAG
ATATCACACCCCCTGGACCGATTTTCAAACCTCGGTTACTCCGCAACGAG
TTGTGATTCTAATGCCAAACGACACGTTTTTGGGCAGCTCTTGATGAGGT
CTTTCCAACGCCGCCCTTTTCGGGACTGAAACTCTTCTCGCTGTCGAGTA
ATCGAGCTTTCGAAATCGGTCCAGGGGGTGTGTTATCTTGTGTTGTCATA
TACGGTATACGGAGTATATACTTTGTATTATACTGCTGTGGTGGGTGTGG
CATGAAGTGTTTTACCTTGTGTCCCTCTTTTCCTTGCAAGACGGAGATGG
TTGATATTGCAGTATTGTAGTGTACACACATCCAAGAGTGAAGAACGTCA
ACAACGGGGCGGCAACACACTCGCGTATTTCGTGGCAGGAGCTCTGTATT
TACTTAAAAAAAATACAAGGGACCGCCTTCGGGAAAAATTCCCGTCTATA
TAGGTAGAAAATAATAGACAGGGGTTCCGTAACCGTAGCCCTAACCCCAC
CCTAACCCCAAAACGACCCCCCATTAGCCATTTCTATACATACTTTATCC
CACATGATTTTCTTCCATACTTTGTCCCATTAGCCGTTTCCATACTTTAT
CCCATATGATTTTCTTCCATACTTTGTGCCATTAGCCGTTTCCATACTTT
GTCCCATTAGCCATTTCCATACTTCGTCCCATTAGCCATTCCCATACTTT
GTCCCATTAGCCGTTTCCATACTTTATCTATCCCATATGATTTTCTTCCA
TCTTTATCCCATTAGCCGTTTCCATACTTTATCTATCCCATATAATTTTC
TTCCATACTTTATCCCATTAGCCGTTTCCATACTTTATTTATCCCATATG
ATTTTATTCCAGTAAAGTAAAACCTGCGAAGGCTACAAAATACTAGACAT
GGGACATTTAGAAAGAATCGGCGATGTCGTGATTGCCTGTTCACCACTGC
TGTGCTCTCGTTGGCTCTCTGACTGTGGTTTCGTTGGCTCTCTGACTCAC
TTCTTTTTGACTCAAATTCCTTCTTGGCTGCTTGCTGTATTCGCACACCA
GAGGCTTGCTGAACGAGATGACCGACCGGGGCCTCAAGCCCGACAAAGTC
AGCTTCGCAGCAGCCATGCAGGTGTGGGGTCGTATAGACGGGATGTTGTA
TGTTTCGTGTTGCTGCGGTCGTGATTGAGGCCCGGCAAAGTCAGCTTCGC
CCGCAGCGATGCAGGTGTGGGGTTTTGTGGATGGGATGTTGTACGCTTCG
TGTTGTTGCGGTTGTGATTGAGGCCCGGCAAAGTCAGCTTCGCCGCAGCG
ATGCAGCAGGTGTGGGGGTTTATGGGTGTGGTGTGTGGTATGCTGCCTGT
TGTTGGCGGTTGTGTTCGTTGTCGCGGCCTTCGCTTTGAAAATATATGTA
CACATTGTACGTATGTATACAATACACCAACTTCGACCCACAAGCAGCCG
TACACTCCTACGTACCTAGCTGTTTTGTCATGAACAGCTTGCGCGGGTGG
GCAGGCCAGACTACCGTAAGCGACACAAGATACCACACCCCCTGGACCGA
GTTTTAGAGCTCCGTTACCCTGTAACGAAGAAGGTGCCAGCACCAAGCAA
CACATGTTCGGACAGCCCTCGACTAGATCTTTCCAATGCCACCTCTTTGG
GCACTGGCACTCTTCTCGCCGAGGAGGAATCGAGCTTTGAAAGTCTGTCC
AGGGGGTGTGGTATCTTGTGTCACCTACGGTAGAAGCCCACTCTCTCTCC
CTCTGTCTCCACCTGCCTGTCTCTCTGACTCTCCCCCTCTCTCCCTCTAC
