mRNA_L-elsbetiae_contig7382.16258.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7382.16258.1
Unique NamemRNA_L-elsbetiae_contig7382.16258.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 4.520e-58
Identity = 139/288 (48.26%), Postives = 172/288 (59.72%), Query Frame = 1 
Query:  427 RRQQQVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAIEALETCRNSATALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTN-----------------------------NSH------TAGEDGRRRS------SRFHS---------TGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYDTSLR 1140
            RR+Q V +KKE A +AY S  Y  A+ELYSEA+  V  QD  T A L ANRAAAL NL RN+DA++DC +AL LKP+YPKVLLR  RLH+RL QWD AI+  ET RNS   LH+T +EA SEL+QCR S++ A+DEE R REA+A    R +                             + H      + G    RR       S + S         +GHY TLG++S+AT +E+K AYRKL L+HHPDKNQG+ AS   F+ V  AYEVLSDE +RR YD SLR
Sbjct:  137 RRRQDVMDKKERAGKAYASNRYRLAHELYSEAI-CVDPQDYYTNALLFANRAAALMNLARNKDALKDCIEALRLKPNYPKVLLRKARLHKRLSQWDLAIKDYETYRNSVGVLHSTWEEAASELDQCRLSQRRANDEERR-REAEARAYERGDYFYGSXXXXXXXXXXXXXHGLFDDXXXXXDDHDPFKFFSGGSSWSRRGRGTGGRSNYDSPPPPGPVPTSGHYTTLGIKSTATTAEVKKAYRKLALQHHPDKNQGNEASANIFKDVTAAYEVLSDEKERRTYDVSLR 422
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: A0A3N4LM38_9PEZI (TPR-like protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LM38_9PEZI)

HSP 1 Score: 108 bits (270), Expect = 2.260e-21
Identity = 78/236 (33.05%), Postives = 117/236 (49.58%), Query Frame = 1 
Query:  421 YSRRQQQVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAIEALETCRNSATALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYD 1128
            Y +R +++++KKE  ++A+    ++ A ELY+EA+  V   +  T A L  NRA   T LK   +A+ DC++AL L P Y K      +     G WD A+   + C      L AT +++T               +E RN E + +   R +                    +Y  LGV  +A+ +E+K AYRK+ + HHPDKN  D A+ ERF+ + EAYE LSD  +R AYD
Sbjct:  274 YLKRARELEKKKEAGNEAFKKGDFKIARELYTEAL-AVDPDNKGTNAKLYQNRAITHTKLKAWNEAIEDCDEALKLDPTYTKARKTRAKALGESGDWDEALREYKAC------LEATPEDSTLR-------------KEIRNAEMELKKSKRKD--------------------YYKILGVDKNASENEIKKAYRKMAIIHHPDKNPDDAAAAERFKDIGEAYETLSDPQKRAAYD 469
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: U1GUQ9_ENDPU (J domain-containing protein n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1GUQ9_ENDPU)

HSP 1 Score: 102 bits (255), Expect = 2.960e-19
Identity = 75/231 (32.47%), Postives = 104/231 (45.02%), Query Frame = 1 
Query:  472 AYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAIEALETCRNSATALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYDTSLRRESTRSTG 1164
            A+ S  Y  A +LYSEA+  V   +  T + LL NRAAA   +K  ++AV DC+QAL L P Y K      +     G W+ A++ L+    S                      +    +E RN E + +   R +                    +Y  LG+   A+  ++K AYRKL + HHPDKN GD A+ ERF+ V EAYE LSD  +R  YD+    E     G
Sbjct:  458 AFKSGRYSTAVKLYSEALM-VDPSNKGTNSKLLQNRAAARMKIKEYKEAVEDCDQALRLDPTYTKAQRTRAKALGESGNWEQAVKELKEIAES-------------------NPEEPGMQKEIRNAELELKKSKRKD--------------------YYKILGIEKDASEQDIKKAYRKLAIVHHPDKNPGDEAAAERFKDVGEAYECLSDPQKRERYDSGADLEEMMGAG 648
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: A0A6A5WDS6_9PLEO (TPR-like protein n=1 Tax=Amniculicola lignicola CBS 123094 TaxID=1392246 RepID=A0A6A5WDS6_9PLEO)

