mRNA_L-elsbetiae_contig7347.16218.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7347.16218.1
Unique NamemRNA_L-elsbetiae_contig7347.16218.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7347.16218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7347contigL-elsbetiae_contig7347:7398..8797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1401
Cds size723
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.8538146-UTR-L-elsbetiae_contig7347:7397..80741622816817.8538146-UTR-L-elsbetiae_contig7347:7397..8074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7347 7398..8074 +
1691683836.532407-UTR-L-elsbetiae_contig7347:7397..80741691683836.532407-UTR-L-elsbetiae_contig7347:7397..8074Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7347 7398..8074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.8639772-CDS-L-elsbetiae_contig7347:8074..87971622816817.8639772-CDS-L-elsbetiae_contig7347:8074..8797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 8075..8797 +
1691683836.5439475-CDS-L-elsbetiae_contig7347:8074..87971691683836.5439475-CDS-L-elsbetiae_contig7347:8074..8797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7347 8075..8797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7347.16218.1prot_L-elsbetiae_contig7347.16218.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7347 8075..8797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7347.16218.1

>prot_L-elsbetiae_contig7347.16218.1 ID=prot_L-elsbetiae_contig7347.16218.1|Name=mRNA_L-elsbetiae_contig7347.16218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MSQDTLAGEGKASLECKQYTRSLISHAQFSAIVAKYSCAGDSSAKGGCAT
ASPIGGGHAVPPMSHSMPLAITSVFLCQSHQLLRLGLLQVATRNLFDSRR
AMWYSSACRWHWLKKGRKRRLQAALEVLCADVRVHVGCCAPSLPASINRA
QKYVSVKPLGESVGTTGWKPKPLSWLGCLLWRKWHVAMLHKKQNVMKVCQ
MSADNNQNAHLKNESRPTRCTENNENAWMPRKRSISSDLIT
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mRNA from alignment at L-elsbetiae_contig7347:7398..8797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7347.16218.1 ID=mRNA_L-elsbetiae_contig7347.16218.1|Name=mRNA_L-elsbetiae_contig7347.16218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1400bp|location=Sequence derived from alignment at L-elsbetiae_contig7347:7398..8797+ (Laminarionema elsbetiae ELsaHSoW15)
GCCACGGGGTTGCGTCGTAAAACATTATCTGCCCAATTCTGGTGATAATA
ATGTCGGGTAGGGTTAACCCCTAACCCGATTTAGCCACATACTCCTATTT
ATCTTGAACATGTCACTCTCTCCGCCGCGAAAGCGACAGGGCGAGAAACC
GAGTGGTCCTCCTCGCCGGCATTCGTACGTATCCCCCTCCGGGCGCTCCC
ACTTGCCCAGGCCAACCACGGCGATTGTTACAACTGGAACAAAATCGTAG
CGTTTGGACGAGCGGCCAGCCTTTTAAAAAACACGTACATAGTATAAATA
CCCCCAAATCGCGCATGTCGCGAGAGGAAACTCATAGCAACCAAACAGGC
ACAGATCTGACGAGGAACACGCCCTTCAGCTCTGCCATGCAGCGGCATAC
ATCAGCATACCCGGAAAAGTGTTTCGGGACAGGCGGGCCGGGCTGATCCA
CGCCGGGAAAGGCCGGCAGGCAAAGCTGGCTTCCCAAAACTCTTGCTGGC