TTATGTAGGGGTTCGCGACGGCGGGGGACCCTAGAAACGCCGCGTCTCTA
TCGGATGAGATGCGGAGGAGCGGCATAGAAATGGACGTGGTCAGCTACGG
CACCGCAGTAAGCGCCTGTGCAAAGGCCGGGGACATTCAGGGGGCGCTCA
AGCTCATCAAGGTGTGCAAAAAACCCTGTGAACAATCGAAGTCACGGCGA
CCTTTAATATGTTTGCCGGTTCCGGAGGCTGTTTGGAAACCTACCAAAAA
CACAGTCAGTCCGAGGTGTTTTCGTTATCGTACAGCTGGTGTCTATCGGC
CGGCAGGACATGCCAACGATTTTTTAATTAATGCTTACAAATGTCAGCAG
TCTACGCCCAGTCTGCGAAAAAGTCGTTCCATGGGAGCTGTTGGAGACAG
TCTCGTTGACAGTCCTGTTTACAGTCCGCGAAAAAGTCGTTCCAGAGGGG
ACTGCTGTAGGCATGTTAAATAACCCCCCTTTTTTTCCCGTCCGAGACAA
GTCATTTTTTTAATGTATGCATACAAATGCCAGCAGTCTACGTCCAGTCT
GCGAAAAAAGTCGTTCCGGAGGGACTGCTGTAGGCATACTACACAACCTA
CTTTTTTCCCGTCCAAAATTATACAATCATTTTTTTGTGGTGCTGTGTGT
TTACTTGGTGCATTTTTTTATTTTTTATTGTTGTGCGCGGTTTTCGTACA
CACATGCCTGGTACAATAACGCCTCTTTCCTCTCCCTATTTATGGCCTCG
GAGTGGCCTCCGTTGGCTGAAAACGGATCAAAACCCAACGGCTTGGGCAA
TCAAAACACCACAGCCGACCATCTCATCGGTGATTGGCTGCGGAATAAGC
AAAAGGAAACACCCCGAACTGACATTTTTTGTTGTTGTGTTAGGTCGCTT
TCACGGCAGCAGTCTGTCTGTCTCTGTGGGAATAGAGAAAGAAGCGCCGC
GCTTGGGGGGATCAAAACCTACCCGCCGTAATACTTGTTGGCCGACCTCG
CAAATCTTTGCAGGAGAAATGTTGAACTCTTCTGATATTTTAGGTTTGTT
TTTCTGCTTGTTTCGCCAAATATTACGTCACTCTTGTGTATGGAATCCCG
ATTGAAACCCATATCGAGTCCTTGCTCTAGTGTGGGGTAGGCTCCATCTC
TGATTCATTGATTATTTTTTATTTATTTTTAAATCACACAACCAAGCGTG
TTCGAAGCCCTTTTGACAATATTTCCGCTCGCGTGTTTTCTTCTTGGGGG
CGCACGCAATTTACACAGGAGATGAAGGAGGCCGGGGTGGAGGCCAACAC
GGTGGTGTATAACTCGGCGCTGGACGCCTGCGGCCGTGCCGGAAAGCCGA
AGGTGGCGGCGAAGCTCCTCCGGAAGATGGGGGAGGCCGGTGGGTGTGCA
TCGTGCGGCTTCCAGAATAGCAAAAAACACTCACGTCGCTTCTTCTTATT
CTTCTTCTTATTCGGTTTTTTAACCAAGTCGCACTTCCCGAACGAAGCCG
ATGGATGGTTTGGCTCTCTGACGTCCGCCTGTACCGCACCCCGGGGATGT
CCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGCGTGTGAGTGTGTGTGTGCGTGTGTGTGTGCGTGTGGGTGGG
TGTGTGGGTGTGCGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGCGTGCG
TGCGTGCGTGCGTGCGTGCGTGTCTCACTTGTTTTTAATCGCGGTGGAGC