HSP 1 Score: 101 bits (251), Expect = 9.220e-19
Identity = 71/238 (29.83%), Postives = 109/238 (45.80%), Query Frame = 1 
Query:  427 RRQQQVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAI---EALETCRNSATALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYDT 1131
            R  Q+++  KE  + A+ +  Y+ A + YS A+  V   +  T + +L NRA   T LK+ + A+ DC++AL L P Y K      +     G WD A+   +A+     S   +   ++ A  EL++ +R                                            +Y  LG+   AT +E+K AYRKL + HHPDKN  DP + ERF+ +QEA+E LSD  +R  YD+
Sbjct:  422 RMVQKLERTKEAGNAAFKAGRYQEAVDTYSTALE-VDPLNKNTNSKILQNRALCYTRLKKWQPAIADCDKALELDPAYTKARKTRAKALGESGNWDEAVREYKAIHDANPSEPGIAKEIRNAELELKKSKRK------------------------------------------DYYKILGIEKDATETEIKKAYRKLAIVHHPDKNPDDPHAEERFKEIQEAHETLSDSQKRARYDS 616
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: A0A074ZBU8_AURSE (J domain-containing protein n=3 Tax=Aureobasidium TaxID=5579 RepID=A0A074ZBU8_AURSE)

HSP 1 Score: 99.4 bits (246), Expect = 2.370e-18
Identity = 71/240 (29.58%), Postives = 109/240 (45.42%), Query Frame = 1 
Query:  421 YSRRQQQVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAIEALETCRNS---ATALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYDT 1131
            Y R  Q++   KE  +  + +  Y++A E Y+ A+  V  Q+  T + +L NRA   T LK  + A+ DCE+AL L P Y K      +     G W+ A++ L++   S      +   ++ A  EL++ +R                                            +Y  LG+   A   ++K AYRKL + HHPDKNQGD A+ +RF+ + EAYE LSD  +R  YD+
Sbjct:  267 YLRMVQKLDRMKEEGNGFFKTGKYQQAVETYTSALE-VDPQNRGTNSKILQNRALCYTKLKEWQKAIEDCERALKLDPSYTKARKTKAKAMGESGDWEAAVKELKSVAESNPEEPGIAKEIRNAELELKKSKRK------------------------------------------DYYKILGIEKDADDGQIKKAYRKLAIIHHPDKNQGDEAAADRFKDIGEAYETLSDSEKRARYDS 463
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: A0A8H4IW72_9PEZI (Tetratricopeptide TPR-1 n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4IW72_9PEZI)

HSP 1 Score: 100 bits (248), Expect = 2.530e-18
Identity = 76/235 (32.34%), Postives = 112/235 (47.66%), Query Frame = 1 
Query:  427 RRQQQVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAIEALETCRNSATALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYDT 1131
            R  Q++   KE  +QA+ S  Y+ A ++YS+A+  V  Q+  T + LL NRA A   LK  + +V DC +AL L P Y K      +    LGQ+D AI  L   +++                      +    ++ RN E +A+   R +                    +Y  LGV   A  +++K AYRKL + HHPDKN+ DP + ERF+ + EAYE LSD  +R  YD+
Sbjct:  398 RTVQKLDRMKEEGNQAFKSGKYKDAVDIYSKAL-DVDPQNKGTNSKLLQNRATANIKLKNYQQSVDDCIRALELDPSYTKARKTKAKALGELGQFDAAIVELNAVKDANPG-------------------EPGIQKDIRNMELEAKKAKRKD--------------------YYKILGVEKDADDNQIKKAYRKLAIVHHPDKNRDDPEAAERFKDIGEAYETLSDPQKRARYDS 592
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: A0A5E8B4G7_9ASCO (J domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8B4G7_9ASCO)

HSP 1 Score: 99.0 bits (245), Expect = 3.050e-18
Identity = 74/244 (30.33%), Postives = 121/244 (49.59%), Query Frame = 1 
Query:  427 RRQQQVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAIEAL----ETCRNSAT-----ALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYDT 1131
