mRNA_L-elsbetiae_contig736.16232.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig736.16232.1
Unique NamemRNA_L-elsbetiae_contig736.16232.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig736.16232.1 vs. uniprot
Match: D8LM70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM70_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.340e-6
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 MTDLEDANGKGYRPGFQVVRACVTP 75
            MTDLEDANGK YRPGFQVVRACVTP
Sbjct:   86 MTDLEDANGKSYRPGFQVVRACVTP 110
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig736.16232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM70_ECTSI1.340e-696.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig736contigL-elsbetiae_contig736:31607..32002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size396
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816819.453776-CDS-L-elsbetiae_contig736:31606..317501622816819.453776-CDS-L-elsbetiae_contig736:31606..31750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig736 31607..31750 +
1691683837.827261-CDS-L-elsbetiae_contig736:31606..317501691683837.827261-CDS-L-elsbetiae_contig736:31606..31750Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig736 31607..31750 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816819.4681091-UTR-L-elsbetiae_contig736:31750..320021622816819.4681091-UTR-L-elsbetiae_contig736:31750..32002Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig736 31751..32002 +
1691683837.839635-UTR-L-elsbetiae_contig736:31750..320021691683837.839635-UTR-L-elsbetiae_contig736:31750..32002Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig736 31751..32002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig736.16232.1prot_L-elsbetiae_contig736.16232.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig736 31607..31750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig736.16232.1

>prot_L-elsbetiae_contig736.16232.1 ID=prot_L-elsbetiae_contig736.16232.1|Name=mRNA_L-elsbetiae_contig736.16232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
MTDLEDANGKGYRPGFQVVRACVTPVSRRRCKYVVPVLASTTVPGTT*
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mRNA from alignment at L-elsbetiae_contig736:31607..32002+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig736.16232.1 ID=mRNA_L-elsbetiae_contig736.16232.1|Name=mRNA_L-elsbetiae_contig736.16232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig736:31607..32002+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGACCTGGAGGACGCCAACGGGAAGGGGTACCGACCGGGGTTCCA
GGTCGTCAGGGCGTGCGTCACCCCGGTGAGCAGGCGGCGGTGTAAGTATG
TAGTGCCGGTGCTAGCTAGCACTACAGTGCCCGGTACTACATAGTGGTCG
TATGATATATACAGTGTTTTGTCGACGTACCTGACCTGACCTGACCTCTC
CGTTCGGCATGAAAATACTCGTTTAGTTGTGCGCCGCGCCTGCAGTTTGA
GACTGATCAGAAGCAGCCGTAGTCCTAGTTTATTGCGGTGATTTTTAGGT
CGAGAGAGAGAGATGATGATGCGCGTGACTTGATGTATCGGGGAGACCCG
CGCCAAACCGGTGCGTCCTTGTTTTTTCTTGCGTGGTGGGTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig736:31607..32002+

>mRNA_L-elsbetiae_contig736.16232.1 ID=mRNA_L-elsbetiae_contig736.16232.1|Name=mRNA_L-elsbetiae_contig736.16232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig736:31607..32002+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGACCTGGAGGACGCCAACGGGAAGGGGTACCGACCGGGGTTCCA
GGTCGTCAGGGCGTGCGTCACCCCGGTGAGCAGGCGGCGGTGTAAGTATG
TAGTGCCGGTGCTAGCTAGCACTACAGTGCCCGGTACTACATAGATGACG
GACCTGGAGGACGCCAACGGGAAGGGGTACCGACCGGGGTTCCAGGTCGT
CAGGGCGTGCGTCACCCCGGTGAGCAGGCGGCGGTGTAAGTATGTAGTGC
CGGTGCTAGCTAGCACTACAGTGCCCGGTACTACATAG
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