CGGTGCCGGTGCGAGACAGTCTTGTATCTAGCGTGCGAGTAGCCCCAGAC
GCAATAAGCCAGCAGCGTATATTACAAGCTTGACCTGCCTTCCCTTCCCT
TCCCTTCCCCTCCTTTAATTGGATGGAAATATCAGTATTCATTCCCCGTT
TTCTTAAACTTACGACGTACATCGATGATACACGTTCTATATCGTGGTGT
CGTCATGCTTCTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTTTGTTCCT
GCTCTCCTGCCACGGCGGTTCTGGGGGCACGAAAAACAAAACGACGAAAG
AACAGGTGTGGTCCCGAACGCGACAAGCTACACGGGAGCCATCGCCGCCT
GCTCCAGGGCCGGGGACGGCGACAAGGCCCTCGAGTGGCTCAATATCATG
TCCGACGAGGGGATCGCTCCGGAGGTATCCACTGACTGCTGCAGCACGCG
CCGTCGTATCTGCGTAAATATATACATAGCGCAAGTGGCGTAAGATAACA
CCCGTACGTTGGATAAGACCCCCCCCCCCCAAACAACCTCTCTGGATACA
ATACTACACCGTGTGATACATACATGTATATATACATACTACACGTATTT
TGATTCAAAGTATGTATGTGACCGAAAACTAAATTACCGTGAGATCAAGT
ACAACAGGGGTGACACAAGATAGCACGCCCCTTCCACAATAGCACACCGT
CCGTCATTTATTTTCTTGAGCCCAACTATGTTACAAGTAGTTTTTTTAAG
AATGTATCCAAATAATATGCCATCACGTGTATCTATTTCTCCAGCATATC
ATCCCTTTGCGGCATTTCAACCAGAGCGTGGGTCGCGCGCGGCAGGTGTC
GGGAACGAGACGACCTGACCACGGGTGCACCCGCATGGCATGCAGTGTAG
GATGATAGATATGTATGTACGATGTTCTCGCGGTGCGGACATACCTACGG
TTGCAGGCCCGTTGTAGAGGTTTAATCAGCTCTTCCAAGAGCCCCTTGCG
GAGGGAGGGGGTCAGCAGAAAGTCGTGGGCTCTCTTCGCTTCGGCACTTT
ACTTTTCCACTCATCCATTGTACCACGGAAGAAAAGTGCTTACCTGCGGT
ATCTACTTAAATAGTGGGGAAGTACTATCGTACCGCGCCCCGTGTCGTCG
TATGCGGAGGGCACTAGGCCGTTTGCCCTCAACAGGGCGCATTATAGCAA
CGACCCTGCTGTGTGCGGTGGTAATAGGAATGGACGGCGTGTGTAGACTA
GGCTTGCGTACGCACGATTACTTACAACTGCTACAATTGTGCTTTGGGTG
TTTCGGCAATTTATAGTTGACGCTACTACCAACTGTTGCTGCGCCGCATT
CAACGCTGGTTTGGGTGTTTCGGCAATTTATAGTTGACACTACTACTAAC
TGTTGCTGCGCCGCATTCAACGCTGGTTTGGGTGTTTCGGCAATTTGTAG
TTGACACTACTGTTGCTGCGCCGCATTCAATGCTTGTTTGGGTGTTTCGG
CAATTTAGGGTTGACACTACTGTTGCTGTGCCGCATTCAATGCTTGTTTG
GGTGTTTCGGCAATTTAGGGTTGACACTACTGTTGCTGTGCCGCACTCAA
TGCTTGTTTTGGGTGTTTCGGCAATTTATAGTTGACACTACTGTTGCTGT
TCCGCATTCAATGCTTGTGGCTGAACCGCGTTGAAGAGTTAAGTCTAAAT
ATGCTTCCAAATATATCGATCTAAACCTACGGCCGATGCTTATCGAGCCG