            +R + +++KK+  + A+    Y+ A +LY+EA++ V   +    + +L+NRA     LK  E A+ DCE ++ L PD+ KV     R+   L +W+ +++ L    E C+++ +     AL   ++EA  EL++  R                                            +Y  LGV  +A+ SELK AYRK  L HHPDKN  +P ++E+F+ V EAYE+LSD  +R+ YD+
Sbjct:  260 KRARAIEKKKKEGNDAFKLGKYQEARKLYTEALQ-VDLINKFVNSRILSNRATVYMKLKEYESALADCEASIELDPDFIKVRKTKARVLGSLKRWEDSVQTLKKVIEICQSNDSDEDIRALQQELREAEFELKKASRKN------------------------------------------YYDILGVSENASDSELKKAYRKQALLHHPDKNPNNPEAMEKFKEVGEAYEILSDPQKRQHYDS 460
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: A0A6G1IPX0_9PLEO (TPR-like protein n=1 Tax=Lentithecium fluviatile CBS 122367 TaxID=1168545 RepID=A0A6G1IPX0_9PLEO)

HSP 1 Score: 99.4 bits (246), Expect = 3.630e-18
Identity = 70/240 (29.17%), Postives = 112/240 (46.67%), Query Frame = 1 
Query:  421 YSRRQQQVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAI---EALETCRNSATALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYDT 1131
            Y R   ++++ K+  + A+ S  ++ A +LY++A+  V   +  T + LL NRA   T LK+  +A+ DC++AL L P Y K      +     G W+ A+   +A+     S   +   +++A  EL++ +R                                            +Y  LG+   AT  E+K AYRKL + HHPDKN GD  + ERF+ +QEA+E LSD  +R  YD+
Sbjct:  397 YLRMVTKLEKTKKDGNDAFKSGRFQEAIDLYTKAL-DVDPSNKNTNSKLLQNRALCYTRLKKWTEAIADCDKALELDPGYTKARKTRAKALGEGGNWEEAVREYKAIHEANPSEPGIAKEIRDAELELKKSKRK------------------------------------------DYYKILGIEKDATEPEIKKAYRKLAIVHHPDKNPGDEHAAERFKEIQEAHETLSDSQKRARYDS 593
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: UPI00160158CA (uncharacterized protein LOC118409086 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160158CA)

HSP 1 Score: 99.8 bits (247), Expect = 3.920e-18
Identity = 83/244 (34.02%), Postives = 116/244 (47.54%), Query Frame = 1 
Query:  439 QVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAIEALETCRNSATALHATVQEATSELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLE-----RFRAVQEAYEVLSDEVQRRAYDTSLRRESTR 1155
            Q+  +KE  + A+ S  YE+AYELY+EA+ T+  ++  T A L  NRAA    L R  DA+RDC QA+ L   Y K + R    +     ++ AI   ET               T E E+  R   EA  ++  N + D                             Y TLG+  SATA E+K AYRKL L+ HPDK+ G  A  +     +F+A+ EA++ LSD V+R  YD  LR++  R
Sbjct:  310 QLAARKEEGNVAFKSGEYEKAYELYTEAL-TIDPENKLTNAKLYNNRAAVCVKLGRLNDAIRDCTQAIELDSSYVKAISRRATCYMETECFEEAIRDFETVYKL---------NPTPENEKLLR---EAKQKQKLNMQTDF----------------------------YQTLGLERSATADEIKKAYRKLALKCHPDKHVGASADEKIAMEKKFKAIGEAHKTLSDPVERAQYDRELRQKELR 512
[Close]
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Match: A0A8E2EI39_9PEZI (TPR-like protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2EI39_9PEZI)

HSP 1 Score: 97.8 bits (242), Expect = 1.130e-17
Identity = 83/280 (29.64%), Postives = 121/280 (43.21%), Query Frame = 1 
Query:  421 YSRRQQQVKEKKECADQAYLSRFYERAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALWLKPDYPKVLLRMGRLHRRLGQWDFAIEALETCRNSATALHATVQEATS-ELEQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGHYATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEVLSDEVQRRAYDTS--LRRESTRSTG*ALTAWVKPSPRLKCYLFPSTVYSSFGGR 1251
