mRNA_L-elsbetiae_contig737.16240.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig737.16240.1
Unique NamemRNA_L-elsbetiae_contig737.16240.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig737.16240.1 vs. uniprot
Match: D7FL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL29_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.120e-25
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:    2 LEGRPLILPGRSRPLRAAPGFRVFGNVTTAGAGRVVIGGAADFGALWTHVPVKPLSTPEIMHVAPATPDFLPPP 223
            LEGRPL LPGR+RPL AAPGFRVFG VTT GAG VV+GGAADFGALWTHVPV+PLS  E + VA A    LPPP
Sbjct:  528 LEGRPLTLPGRTRPLIAAPGFRVFGTVTTVGAGGVVLGGAADFGALWTHVPVEPLSVSETLRVAKARYPGLPPP 601
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BLAST of mRNA_L-elsbetiae_contig737.16240.1 vs. uniprot
Match: A0A6H5JB27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB27_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.080e-25
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 2 
Query:    2 LEGRPLILPGRSRPLRAAPGFRVFGNVTTAGAGRVVIGGAADFGALWTHVPVKPLSTPEIMHVAPATPDFLP 217
            LEGRPL LPGR+RPL AAPGFRVFG VTT GAG VV+GGAADFGALWTHVPV+PLS  E +HVA A    LP
Sbjct:  575 LEGRPLTLPGRTRPLIAAPGFRVFGTVTTVGAGGVVLGGAADFGALWTHVPVEPLSVSETLHVAKARYPGLP 646
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BLAST of mRNA_L-elsbetiae_contig737.16240.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.550e-11
Identity = 36/74 (48.65%), Postives = 44/74 (59.46%), Query Frame = 2 
Query:    2 LEGRPLILPGRSRPLRAAPGFRVFGNVTTAGAGRVV----------IGGAADFGALWTHVPVKPLSTPEIMHVA 193
            LEGRPL++PG S PL AAPGFR+FG VTT   G                AA+FGALWT + + PL+  E+  VA
Sbjct:  106 LEGRPLVIPGWSTPLSAAPGFRLFGTVTTPDGGAAAGAXXXXXXXXXXXAANFGALWTQIAIAPLAPEELYAVA 179
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BLAST of mRNA_L-elsbetiae_contig737.16240.1 vs. uniprot
Match: A0A7S0PKL3_9CHLO (Hypothetical protein (Fragment) n=7 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PKL3_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 6.410e-6
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 2 
Query:    2 LEGRPLILPGRSRPLRAAPGFRVFGNVTTAGAGRVVIGGAADFGALWTHVPVKP 163
            LE R L +PGR   ++AAPGF++FG+VTT  AGR    GA     LWT V V+P
Sbjct:  103 LEKRKLYVPGRGESIQAAPGFQLFGSVTTE-AGRSTSAGADPLSGLWTRVVVEP 155
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BLAST of mRNA_L-elsbetiae_contig737.16240.1 vs. uniprot
Match: A0A090LY22_OSTTA (Midasin n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090LY22_OSTTA)

HSP 1 Score: 50.1 bits (118), Expect = 5.820e-5
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:    2 LEGRPLILPGRSRPLRAAPGFRVFGNVTTAGAGRVVIGGAADFGALWTHVPVKP 163
            LE R L +PGR   ++AAPGF++FG+VTT  AGR     A     LWT V V+P
Sbjct:  201 LEKRKLYVPGRGESVQAAPGFQLFGSVTTE-AGRSASSSADPLSGLWTRVVVEP 253
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BLAST of mRNA_L-elsbetiae_contig737.16240.1 vs. uniprot
Match: A0A7R9T4J0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T4J0_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 7.960e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:    2 LEGRPLILPGRSRPLRAAPGFRVFGNVTTAGAGRVVIGGAADFGALWTHVPVKP 163
            LE R L +PGR   ++AAPGF++FG++TT  AGR     A     LWT V V+P
Sbjct:  347 LEKRRLYVPGRGESIQAAPGFQLFGSITTE-AGRSTSASADPLSGLWTRVVVEP 399
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig737.16240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FL29_ECTSI1.120e-2575.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB27_9PHAE2.080e-2576.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z947_9STRA8.550e-1148.65P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0PKL3_9CHLO6.410e-651.85Hypothetical protein (Fragment) n=7 Tax=Ostreococc... [more]
A0A090LY22_OSTTA5.820e-550.00Midasin n=2 Tax=Ostreococcus tauri TaxID=70448 Rep... [more]
A0A7R9T4J0_9CHLO7.960e-548.15Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig737contigL-elsbetiae_contig737:10965..11898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816820.1719513-CDS-L-elsbetiae_contig737:10964..111121622816820.1719513-CDS-L-elsbetiae_contig737:10964..11112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig737 10965..11112 +
1691683838.3248305-CDS-L-elsbetiae_contig737:10964..111121691683838.3248305-CDS-L-elsbetiae_contig737:10964..11112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig737 10965..11112 +
1622816820.184178-CDS-L-elsbetiae_contig737:11766..118971622816820.184178-CDS-L-elsbetiae_contig737:11766..11897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig737 11767..11897 +
1691683838.3449535-CDS-L-elsbetiae_contig737:11766..118971691683838.3449535-CDS-L-elsbetiae_contig737:11766..11897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig737 11767..11897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig737.16240.1prot_L-elsbetiae_contig737.16240.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig737 10965..11897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig737.16240.1