AACAGTTGGAAGCATAGTTTACCCGGCGACAAAAAAACGAGCCGTATGTA
GACTATGTACACAGCAAGGCGATTCGTTCCAACTACGGTACGCCATGCCC
GCAGGCGCGCGCGAAGGAACGAGGGCGTTAAACCAGGAGAATCAAAAACA
GCACTACTACTGTACATACCTGAGTCTTCCCCTCCCCTCCCCCTTTCCCC
CCCCCTCCTCCCCCGCACAAGGCTATCTGCTACAACTACGCCATGGCGGC
GTGCGGTAGGTCCGGGGGCGACAAGCAGGCGGAGTGGCTGCTGAAAGAGA
TGCGCGATAACGGCGTCACGCCCAACCGCATTTCGTACAGCGCGGCCATG
TTCGCCTTGGGCAAGGCTGGTCGCTTACCGGACGTGAGTCTTAGTTTTAA
GCTCCCAAATCGACCGCGTCAGTGTTGGATTAGTATGGACTCATGGAGGT
GTACTGGATAGAGAGATCGGAACGGTCTTTAATGTCGAGACAACACACAC
ACAAACAGAGGGCGCGCGCGCTCAAAGCATAAGTACTCATGAAACTTCAG
TAGGTAAATATGTTTGTTATTTTTCTTGTGAGGGTTGATTGCCGTTCGTC
GACGAGCTGCTTAGAAGTTTCCATTATAGTGCACTATTCGATAGCATCGC
CGACGTTCGTTTCTGCCGTGCCTTGCCGCTGCTGTGAGAGATGACACCAA
TGGCGCCCGAGTTTACCCCTGCTGGTTTTATGGTTTGTTTGCACATCAAA
CCTATTTTAAACTCTATTGCGCCATGTACCAAGCAACACTGGAGAACCCG
CACTATGCAAGACACTACGGGTACTGTCCATTTTTTTTGTTGTAACTCTC
TGGCGATGTCGTTTTAGAAACTAACACCTCTCAAACCTCAACGAAGCAAG
TGTCGGGCATGGCGAGAGACGCAACTACAAACATCCCATGTGCAAGAGGG
GGGAGGGGAGAAAGTTCAAAGCACAACATTTCAGTGGGTTGACTGATACA
TACCTTGATCATTGTTTTCACAGATGAATGTCATCTTTCAGTGTTTCTAC
CCGTGTTCTCGTTTTTGGCAGTTGTACATAGATATATACATGCGGGTAAC
AGCTCTCCGCATCCATTTTAGTGTTGGGCTTCCATGAGCAATACGGCTGA
CTCACTCTGTGTTGATTTCAACCGTGTTGTTTGCTCTGGTGCACACATAT
GCATGTTTTTATCCACGTGCGCGACTCCACAGGTGCTGGGTCTGCTGGAG
GAGATGCACAGAGAGGGCGTCGAGGCAGACGAGGTAACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7384:464..9602-

>mRNA_L-elsbetiae_contig7384.16259.1 ID=mRNA_L-elsbetiae_contig7384.16259.1|Name=mRNA_L-elsbetiae_contig7384.16259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1932bp|location=Sequence derived from alignment at L-elsbetiae_contig7384:464..9602- (Laminarionema elsbetiae ELsaHSoW15)
AGCCCAAACCAACAGTGCTTTGCGTCGGCGATCACGGCCTGCGCTAGGGC
CCTCGACTCCCGTTCGGCGCTGCGGCTGATGATGGACATGCGCGCGGACG
GAGTGCCGCCGAATCTCGTGGTGGTCAACGCCGTCCTCGACGCCTGCGGA