            Y R  Q++   KE  +  + S  Y+ A E+YS+A+  V   +  T + +L NRA   T  K  + A+ DC +AL L P Y K      +     G WD A+  L+  + S  A     +E  S ELE  +  R++                                        +Y  LGV   AT  E+K AYRKL + HHPDKN  D  + +RF+ +QEA+E LSD  +R  YD+   L   S   +G     +  P       + P  +++ FGGR
Sbjct:  410 YLRMVQKLDRMKEEGNTLFKSGKYKDAIEMYSQAL-DVDPLNKGTNSKILQNRALCYTRTKSYKAAIADCTKALELDPSYTKARRTKAKALGESGNWDEAVRELKAIQESNPAEPGIAKEIRSAELELKKSQRKD----------------------------------------YYKILGVEKDATEQEIKKAYRKLAIVHHPDKNPDDEQAADRFKEIQEAHETLSDPQKRERYDSGEDLIDPSDMFSG---GGYGHPGMSGGVQIDPEMLFNMFGGR 645
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7382.16258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI4.520e-5848.26Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A3N4LM38_9PEZI2.260e-2133.05TPR-like protein n=1 Tax=Terfezia boudieri ATCC MY... [more]
U1GUQ9_ENDPU2.960e-1932.47J domain-containing protein n=2 Tax=Endocarpon pus... [more]
A0A6A5WDS6_9PLEO9.220e-1929.83TPR-like protein n=1 Tax=Amniculicola lignicola CB... [more]
A0A074ZBU8_AURSE2.370e-1829.58J domain-containing protein n=3 Tax=Aureobasidium ... [more]
A0A8H4IW72_9PEZI2.530e-1832.34Tetratricopeptide TPR-1 n=1 Tax=Botryosphaeria dot... [more]
A0A5E8B4G7_9ASCO3.050e-1830.33J domain-containing protein n=1 Tax=Saprochaete in... [more]
A0A6G1IPX0_9PLEO3.630e-1829.17TPR-like protein n=1 Tax=Lentithecium fluviatile C... [more]
UPI00160158CA3.920e-1834.02uncharacterized protein LOC118409086 n=1 Tax=Branc... [more]
A0A8E2EI39_9PEZI1.130e-1729.64TPR-like protein n=1 Tax=Lepidopterella palustris ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7382contigL-elsbetiae_contig7382:2725..8316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.9
Seed ortholog evalue2e-51
Seed eggNOG ortholog2880.D7G5Y3
KEGG koko:K09523,ko:K09524,ko:K09527,ko:K09536
KEGG Pathwayko04141,ko05164,map04141,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0484@1,KOG0550@2759,KOG0713@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons9
Model size1690
Cds size1122
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.0366306-UTR-L-elsbetiae_contig7382:2724..32471622816822.0366306-UTR-L-elsbetiae_contig7382:2724..3247Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7382 2725..3247 -
1691683839.6102376-UTR-L-elsbetiae_contig7382:2724..32471691683839.6102376-UTR-L-elsbetiae_contig7382:2724..3247Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7382 2725..3247 -
1622816822.155529-UTR-L-elsbetiae_contig7382:8271..83161622816822.155529-UTR-L-elsbetiae_contig7382:8271..8316Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7382 8272..8316 -
1691683839.7018723-UTR-L-elsbetiae_contig7382:8271..83161691683839.7018723-UTR-L-elsbetiae_contig7382:8271..8316Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7382 8272..8316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816822.0469975-CDS-L-elsbetiae_contig7382:3247..33221622816822.0469975-CDS-L-elsbetiae_contig7382:3247..3322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 3248..3322 -
