mRNA_L-elsbetiae_contig7377.16250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 253 bits (645), Expect = 7.360e-78 Identity = 132/173 (76.30%), Postives = 145/173 (83.82%), Query Frame = 3 Query: 258 PLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXP--LVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 PLD+VRRAVWGMLYADDAGVVSRSA GLAR+MTIIV EVFGEFGLTVSEKKTETLLMR K+K + S P L IEAAGQ YAQTT F+YLGGL+ EHGDLTREIN+R+ A C+RRYG EL+DRP+APFRLKIRLLRAE MEALLYGCMTW+P HY+ L SIH RLL Sbjct: 269 PLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIV-EVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLL 440
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5L6A1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A1_9PHAE) HSP 1 Score: 248 bits (632), Expect = 1.140e-76 Identity = 129/173 (74.57%), Postives = 144/173 (83.24%), Query Frame = 3 Query: 258 PLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXP--LVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 PLD+VRRAVWG+LYADDAGVVSRSA GLAR+MTIIV EVFGEFGLTVSEKKTETLLMR K+K + S P L IEAAGQ YAQTT F+YLGGL+ EHGDLTREIN+R+ A C+RRYG EL+DRP+APFRLKIRLL+AE MEALLYGCM W+P HY+ L SIH RLL Sbjct: 215 PLDRVRRAVWGVLYADDAGVVSRSAEGLARMMTIIV-EVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPIPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMAWSPLSGHYQTLRSIHHRLL 386
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5K8C3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C3_9PHAE) HSP 1 Score: 251 bits (641), Expect = 1.300e-75 Identity = 131/173 (75.72%), Postives = 145/173 (83.82%), Query Frame = 3 Query: 258 PLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXP--LVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 PLD+VRRAVWGMLYADDAGVVSRSA GLAR+MTIIV EVFGEFGLTVSEKKTETLLMR K+K + S P L IEAAGQ YAQTT F+YLGGL+ EHGDLTREIN+R+ A C+RRYG EL+DRP+APFRLKIRLL+AE MEALLYGCMTW+P HY+ L SIH RLL Sbjct: 392 PLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIV-EVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLL 563
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5KZ04_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ04_9PHAE) HSP 1 Score: 239 bits (610), Expect = 1.360e-75 Identity = 126/173 (72.83%), Postives = 140/173 (80.92%), Query Frame = 3 Query: 258 PLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXP--LVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 PLD+VRR VWGMLYADDAGVVSRSA GLAR MT I+VEVFGEFGLTVSEKKTETLLMR K+K + S P L IEAAGQ YAQTT F+YLGGL+ EHGDLT EIN+R+ A +RRYG EL+ RP+APFRLKIRLL+AE MEALLYGCMTW+P HY+ L SIH RLL Sbjct: 75 PLDRVRREVWGMLYADDAGVVSRSAEGLAR-MTAIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPGPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTPEINYRSRGAWAYLRRYGRELFGRPKAPFRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLL 246
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5K6C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C6_9PHAE) HSP 1 Score: 237 bits (605), Expect = 1.810e-75 Identity = 124/165 (75.15%), Postives = 137/165 (83.03%), Query Frame = 3 Query: 258 PLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQ------SPPSXXXXPLVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEH 734 PLD+VRRAVWGMLYADDAGVVSRSA GLAR+MTIIV EVFGEFGLT+SEKKTETLLMR K+K SPP PL IEAAGQ YAQTT F+YLGGL+ EHGDLTREIN+R+ A C+RRYG EL+DRP+APFRLKIRLL+AE MEALLYGCMTW+P H Sbjct: 63 PLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIV-EVFGEFGLTLSEKKTETLLMRAKDKPTTSQPASPP-----PLTIEAAGQRYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGH 221
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE) HSP 1 Score: 241 bits (615), Expect = 9.880e-75 Identity = 124/171 (72.51%), Postives = 140/171 (81.87%), Query Frame = 3 Query: 258 PLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXPLVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 PLD+V+RAVWGMLYADDAGVVSRSA GLAR+MTIIV EVFGEFGLTVSEKKTETLLMR + + PL IEAAGQ YAQ T F+YLGGL+ EHGDLTRE N+R+ A C+RRYG EL+DRP+APFRLKIRLL+AE M+ALLYGCMTW+P HY+ L SIH RLL Sbjct: 136 PLDRVQRAVWGMLYADDAGVVSRSAEGLARMMTIIV-EVFGEFGLTVSEKKTETLLMRKGQADTSQPAPPPPLTIEAAGQKYAQKTEFRYLGGLVNEHGDLTRENNYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMDALLYGCMTWSPLSGHYQTLRSIHHRLL 305
