mRNA_L-elsbetiae_contig737.16241.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig737.16241.1
Unique NamemRNA_L-elsbetiae_contig737.16241.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 4.040e-21
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   94 VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQVRTALAK 267
            VGET CGKTALVQRL EGTGRDLVVQ+L LQTDGADLLGGFRPVELRQLA+V     K
Sbjct:  800 VGETGCGKTALVQRLAEGTGRDLVVQNLSLQTDGADLLGGFRPVELRQLAEVAAMSGK 857
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.620e-20
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:   94 VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQVRT 255
            VGET CGKTALVQRL EGTGR+LVVQ+L LQTDGADLLGG+RPVELRQLA+V++
Sbjct:  850 VGETGCGKTALVQRLAEGTGRNLVVQNLSLQTDGADLLGGYRPVELRQLAEVKS 903
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: A0A7S1YT04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YT04_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.020e-13
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   52 VETLGVFDGQEEDE--VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQ 246
            +E+  V   Q E    VGET CGKT L+QRL    G++L+VQ+L LQTD +DLLGG++P+ELRQLA+
Sbjct:  193 MESAAVCIAQNEPTLLVGETGCGKTTLIQRLASLYGKELIVQNLSLQTDSSDLLGGYKPLELRQLAR 259
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: A0A7S3VEM6_9STRA (Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEM6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.930e-13
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   52 VETLGVFDGQEEDE--VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQ 246
            +E+ GV   Q E    VGET CGKT ++QRL   +G +LVVQ+L LQTD  DLLGG+RP+E+R +A+
Sbjct:  784 MESAGVSIAQNEPTLLVGETGCGKTTIIQRLASLSGHELVVQNLSLQTDSTDLLGGYRPLEIRHIAR 850
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.940e-13
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   94 VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQ 246
            VGET CGKT LVQ+L    G+ LVVQ+L LQTD ADLLGG+RPVEL QLA+
Sbjct:  351 VGETGCGKTTLVQQLARALGQTLVVQNLSLQTDSADLLGGYRPVELWQLAK 401
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: K0TEP4_THAOC (Midasin n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEP4_THAOC)

HSP 1 Score: 72.4 bits (176), Expect = 7.450e-13
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   52 VETLGVFDGQEEDE--VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQ 246
            +E++ V   Q E    VGET CGKT LVQRL   TGR L+VQ+L LQTD  DLLGG++P+E+R +A+
Sbjct:  874 MESVAVCVSQNEPALLVGETGCGKTTLVQRLANLTGRRLLVQNLSLQTDSTDLLGGYKPLEMRHVAR 940
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: A0A4D9D334_9STRA (VWFA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D334_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.690e-11
Identity = 29/51 (56.86%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   94 VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQ 246
            +GET CGKT+++Q L   +G+ LVVQ+L LQ+D ADL+GG+RP+EL Q+A+
Sbjct:  696 IGETGCGKTSMIQALARASGQSLVVQNLSLQSDSADLIGGYRPLELGQIAR 746
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: A0A7R9VCP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VCP7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.570e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   94 VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQ 246
            VGET CGKT ++QRL   + R LVV +L LQTD  DLLGG+RP+E+R+ A+
Sbjct:   38 VGETGCGKTTILQRLASMSSRPLVVLNLSLQTDSTDLLGGYRPLEMRRAAR 88
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: A0A397EQD9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EQD9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.060e-10
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   94 VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQ 246
            VGET CGKT L+Q L    G+ LVVQ+L +Q+D ADLLGG++PV++ QLA+
Sbjct:  596 VGETGCGKTTLIQYLASALGQTLVVQNLNVQSDSADLLGGYKPVDMYQLAR 646
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BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Match: A0A418BYE1_9STRA (Nudix hydrolase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BYE1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.080e-10
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   94 VGETRCGKTALVQRLGEGTGRDLVVQHLGLQTDGADLLGGFRPVELRQLAQ 246
            VGET CGKT L+Q L    G+ LVVQ+L +Q+D ADLLGG++PV++ QLA+
Sbjct:  996 VGETGCGKTTLIQYLASALGQTLVVQNLNVQSDSADLLGGYKPVDMYQLAR 1046
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig737.16241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL29_ECTSI4.040e-2182.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB27_9PHAE2.620e-2083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1YT04_9STRA2.020e-1355.22Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S3VEM6_9STRA2.930e-1353.73Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
A0A835Z947_9STRA3.940e-1370.59P-loop containing nucleoside triphosphate hydrolas... [more]
K0TEP4_THAOC7.450e-1355.22Midasin n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
A0A4D9D334_9STRA1.690e-1156.86VWFA domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7R9VCP7_9STRA4.570e-1158.82Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A397EQD9_9STRA1.060e-1058.82Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A418BYE1_9STRA1.080e-1058.82Nudix hydrolase domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig737contigL-elsbetiae_contig737:11904..12919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue4.6e-18
Seed eggNOG ortholog2880.D7FL29
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size272
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.2157102-CDS-L-elsbetiae_contig737:11903..119961622816820.2157102-CDS-L-elsbetiae_contig737:11903..11996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig737 11904..11996 +
1691683838.356231-CDS-L-elsbetiae_contig737:11903..119961691683838.356231-CDS-L-elsbetiae_contig737:11903..11996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig737 11904..11996 +
1622816820.2284753-CDS-L-elsbetiae_contig737:12742..129191622816820.2284753-CDS-L-elsbetiae_contig737:12742..12919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig737 12743..12919 +
1691683838.3678095-CDS-L-elsbetiae_contig737:12742..129191691683838.3678095-CDS-L-elsbetiae_contig737:12742..12919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig737 12743..12919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig737.16241.1prot_L-elsbetiae_contig737.16241.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig737 11904..12919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig737.16241.1