1691683839.620731-CDS-L-elsbetiae_contig7382:3247..33221691683839.620731-CDS-L-elsbetiae_contig7382:3247..3322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 3248..3322 -
1622816822.0583975-CDS-L-elsbetiae_contig7382:4232..43371622816822.0583975-CDS-L-elsbetiae_contig7382:4232..4337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 4233..4337 -
1691683839.629128-CDS-L-elsbetiae_contig7382:4232..43371691683839.629128-CDS-L-elsbetiae_contig7382:4232..4337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 4233..4337 -
1622816822.072869-CDS-L-elsbetiae_contig7382:5330..54161622816822.072869-CDS-L-elsbetiae_contig7382:5330..5416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 5331..5416 -
1691683839.637797-CDS-L-elsbetiae_contig7382:5330..54161691683839.637797-CDS-L-elsbetiae_contig7382:5330..5416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 5331..5416 -
1622816822.0844762-CDS-L-elsbetiae_contig7382:5731..59061622816822.0844762-CDS-L-elsbetiae_contig7382:5731..5906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 5732..5906 -
1691683839.6467338-CDS-L-elsbetiae_contig7382:5731..59061691683839.6467338-CDS-L-elsbetiae_contig7382:5731..5906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 5732..5906 -
1622816822.0945706-CDS-L-elsbetiae_contig7382:6120..62101622816822.0945706-CDS-L-elsbetiae_contig7382:6120..6210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 6121..6210 -
1691683839.6555219-CDS-L-elsbetiae_contig7382:6120..62101691683839.6555219-CDS-L-elsbetiae_contig7382:6120..6210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 6121..6210 -
1622816822.1043854-CDS-L-elsbetiae_contig7382:6594..67711622816822.1043854-CDS-L-elsbetiae_contig7382:6594..6771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 6595..6771 -
1691683839.664154-CDS-L-elsbetiae_contig7382:6594..67711691683839.664154-CDS-L-elsbetiae_contig7382:6594..6771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 6595..6771 -
1622816822.1151178-CDS-L-elsbetiae_contig7382:7171..73081622816822.1151178-CDS-L-elsbetiae_contig7382:7171..7308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 7172..7308 -
1691683839.672603-CDS-L-elsbetiae_contig7382:7171..73081691683839.672603-CDS-L-elsbetiae_contig7382:7171..7308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 7172..7308 -
1622816822.1301887-CDS-L-elsbetiae_contig7382:7781..79341622816822.1301887-CDS-L-elsbetiae_contig7382:7781..7934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 7782..7934 -
1691683839.6809766-CDS-L-elsbetiae_contig7382:7781..79341691683839.6809766-CDS-L-elsbetiae_contig7382:7781..7934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 7782..7934 -
1622816822.1427133-CDS-L-elsbetiae_contig7382:8147..82711622816822.1427133-CDS-L-elsbetiae_contig7382:8147..8271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 8148..8271 -
1691683839.6894825-CDS-L-elsbetiae_contig7382:8147..82711691683839.6894825-CDS-L-elsbetiae_contig7382:8147..8271Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7382 8148..8271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7382.16258.1prot_L-elsbetiae_contig7382.16258.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7382 3248..8271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7382.16258.1

