mRNA_L-elsbetiae_contig7334.16207.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7334.16207.1
Unique NamemRNA_L-elsbetiae_contig7334.16207.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7334.16207.1 vs. uniprot
Match: Q8QN73_ESV1K (EsV-1-217 n=2 Tax=root TaxID=1 RepID=Q8QN73_ESV1K)

HSP 1 Score: 52.8 bits (125), Expect = 7.100e-5
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  178 CKGATLGDLHHVMHLAVPEVREMIYFTSKDYSDRRQAMISMWYNLRKHLLFCNKKHFESSKNK 366
            C    L  +   M  AVP   EM   TS  +S RR+ M S W +LRK+L+ C+KK+FES+K K
Sbjct:  107 CTDTNLMAIRQAMMAAVPTALEMRGLTSAAFSRRRETMSSTWTSLRKYLVACHKKNFESAKKK 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7334.16207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN73_ESV1K7.100e-544.44EsV-1-217 n=2 Tax=root TaxID=1 RepID=Q8QN73_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7334contigL-elsbetiae_contig7334:609..1226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size620
Cds size603
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.8016365-UTR-L-elsbetiae_contig7334:608..6231622816816.8016365-UTR-L-elsbetiae_contig7334:608..623Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7334 609..623 +
1691683835.7777023-UTR-L-elsbetiae_contig7334:608..6231691683835.7777023-UTR-L-elsbetiae_contig7334:608..623Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7334 609..623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.8141603-CDS-L-elsbetiae_contig7334:623..12261622816816.8141603-CDS-L-elsbetiae_contig7334:623..1226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7334 624..1226 +
1691683835.7881348-CDS-L-elsbetiae_contig7334:623..12261691683835.7881348-CDS-L-elsbetiae_contig7334:623..1226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7334 624..1226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7334.16207.1prot_L-elsbetiae_contig7334.16207.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7334 624..1226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7334.16207.1

>prot_L-elsbetiae_contig7334.16207.1 ID=prot_L-elsbetiae_contig7334.16207.1|Name=mRNA_L-elsbetiae_contig7334.16207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MALKQKAREEKEKNKAGKKEMNEQKKINSQLKKELDIKNAREKKANQEKT
KNAVCKGATLGDLHHVMHLAVPEVREMIYFTSKDYSDRRQAMISMWYNLR
KHLLFCNKKHFESSKNKTPVTPTKKKRITPIPVGPTKTKKRITPIPVGPT
KKKKRITPIPVGPTKKKKRITPIPVGPNEKKTVWLNAVSPSNKAFQYNPV
Q
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mRNA from alignment at L-elsbetiae_contig7334:609..1226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7334.16207.1 ID=mRNA_L-elsbetiae_contig7334.16207.1|Name=mRNA_L-elsbetiae_contig7334.16207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig7334:609..1226+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGAGGCAGAAAAAATGGCGTTGAAGCAGAAAGCTCGAGAAGAGAAGGA
AAAAAACAAAGCAGGTAAAAAGGAAATGAACGAACAAAAGAAGATCAACT
CGCAGTTAAAGAAAGAATTGGACATCAAGAACGCTCGAGAGAAAAAGGCA
AACCAGGAGAAGACCAAGAATGCGGTTTGCAAGGGTGCGACCCTGGGTGA
TTTGCACCATGTGATGCATCTGGCAGTGCCCGAAGTCCGAGAAATGATAT
ATTTCACCAGCAAAGATTACTCGGATCGCAGACAGGCGATGATCTCTATG
TGGTATAATCTTAGAAAGCACCTCCTCTTTTGCAATAAGAAACACTTCGA
ATCGTCCAAGAACAAAACCCCTGTTACACCAACCAAGAAGAAAAGGATTA
CGCCTATCCCTGTTGGTCCAACCAAGACGAAGAAAAGGATTACGCCTATC
CCTGTTGGTCCAACCAAGAAGAAGAAAAGGATTACGCCTATCCCTGTTGG
TCCAACCAAGAAGAAAAAAAGGATTACGCCTATCCCTGTTGGTCCAAACG
AGAAGAAAACGGTTTGGCTTAATGCTGTTAGTCCAAGCAACAAGGCATTT
CAATATAATCCCGTTCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7334:609..1226+

>mRNA_L-elsbetiae_contig7334.16207.1 ID=mRNA_L-elsbetiae_contig7334.16207.1|Name=mRNA_L-elsbetiae_contig7334.16207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig7334:609..1226+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTTGAAGCAGAAAGCTCGAGAAGAGAAGGAAAAAAACAAAGCAGG
TAAAAAGGAAATGAACGAACAAAAGAAGATCAACTCGCAGTTAAAGAAAG
AATTGGACATCAAGAACGCTCGAGAGAAAAAGGCAAACCAGGAGAAGACC
AAGAATGCGGTTTGCAAGGGTGCGACCCTGGGTGATTTGCACCATGTGAT
GCATCTGGCAGTGCCCGAAGTCCGAGAAATGATATATTTCACCAGCAAAG
ATTACTCGGATCGCAGACAGGCGATGATCTCTATGTGGTATAATCTTAGA
AAGCACCTCCTCTTTTGCAATAAGAAACACTTCGAATCGTCCAAGAACAA
AACCCCTGTTACACCAACCAAGAAGAAAAGGATTACGCCTATCCCTGTTG
GTCCAACCAAGACGAAGAAAAGGATTACGCCTATCCCTGTTGGTCCAACC
AAGAAGAAGAAAAGGATTACGCCTATCCCTGTTGGTCCAACCAAGAAGAA
AAAAAGGATTACGCCTATCCCTGTTGGTCCAAACGAGAAGAAAACGGTTT
GGCTTAATGCTGTTAGTCCAAGCAACAAGGCATTTCAATATAATCCCGTT
CAAATGGCGTTGAAGCAGAAAGCTCGAGAAGAGAAGGAAAAAAACAAAGC
AGGTAAAAAGGAAATGAACGAACAAAAGAAGATCAACTCGCAGTTAAAGA
AAGAATTGGACATCAAGAACGCTCGAGAGAAAAAGGCAAACCAGGAGAAG
ACCAAGAATGCGGTTTGCAAGGGTGCGACCCTGGGTGATTTGCACCATGT
GATGCATCTGGCAGTGCCCGAAGTCCGAGAAATGATATATTTCACCAGCA
AAGATTACTCGGATCGCAGACAGGCGATGATCTCTATGTGGTATAATCTT
AGAAAGCACCTCCTCTTTTGCAATAAGAAACACTTCGAATCGTCCAAGAA
CAAAACCCCTGTTACACCAACCAAGAAGAAAAGGATTACGCCTATCCCTG
TTGGTCCAACCAAGACGAAGAAAAGGATTACGCCTATCCCTGTTGGTCCA
ACCAAGAAGAAGAAAAGGATTACGCCTATCCCTGTTGGTCCAACCAAGAA
GAAAAAAAGGATTACGCCTATCCCTGTTGGTCCAAACGAGAAGAAAACGG
TTTGGCTTAATGCTGTTAGTCCAAGCAACAAGGCATTTCAATATAATCCC
GTTCAA
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