>prot_L-elsbetiae_contig737.16241.1 ID=prot_L-elsbetiae_contig737.16241.1|Name=mRNA_L-elsbetiae_contig737.16241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
AAGREPGSRDFLKLCARVETLGVFDGQEEDEVGETRCGKTALVQRLGEGT
GRDLVVQHLGLQTDGADLLGGFRPVELRQLAQVRTALAK*
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mRNA from alignment at L-elsbetiae_contig737:11904..12919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig737.16241.1 ID=mRNA_L-elsbetiae_contig737.16241.1|Name=mRNA_L-elsbetiae_contig737.16241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1016bp|location=Sequence derived from alignment at L-elsbetiae_contig737:11904..12919+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGGGCGAGAGCCCGGATCCCGCGACTTCCTGAAGCTCTGCGCAAG
GGTGGAAACCCTCGGCGTGTTCGACGGCCAGGAGGAAGACGAGGTGCGTG
TTAGGCCGCGCGCTCAACTGTTTTTTATTTTAAACAAGTGCCTTCAAATG
TCAGCGGTCTACGTCCAGGGGGACTGCTGTAGAATAGACACACTATCCCT
CCCCCCCCCCCCCCCCCTGACTACTGTACTGGCACAAAATCAGCAAGCCG
TACAACAGCAGTTCGTGGTTTTCTTGCCCACGGAATGTTTGTTGTGGGAG
TATGGTATCTTCCGTTTGCGCGCGCGCCAAGTTAGTTTTTGGGAAATTTT
CGGGGCCTCGTATGGGCAGGTCACTTGGTTCTGAGAGGAAATTTTCAGCT
GTGTGATGTTGAGAAGCTGGAGGGCCACCCCCTTAAGCCCCTTATCGTAT
TTGGGGCACAAAGGGCTGTGGCAGCCTTCACTACCCCACTCAACCAATTA
ATACAATTTATATTTATGTGATGCCATTCGCGGTTGTTTGTTGATCGTTG
TGATTTTCTCTGCCGTTTATTTGTTTTTGTCTCTCTTTCCTGGTTTTCTC
GCTGATTTGTCAGCGACGTTCGAGCTCGAAGATGGCATTTCTGTTTCCAT
CAAACCAATTCGGCCTTCCCCAAACGATGTAACCTCCCTAGTTTTTCTTT
CTTACGTATGATATCATGTAAAAGGAAGGATCTCCCGCCACCTGCGGTCT
GCCGCCGTCCCGTGCCTTGATCCTCGCCCTAACCCTGCTCTCATGCCAAC
CAATTGGATTGATGATGTCAACTCTCACTCGCTCTTCAGGTTGGAGAGAC
TAGATGCGGCAAGACCGCCCTCGTCCAACGACTCGGAGAAGGCACCGGCC
GCGACCTGGTGGTGCAACACCTCGGCCTTCAGACCGACGGGGCCGACCTA
CTGGGGGGCTTCCGTCCTGTAGAGCTCCGACAACTTGCACAGGTGAGGAC
AGCGCTGGCCAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig737:11904..12919+

>mRNA_L-elsbetiae_contig737.16241.1 ID=mRNA_L-elsbetiae_contig737.16241.1|Name=mRNA_L-elsbetiae_contig737.16241.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig737:11904..12919+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGGGCGAGAGCCCGGATCCCGCGACTTCCTGAAGCTCTGCGCAAG
GGTGGAAACCCTCGGCGTGTTCGACGGCCAGGAGGAAGACGAGGCGGCGG
GGCGAGAGCCCGGATCCCGCGACTTCCTGAAGCTCTGCGCAAGGGTGGAA
ACCCTCGGCGTGTTCGACGGCCAGGAGGAAGACGAGGTTGGAGAGACTAG
ATGCGGCAAGACCGCCCTCGTCCAACGACTCGGAGAAGGCACCGGCCGCG
ACCTGGTGGTGCAACACCTCGGCCTTCAGACCGACGGGGCCGACCTACTG
GGGGGCTTCCGTCCTGTAGAGCTCCGACAACTTGCACAGGTGAGGACAGC
GCTGGCCAAATAGGTTGGAGAGACTAGATGCGGCAAGACCGCCCTCGTCC
AACGACTCGGAGAAGGCACCGGCCGCGACCTGGTGGTGCAACACCTCGGC
CTTCAGACCGACGGGGCCGACCTACTGGGGGGCTTCCGTCCTGTAGAGCT
CCGACAACTTGCACAGGTGAGGACAGCGCTGGCCAAATAG
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