>prot_L-elsbetiae_contig7382.16258.1 ID=prot_L-elsbetiae_contig7382.16258.1|Name=mRNA_L-elsbetiae_contig7382.16258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
MAFEHVNDSWCVTKLKAECKRRGMVGYAGLRKADLIRRLNQDSTAADARS
GNPTGLVNDSLNVTELKAECKSRGIVGYSRLRKADLIRTLNRDFRDSAQA
SSAPHEGFASSTPVWPQEPSPSTNEYSRRQQQVKEKKECADQAYLSRFYE
RAYELYSEAVRTVHEQDTETKAALLANRAAALTNLKRNEDAVRDCEQALW
LKPDYPKVLLRMGRLHRRLGQWDFAIEALETCRNSATALHATVQEATSEL
EQCRRSRQEAHDEETRNREADAEVRARTNNSHTAGEDGRRRSSRFHSTGH
YATLGVRSSATASELKTAYRKLILEHHPDKNQGDPASLERFRAVQEAYEV
LSDEVQRRAYDTSLRRESTRSTG*
back to top

mRNA from alignment at L-elsbetiae_contig7382:2725..8316-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7382.16258.1 ID=mRNA_L-elsbetiae_contig7382.16258.1|Name=mRNA_L-elsbetiae_contig7382.16258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5592bp|location=Sequence derived from alignment at L-elsbetiae_contig7382:2725..8316- (Laminarionema elsbetiae ELsaHSoW15)
AGCACACGTCAGGTCCGTTCTGTCTGTCTGCTTCCGTGGAAAAAGATGGC
CTTCGAACACGTGAATGATTCTTGGTGCGTCACGAAACTGAAAGCCGAGT
GCAAGCGGCGAGGGATGGTGGGATATGCCGGGCTCCGAAAGGCTGATCTC
ATCCGCAGGCTCAACCAAGGTGCACTCAGTGTTTTGTGGGGTTATTTTTG
TGCCTGGTGTCGGTATGGCCCCTTCGCCACACCAGGTTACGTTGTCATCA
CACAAAGTTGGTAGCTTATGACAGCGCTGCAGAGGCTACCACCATTCTCC
ACCACAACGCTCCCGCCTGCCAGGCGGTATTGTTCGGTATGCCTCAGACC
GCATGGGTATTATTTACTGCGGCTGCCGACAGATTCAACGGCAGCAGATG
CCCGAAGCGGAAACCCTACCGGGCTCGTGAATGATTCTTTGAACGTCACG
GAACTGAAAGCCGAGTGCAAGTCGCGAGGGATTGTGGGATATTCCAGGCT
CCGAAAGGCTGATCTCATCCGCACGCTCAATCGAGGTACGCTCAGTGTTT
TGCCTGTCCCTCTTTGGTGTCGGCACACAATTTGTTTGCGGTAGCCGCCC
GCTCTTGCGTATGCACACCTCGAGCCCCTTTCAGCCAGTGCAAACCCGAA
ATCTGATCGCCACAACGCTTTGGTCGGAAAGCGTTACAATGGCAGCCTCG
TATGACGCCTGCTGAACATTGTGCCGTAAATTGTGGCTGCTTTTCCCGCT
TGGCGTGGGCTTTGTTTTGTCTCAGGGCTATTCCAGCCCCATTTCCCTGG
CGCAGTCCGCTATGATGGACGAAGGGGTTGGAGCAGTCCGCAAATTGTTG
CGTATGTAAATTTCGGCATCTCGATGTAAGGTTGGTTGGGGCACCCCATG
AACGCTCTCGATACGAGTGTACACCTTTCCGCTGTACCCGAAAGTGCTTG
GTTGGCCGTGCTATACTCACGCCCGCTGACGATTCTCTCCCCATCACCGA
GGTTGCAGATTTCAGGGATTCTGCGCAAGCCTCGTCTGCTCCACACGAGG
GTTTTGCATCGTCCACCCCAGTGTGGCCTCAAGAACCCTCTCCATCGACG
AACGAGTATTCGAGACGCCAGCAGCAAGTCAAGGAGAAAAAGGAGGTTGG
GCGCGTTGTGGTTTTGGGAGAGGGACGGGCTGATTGTCTGGCTAAAATAC
GTTCCTGGTTTCTACTCCTCCTTCAAAACATGTAATGTCAGATGTATGTG
CCCGTACTCAGGGGTGGACATGAATATACTATATACTAGAATGTTGCCCG
TGATACGTTCACCCCTCTGTTGGAACGGGTATTTTTGAGAAAAAAACAGT
ACGTGCAAGCAGTGAGACGGAGTTAGTGGGAATGGGCAGCAACCAGGGAG
GAGAGGGGGGGGGGGAGAGGGGAGAGATACCCTGGTAAATAATTCGCGCA
ATGAAGTGTTATGTGTGCCTGCACTTGCTCGTGAAGCGTCGCACCCACGT
TCCTCTCCCCCTCCCCCTTAACCCGTGAAACCCCACTCCCACCAGTGTGC
CGACCAAGCTTATTTGTCCAGATTTTACGAGCGAGCGTATGAGCTATATT
CGGAGGCAGTGCGTACGGTACATGAACAGGACACCGAAACCAAGGCAGCC
TTGCTGGCCAACCGCGCCGCAGCTCTCACGAACCTGAAGAGAAATGAGGA
CGCGGTTAGGGACTGCGAACAGGTGCGCTGTTCTCTGCTTTGCCCCCCAG
GATCTCAGGCTCAGGCAGCATCTCGTGCTAGCAAAGTAGCCCCACGCACT
TGCGTTCGACTTGAGGAATTTACCTTTTTTCTCCGCCCTCGCTTTTTCCG
TGATGTACATGTGCACTACTGTCAGAACAACAACTGGGCCCCCTTTTCTG
CCGAAACCTTGGTTTGCACATGTGCCTTGTTGTCGGTTCGGGGTATGTTT
TCGAGGTGCTTGTACCGAAATGGTTTTGTCTCTTCAGACGGCCGCCTACT
AAAGTTAAGCCGTCCCCAGTAGCGAGCGGCTGCCCTCTTGTTGCCATTTA