AAGAGCCCAAACCAACAGTGCTTTGCGTCGGCGATCACGGCCTGCGCTAG
GGCCCTCGACTCCCGTTCGGCGCTGCGGCTGATGATGGACATGCGCGCGG
ACGGAGTGCCGCCGAATCTCGTGGTGGTCAACGCCGTCCTCGACGCCTGC
GGAAAGGGAGATGCACCTGACGAAGCGCTGTTGCTCCTCCGAAGGATGGA
GAGCGCCTACGGGGTCAGGCCGGACAACGTTTCGTACAACTCGGCGATTT
CCGCGCTCTCGCGGGCCGGTCGCGCCCGAGAGGCAAAGGAGATGCACCTG
ACGAAGCGCTGTTGCTCCTCCGAAGGATGGAGAGCGCCTACGGGGTCAGG
CCGGACAACGTTTCGTACAACTCGGCGATTTCCGCGCTCTCGCGGGCCGG
TCGCGCCCGAGAGGCAAAAGGCTTGCTGAACGAGATGACCGACCGGGGCC
TCAAGCCCGACAAAGTCAGCTTCGCAGCAGCCATGCAGAGGCTTGCTGAA
CGAGATGACCGACCGGGGCCTCAAGCCCGACAAAGTCAGCTTCGCAGCAG
CCATGCAGGGGTTCGCGACGGCGGGGGACCCTAGAAACGCCGCGTCTCTA
TCGGATGAGATGCGGAGGAGCGGCATAGAAATGGACGTGGTCAGCTACGG
CACCGCAGTAAGCGCCTGTGCAAAGGCCGGGGACATTCAGGGGGCGCTCA
AGCTCATCAAGGGGTTCGCGACGGCGGGGGACCCTAGAAACGCCGCGTCT
CTATCGGATGAGATGCGGAGGAGCGGCATAGAAATGGACGTGGTCAGCTA
CGGCACCGCAGTAAGCGCCTGTGCAAAGGCCGGGGACATTCAGGGGGCGC
TCAAGCTCATCAAGGAGATGAAGGAGGCCGGGGTGGAGGCCAACACGGTG
GTGTATAACTCGGCGCTGGACGCCTGCGGCCGTGCCGGAAAGCCGAAGGT
GGCGGCGAAGCTCCTCCGGAAGATGGGGGAGGCCGGAGATGAAGGAGGCC
GGGGTGGAGGCCAACACGGTGGTGTATAACTCGGCGCTGGACGCCTGCGG
CCGTGCCGGAAAGCCGAAGGTGGCGGCGAAGCTCCTCCGGAAGATGGGGG
AGGCCGGTGTGGTCCCGAACGCGACAAGCTACACGGGAGCCATCGCCGCC
TGCTCCAGGGCCGGGGACGGCGACAAGGCCCTCGAGTGGCTCAATATCAT
GTCCGACGAGGGGATCGCTCCGGAGGTGTGGTCCCGAACGCGACAAGCTA
CACGGGAGCCATCGCCGCCTGCTCCAGGGCCGGGGACGGCGACAAGGCCC
TCGAGTGGCTCAATATCATGTCCGACGAGGGGATCGCTCCGGAGGCTATC
TGCTACAACTACGCCATGGCGGCGTGCGGTAGGTCCGGGGGCGACAAGCA
GGCGGAGTGGCTGCTGAAAGAGATGCGCGATAACGGCGTCACGCCCAACC
GCATTTCGTACAGCGCGGCCATGTTCGCCTTGGGCAAGGCTGGTCGCTTA
CCGGACGCTATCTGCTACAACTACGCCATGGCGGCGTGCGGTAGGTCCGG
GGGCGACAAGCAGGCGGAGTGGCTGCTGAAAGAGATGCGCGATAACGGCG
TCACGCCCAACCGCATTTCGTACAGCGCGGCCATGTTCGCCTTGGGCAAG
GCTGGTCGCTTACCGGACGTGCTGGGTCTGCTGGAGGAGATGCACAGAGA
GGGCGTCGAGGCAGACGAGGTAACGGTGCTGGGTCTGCTGGAGGAGATGC
ACAGAGAGGGCGTCGAGGCAGACGAGGTAACG
back to top