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE) HSP 1 Score: 245 bits (626), Expect = 1.690e-74 Identity = 129/173 (74.57%), Postives = 143/173 (82.66%), Query Frame = 3 Query: 258 PLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXP--LVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 PLD+VRRAVWGMLYADDAGVVSRSA GLAR+MTIIV EVFGEFGLTVSEKKTETLLMR K+K + S P L IEAAGQ YAQTT F+Y GGL+ +HGDLTREIN R+ A C+RRYG EL+DRP+APFRLKIRLL+AE MEALLYGCMTW+P HY+ L SIH RLL Sbjct: 253 PLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIV-EVFGEFGLTVSEKKTETLLMRAKDKPATTSQPASPPPLTIEAAGQEYAQTTEFQYPGGLVNDHGDLTREINCRSRGAWACLRRYGRELFDRPKAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLL 424
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE) HSP 1 Score: 238 bits (606), Expect = 8.330e-73 Identity = 126/170 (74.12%), Postives = 145/170 (85.29%), Query Frame = 3 Query: 261 LDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXPLVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 LD+VRRAVWGMLYADDAG+VS+SA+GLAR+MTIIV EVF EFGLTVSE+KTETL+MRVKE+Q XXXX L IEAAGQ YAQTT F+YLGGL+ E GDLTREIN R+ AA C++RY EL+DRP APFRLK RLL+AE +EALLYGCMTW+PR +HYRLL + H RLL Sbjct: 247 LDRVRRAVWGMLYADDAGIVSKSADGLARMMTIIV-EVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRDHYRLLQTTHHRLL 415
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 244 bits (623), Expect = 1.460e-72 Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 3 Query: 258 PLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXP--LVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 PLD+VRRAVWGM YADDAGVVSRSA GLAR+MTIIV EVFGEFGLTVSEKKTETLLMR K+K + S P L I+AAGQ YAQTT F+YLGGL+ EHGDLTREIN+R+ A C+RRYG EL+DRP+AP RLKIRLL+AE MEALLYGCMTW+P HY+ L SIH RLL Sbjct: 342 PLDRVRRAVWGMSYADDAGVVSRSAEGLARMMTIIV-EVFGEFGLTVSEKKTETLLMRAKDKPTTISQTAPPPPLTIKAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLL 513
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE) HSP 1 Score: 237 bits (605), Expect = 2.860e-72 Identity = 128/170 (75.29%), Postives = 144/170 (84.71%), Query Frame = 3 Query: 261 LDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEKKTETLLMRVKEKQSPPSXXXXPLVIEAAGQTYAQTTVFKYLGGLITEHGDLTREINFRNGAASGCMRRYGPELYDRPRAPFRLKIRLLRAEPMEALLYGCMTWAPRIEHYRLLTSIHLRLL 770 LD+VRRAVWGMLYADDAGVVS+SA+GLAR+MTIIV EVF EFGLTVSE+KTETL+MRVKE+Q XXXX L IEAAGQ YAQTT F+YLGGLI E GDLTREIN R+ AA C+RRY EL+DRP APFRLK RLL+AE + ALLYGCMTW+PR +HYRLL + H RLL Sbjct: 113 LDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIV-EVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLL 281 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7377.16250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7377.16250.1 >prot_L-elsbetiae_contig7377.16250.1 ID=prot_L-elsbetiae_contig7377.16250.1|Name=mRNA_L-elsbetiae_contig7377.16250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp MPLDQVRRAVWGMLYADDAGVVSRSANGLARVMTIIVVEVFGEFGLTVSEback to top mRNA from alignment at L-elsbetiae_contig7377:9121..9890+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7377.16250.1 ID=mRNA_L-elsbetiae_contig7377.16250.1|Name=mRNA_L-elsbetiae_contig7377.16250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=770bp|location=Sequence derived from alignment at L-elsbetiae_contig7377:9121..9890+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7377:9121..9890+ >mRNA_L-elsbetiae_contig7377.16250.1 ID=mRNA_L-elsbetiae_contig7377.16250.1|Name=mRNA_L-elsbetiae_contig7377.16250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig7377:9121..9890+ (Laminarionema elsbetiae ELsaHSoW15)back to top |