TCGTCGATCTCTACTGTGCCCGTTAACTCTAGGTCTTGTGCGCTTGCATG
TTGCAGGCTCTGTGGCTGAAGCCCGACTACCCGAAAGTGCTGTTGCGCAT
GGGCCGGCTCCACAGGCGCTTAGGCCAGTGGGATTTCGCCATCGAGGTAA
AAGCCAAAGGCGAGCAGAGTGCTCGTCTGCCCGGAGAAGAAATTCTGCAC
AGCACACAAAAGCTTAGGAGTGTTCTTTGTTCGAGTTTAACAGAGCTTGC
ATCGGTCGTCTCCACCTTTGCTTGGTGCCTATTGTAGGGTGGCAGCAAAG
CAAAGTTTAGGAATGATGAATCCTACCACCCCCCGCCGCCCCGGCATTTG
CATTGCCTAGGCCCTGGAGACCTGCCGCAACAGCGCGACCGCTCTCCACG
CAACAGTGCAAGAGGCAACAAGCGAACTCGAGCAATGCCGACGAAGCCGG
CAAGAGGCCCACGATGAGGAGACGAGGAACCGAGAAGCCGATGCGGAGGT
GCGGGCCCGGACTAACAACTCCCACACGGCAGGAGGTGATTTCGGGTATC
CGTTCGAGTATTCGTTGTGGTGAAAAGGAGAGGGGGATCGCGTGGTGGCG
AGACAAAGACATTCACGGCCGCCAATATCTACTCACGCTCCATTCAATCC
AACCCCCCGAAATGTGGGTGCACATGCTAGAAGCAAAGCTGCAAATTTCA
TGGTCTACGTACGCCAATTTTTACCACATTGAACATAAAACCCGAGTGAC
CAAAAGGTAGCATTGAATTGTTTGGCCGATCTCCATTGCTGCCAAATTGA
ACGCGTTCCGCGCCACATTGCTGTGACGCTGAATCTCGCGGCGAAATCAG
AGGACGGTCGTCGCAGGAGCAGCCGGTTTCATTCTACGGGGCACTATGCC
ACCCTCGGAGTCAGGTCGAGCGCTACCGCCTCGGAGGTATGTACGTGTAA
GGAGCACAGGGGGTAGACATCGGGATTGTGTAAACTATGGTCGGGCCTTT
TTTCCCACGTTTGAATTTTGGGGTAGGGAGGTAGGGATGACATGAGAGAG
CCCGAAGCGACACATAGCGGTGTTTTTGTGCCCATCTCCCTTATAAAAAT
GCCGTAGATCCCTGTCCGGCTGTCTTCTCTCACCGAAACGTTGGCGTCTC
CTGCGTTCCAAACGAGAATTGTTTCTAAGCTGGCCGAGCCAATACGTGGC
GTTGGCTGTTGGTGGCAGAGCAGAGAGCATATGCGGGGCTGCCGGCTGAA
AGAGCCCACGTGTGCACCGAGAAAAAATCATTACTTTCGTGTGCCGGAAA
AAGTCGCCGCATGCACAAATGGCTTAGACAGCAGCGAGCGTTAGAGGCCA
TGGAGCGCTCGGGGTGTTTGGGGGTGGGGGCTTGGGCTAAGCACCTCTTA
TTGGACCCTTGGAGGAACATGGTCGAAGCGCAGCAGGATCGGTACACAGT
GACGTTCGATCTGAAGAAATTTGGATTTGTTCGCAAACCCTCTCAAAAAT
TTCATTTTTCTCGAGATCTGGTCGGGTTTTTCTCTACGAAAAAAAAACAC
ACGCGCCGTGTGCACCAGACAAACTGCAGACACCGGAAGATAGCCAGGAC
TTTTCTCTTCAAGGAAGTGGGGCTTGAAACAGCCGAACGGTTCCCCACCC
CCCTAGATTTTGGGAAGCTAAACACATGTCCGTATTGTACTAATTTTAAA
CAAAACAAATTCCGGCACCATTTTTTTCCCCCGCAACTCTTGAGTTGAAA
GCCAATCCCTAACCAACCAACTGAGAGGGTCCTCGAAACATGATTCAGCC
CATCCCCTTAATCTGCTACGAAGTATCATCTATCTAAACATCGATGTAAA
TGCTAATGAGGGTTGGGCTGCTTTGCTGTGACGACTGATCGCGATTTTAC
CGTTGCGGCGGTGTCGGCCCTCCGTGCAGTTGAAGACGGCATACCGCAAG
CTAATATTGGAGCACCATCCGGACAAAAACCAGGGCGATCCTGCATCCCT
AGAGCGCTTCAGGGCAGTCCAGGAAGCCTACGAGGTGAGAACAATCATGA
AGAAGTGCAGGAAGAGGCTATATCTGCAACAAAGCTTGCCCGTAGCCTCT
GACAAAATACCTCCCATGGAACAGCACTGAGTTACGCTACTGGGCGTGGC
TTCACGGGGTCTCGGAAAGTCTGTCTCATGATACCTTTCATGACACCGCA
CGAGACGTCATGAAACGGCGCGTCGCGAGTTGCCGAGCTGTCATGAGGTG
GGTCCTAGGTGTCATGGTGCTTGTCGCGACACCCATTGAGACCTCGTTAG
ACCTCGTAGCAAGCAACCCATGGAACCTCGTGAGACCTCGCGTGAGACGT
CTCATGCGCATTTCTTGTGAGACTTCATGAAAAGTCTCACGAAACTGGAG
CTTTACGAGGTGTCGTGAGGCCTTTTGAGACCTCGTGAGTCCCTATGACA
CCTTATTGTTACACCCCATGACGTGAAAAGTCTCACGAAACCGGAGTTTT
ACGAGGTGTCGTGAGACCTTTTGAGACCTCGTGAGACCTCGTGAGTCCCC
ATGACACCTTTTGTCACACCCCATGACATTGCATGATACCTCACGCAGCG
TCATGCGGAGTCTCGTAAGACTGTATGTATGAGTTTTCTTCTGAGACTGG
CTGTAACAGCTCGTGAGATTTCATGATACCTCATGATACCTGAGACGTCT
CAATGAGACGTCTCAAAGCCGCGCCCAAAAGTGTCGAACCTAACCCCCAT
AGATGCTGTTCAGCGGTTCAATAGCCGAGAAACGAGGAAAATTGACCCAC
CTCTTCTAAATGATAACTTGCCCCCAAGCCTCCGAAACCGACAGTGTCGT
ACTTGGTGACTGGCGGCGAATAACAGTAAAGTGACTTCTTATTTCATACA
CACGCTCGGTTGTCGCTCTGCTCCCTGGGGTTTGGTTGCTACAGGTTCTC
AGCGATGAGGTGCAACGTCGCGCCTATGACACCAGCCTTCGCCGCGAATC
GACGCGGTCGACAGGCTAAGCACTGACTGCATGGGTAAAGCCGAGTCCGC