ACATGTTTTGCGACGTTCCAGCCCCTCCGCATGCCGTCTCCCCTAACTCT
ACGATTTCGCTTGAACGTAGCTCTTATTTCCACACGACAACAAGGCAGAC
ACATGTTGGGTCTCGGGAAATTCGTGAAACAGCCGCGCAATCTACGCAGG
CACATCTAGACCTCGGTTATCAGCGCCATGTCACAAGACACCCTGGCAGG
GGAGGGGAAGGCGTCGCTTGAATGCAAACAATACACCCGCTCTCTCATCT
CCCATGCTCAGTTTTCGGCGATAGTGGCAAAATATAGCTGTGCGGGTGAT
AGCAGTGCCAAGGGTGGATGCGCGACAGCATCCCCAATTGGGGGGGGGCA
CGCCGTGCCGCCGATGTCGCACAGCATGCCTCTAGCCATCACGTCAGTCT
TTTTGTGCCAGTCGCACCAACTGCTGCGCCTCGGCCTTCTTCAAGTGGCT
ACACGGAACCTATTTGATTCGCGACGAGCTATGTGGTATAGCTCGGCTTG
TCGTTGGCATTGGCTCAAGAAAGGCCGGAAAAGGAGACTCCAGGCGGCCC
TCGAGGTCCTCTGCGCAGATGTTAGAGTTCACGTGGGCTGCTGTGCTCCC
TCGCTACCAGCCAGCATCAATAGAGCCCAAAAATATGTTTCGGTGAAACC
CCTGGGCGAGAGTGTGGGCACAACGGGTTGGAAGCCCAAGCCGCTTAGTT
GGTTGGGCTGCTTGCTGTGGCGAAAATGGCACGTTGCGATGCTCCACAAA
AAACAGAACGTCATGAAAGTGTGCCAGATGTCGGCAGATAACAACCAAAA
TGCTCATCTGAAAAACGAGTCCCGGCCGACAAGATGCACTGAAAACAACG
AAAACGCTTGGATGCCCCGAAAACGATCGATTTCTAGCGATTTGATTACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7347:7398..8797+

>mRNA_L-elsbetiae_contig7347.16218.1 ID=mRNA_L-elsbetiae_contig7347.16218.1|Name=mRNA_L-elsbetiae_contig7347.16218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig7347:7398..8797+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCACAAGACACCCTGGCAGGGGAGGGGAAGGCGTCGCTTGAATGCAA
ACAATACACCCGCTCTCTCATCTCCCATGCTCAGTTTTCGGCGATAGTGG
CAAAATATAGCTGTGCGGGTGATAGCAGTGCCAAGGGTGGATGCGCGACA
GCATCCCCAATTGGGGGGGGGCACGCCGTGCCGCCGATGTCGCACAGCAT
GCCTCTAGCCATCACGTCAGTCTTTTTGTGCCAGTCGCACCAACTGCTGC
GCCTCGGCCTTCTTCAAGTGGCTACACGGAACCTATTTGATTCGCGACGA
GCTATGTGGTATAGCTCGGCTTGTCGTTGGCATTGGCTCAAGAAAGGCCG
GAAAAGGAGACTCCAGGCGGCCCTCGAGGTCCTCTGCGCAGATGTTAGAG
TTCACGTGGGCTGCTGTGCTCCCTCGCTACCAGCCAGCATCAATAGAGCC
CAAAAATATGTTTCGGTGAAACCCCTGGGCGAGAGTGTGGGCACAACGGG
TTGGAAGCCCAAGCCGCTTAGTTGGTTGGGCTGCTTGCTGTGGCGAAAAT
GGCACGTTGCGATGCTCCACAAAAAACAGAACGTCATGAAAGTGTGCCAG
ATGTCGGCAGATAACAACCAAAATGCTCATCTGAAAAACGAGTCCCGGCC
GACAAGATGCACTGAAAACAACGAAAACGCTTGGATGCCCCGAAAACGAT
CGATTTCTAGCGATTTGATTACAATGTCACAAGACACCCTGGCAGGGGAG
GGGAAGGCGTCGCTTGAATGCAAACAATACACCCGCTCTCTCATCTCCCA
TGCTCAGTTTTCGGCGATAGTGGCAAAATATAGCTGTGCGGGTGATAGCA
GTGCCAAGGGTGGATGCGCGACAGCATCCCCAATTGGGGGGGGGCACGCC
GTGCCGCCGATGTCGCACAGCATGCCTCTAGCCATCACGTCAGTCTTTTT
GTGCCAGTCGCACCAACTGCTGCGCCTCGGCCTTCTTCAAGTGGCTACAC
GGAACCTATTTGATTCGCGACGAGCTATGTGGTATAGCTCGGCTTGTCGT
TGGCATTGGCTCAAGAAAGGCCGGAAAAGGAGACTCCAGGCGGCCCTCGA
GGTCCTCTGCGCAGATGTTAGAGTTCACGTGGGCTGCTGTGCTCCCTCGC
TACCAGCCAGCATCAATAGAGCCCAAAAATATGTTTCGGTGAAACCCCTG
GGCGAGAGTGTGGGCACAACGGGTTGGAAGCCCAAGCCGCTTAGTTGGTT
GGGCTGCTTGCTGTGGCGAAAATGGCACGTTGCGATGCTCCACAAAAAAC
AGAACGTCATGAAAGTGTGCCAGATGTCGGCAGATAACAACCAAAATGCT
CATCTGAAAAACGAGTCCCGGCCGACAAGATGCACTGAAAACAACGAAAA
CGCTTGGATGCCCCGAAAACGATCGATTTCTAGCGATTTGATTACA
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