>prot_L-elsbetiae_contig737.16240.1 ID=prot_L-elsbetiae_contig737.16240.1|Name=mRNA_L-elsbetiae_contig737.16240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
AGGQAVDPAREVAASEGGARVQGVWKRDDGWGGAGGDWRGRRFRGSLDAR
ASQAPFHPRNNARGPSYPGLPSTASKLLPRTMITARAGSGLTS
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mRNA from alignment at L-elsbetiae_contig737:10965..11898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig737.16240.1 ID=mRNA_L-elsbetiae_contig737.16240.1|Name=mRNA_L-elsbetiae_contig737.16240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=934bp|location=Sequence derived from alignment at L-elsbetiae_contig737:10965..11898+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGAGGGCAGGCCGTTGATCCTGCCAGGGAGGTCGCGGCCTCTGAGGG
CGGCGCCCGGGTTCAGGGTGTTTGGAAACGTGACGACGGCTGGGGCGGGG
CGGGTGGTGATTGGCGGGGCCGCCGATTTCGGGGCTCTTTGGACGCACGT
GAGTTGGAGTTTTGCATGTATGCGTATGCGTGTGTAGTTGTTGTTGTTGT
GGCTGTTGTTTCTCACATTAGCTCTGTAGTCCAAAAGTATCCATGGGGGC
CCGTGGTCACAAAAACAGGACATACTCGACGCCGCTCAAGGAAAGTAAAA
CAAAACTAAGATACGTACATACGCGCCAGGCAGTACTAAACTGACTCCCG
GAGGGGTCTTGCGTCTCGCTGGCACTTAAAAAACAAACCGTAGGGTACCG
CGATGAAACATAACTGGCAGGCACCGCAGGAGGGGGTCCACCCCCCCCCC
CTCCTGCGTGACCCCGGTCGGGTCGTCTAGAACAATGGGAGGAAAAACAA
AAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTTGGGCGAGTGTG
TGACTGTCCCAGCGCATCTTTGTCCTCTGTGTTTCTTTGGTAGGTGTGTG
CGCTGTGTACATTGTTTGCTCACATGTGAACTCGTTTTGTATTTCCGCTA
CAGCAGTCCGTGGTGCAACTTATTTTAAGTGATGTTGGACTCCTGCCTGC
CTGCCTGCCTGCCTGCCTGCCTAATGCCACCCCCTGCCCGTATGCACGCC
TCTCCCCCCCCCCCTCCCTTACCCATCCTCCCATTTTTCTTTCCCACATC
AGGTGCCAGTCAAGCCCCTTTCCACCCCCGAAATAATGCACGTGGCCCCA
GCTACCCCGGACTTCCTTCCACCGCCTCGAAACTCCTTCCTCGCACCATG
ATCACCGCAAGAGCAGGCTCCGGATTGACATCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig737:10965..11898+

>mRNA_L-elsbetiae_contig737.16240.1 ID=mRNA_L-elsbetiae_contig737.16240.1|Name=mRNA_L-elsbetiae_contig737.16240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig737:10965..11898+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGAGGGCAGGCCGTTGATCCTGCCAGGGAGGTCGCGGCCTCTGAGGG
CGGCGCCCGGGTTCAGGGTGTTTGGAAACGTGACGACGGCTGGGGCGGGG
CGGGTGGTGATTGGCGGGGCCGCCGATTTCGGGGCTCTTTGGACGCACGC
TGGAGGGCAGGCCGTTGATCCTGCCAGGGAGGTCGCGGCCTCTGAGGGCG
GCGCCCGGGTTCAGGGTGTTTGGAAACGTGACGACGGCTGGGGCGGGGCG
GGTGGTGATTGGCGGGGCCGCCGATTTCGGGGCTCTTTGGACGCACGTGC
CAGTCAAGCCCCTTTCCACCCCCGAAATAATGCACGTGGCCCCAGCTACC
CCGGACTTCCTTCCACCGCCTCGAAACTCCTTCCTCGCACCATGATCACC
GCAAGAGCAGGCTCCGGATTGACATCTGTGCCAGTCAAGCCCCTTTCCAC
CCCCGAAATAATGCACGTGGCCCCAGCTACCCCGGACTTCCTTCCACCGC
CTCGAAACTCCTTCCTCGCACCATGATCACCGCAAGAGCAGGCTCCGGAT
TGACATCT
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