GGTTGAAATGTTATTTGTTTCCCAGTACCGTATACAGTTCATTTGGTGGG
AGATTCCTGTGCGCGTGGAATAGGGCAGAGGGGACGCAAGCGCTCTGACT
GCGCCGGGGATTCCAGTGTTTGGTTCATTTTTCATAGTGTGGGTATACCA
CCGACGCTGTCGACATCGAAAGTGCATTTCCACGCAACCAAGGCCTGGTA
TGGGCACGGCCGGCTTTAAGCTGGAAACGTGGACTAGTAGAAAGGTAGAT
CATCATTGGATACGCTCTCACAGGGTATCCAATTGGACGTCAAAAGCATG
CCAGGTGGGGCCACCATGCTCTTGCAAAGCTGACAGGGGAGCCAAGAATG
GGACAACATTGCTGTAGTGTGGAAGAAAGTATGACCAAAGAAAATCAACG
TTCATCAAAACCACCGTTGGCGTGATTTTCGTACGCTGCCCCTGTCCATC
CTGCATCTGGGCTTGTTGTAAGGGGCGTTTCCTTCCAGCAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7382:2725..8316-

>mRNA_L-elsbetiae_contig7382.16258.1 ID=mRNA_L-elsbetiae_contig7382.16258.1|Name=mRNA_L-elsbetiae_contig7382.16258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig7382:2725..8316- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTCGAACACGTGAATGATTCTTGGTGCGTCACGAAACTGAAAGC
CGAGTGCAAGCGGCGAGGGATGGTGGGATATGCCGGGCTCCGAAAGGCTG
ATCTCATCCGCAGGCTCAACCAAGATGGCCTTCGAACACGTGAATGATTC
TTGGTGCGTCACGAAACTGAAAGCCGAGTGCAAGCGGCGAGGGATGGTGG
GATATGCCGGGCTCCGAAAGGCTGATCTCATCCGCAGGCTCAACCAAGAT
TCAACGGCAGCAGATGCCCGAAGCGGAAACCCTACCGGGCTCGTGAATGA
TTCTTTGAACGTCACGGAACTGAAAGCCGAGTGCAAGTCGCGAGGGATTG
TGGGATATTCCAGGCTCCGAAAGGCTGATCTCATCCGCACGCTCAATCGA
GATTCAACGGCAGCAGATGCCCGAAGCGGAAACCCTACCGGGCTCGTGAA
TGATTCTTTGAACGTCACGGAACTGAAAGCCGAGTGCAAGTCGCGAGGGA
TTGTGGGATATTCCAGGCTCCGAAAGGCTGATCTCATCCGCACGCTCAAT
CGAGATTTCAGGGATTCTGCGCAAGCCTCGTCTGCTCCACACGAGGGTTT
TGCATCGTCCACCCCAGTGTGGCCTCAAGAACCCTCTCCATCGACGAACG
AGTATTCGAGACGCCAGCAGCAAGTCAAGGAGAAAAAGGAGATTTCAGGG
ATTCTGCGCAAGCCTCGTCTGCTCCACACGAGGGTTTTGCATCGTCCACC
CCAGTGTGGCCTCAAGAACCCTCTCCATCGACGAACGAGTATTCGAGACG
CCAGCAGCAAGTCAAGGAGAAAAAGGAGTGTGCCGACCAAGCTTATTTGT
CCAGATTTTACGAGCGAGCGTATGAGCTATATTCGGAGGCAGTGCGTACG
GTACATGAACAGGACACCGAAACCAAGGCAGCCTTGCTGGCCAACCGCGC
CGCAGCTCTCACGAACCTGAAGAGAAATGAGGACGCGGTTAGGGACTGCG
AACAGTGTGCCGACCAAGCTTATTTGTCCAGATTTTACGAGCGAGCGTAT
GAGCTATATTCGGAGGCAGTGCGTACGGTACATGAACAGGACACCGAAAC
CAAGGCAGCCTTGCTGGCCAACCGCGCCGCAGCTCTCACGAACCTGAAGA
GAAATGAGGACGCGGTTAGGGACTGCGAACAGGCTCTGTGGCTGAAGCCC
GACTACCCGAAAGTGCTGTTGCGCATGGGCCGGCTCCACAGGCGCTTAGG
CCAGTGGGATTTCGCCATCGAGGCTCTGTGGCTGAAGCCCGACTACCCGA
AAGTGCTGTTGCGCATGGGCCGGCTCCACAGGCGCTTAGGCCAGTGGGAT
TTCGCCATCGAGGCCCTGGAGACCTGCCGCAACAGCGCGACCGCTCTCCA
CGCAACAGTGCAAGAGGCAACAAGCGAACTCGAGCAATGCCGACGAAGCC
GGCAAGAGGCCCACGATGAGGAGACGAGGAACCGAGAAGCCGATGCGGAG
GTGCGGGCCCGGACTAACAACTCCCACACGGCAGGAGGCCCTGGAGACCT
GCCGCAACAGCGCGACCGCTCTCCACGCAACAGTGCAAGAGGCAACAAGC
GAACTCGAGCAATGCCGACGAAGCCGGCAAGAGGCCCACGATGAGGAGAC
GAGGAACCGAGAAGCCGATGCGGAGGTGCGGGCCCGGACTAACAACTCCC
ACACGGCAGGAGAGGACGGTCGTCGCAGGAGCAGCCGGTTTCATTCTACG
GGGCACTATGCCACCCTCGGAGTCAGGTCGAGCGCTACCGCCTCGGAGAG
GACGGTCGTCGCAGGAGCAGCCGGTTTCATTCTACGGGGCACTATGCCAC
CCTCGGAGTCAGGTCGAGCGCTACCGCCTCGGAGTTGAAGACGGCATACC
GCAAGCTAATATTGGAGCACCATCCGGACAAAAACCAGGGCGATCCTGCA
TCCCTAGAGCGCTTCAGGGCAGTCCAGGAAGCCTACGAGTTGAAGACGGC
ATACCGCAAGCTAATATTGGAGCACCATCCGGACAAAAACCAGGGCGATC
CTGCATCCCTAGAGCGCTTCAGGGCAGTCCAGGAAGCCTACGAGGTTCTC
AGCGATGAGGTGCAACGTCGCGCCTATGACACCAGCCTTCGCCGCGAATC
GACGCGGTCGACAGGCTAAGTTCTCAGCGATGAGGTGCAACGTCGCGCCT
ATGACACCAGCCTTCGCCGCGAATCGACGCGGTCGACAGGCTAA
back to top