mRNA_L-elsbetiae_contig7329.16201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A6H5KNW1_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW1_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.800e-34 Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDALFETLT REHLALYA+IK +AAV+QKIEEMGL+QYADRPAGGYSGGNKRKLSVA+AMIGDPQ+ Sbjct: 162 GYCPQFDALFETLTGREHLALYASIKGIPADKRSAAVDQKIEEMGLKQYADRPAGGYSGGNKRKLSVAMAMIGDPQI 238
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI) HSP 1 Score: 129 bits (325), Expect = 3.120e-33 Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDALFETLT REHLALYA+IK +AAV+QKIEEMGL+QYADRPAGGYSGGNKRKLSVA+AMIGDPQ+ Sbjct: 1624 GYCPQFDALFETLTGREHLALYASIKGIPADKRSAAVDQKIEEMGLKQYADRPAGGYSGGNKRKLSVAMAMIGDPQI 1700
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE) HSP 1 Score: 126 bits (316), Expect = 5.070e-32 Identity = 63/77 (81.82%), Postives = 67/77 (87.01%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDALFETLT REHLALYAAIK +AAV QKIEEMGL +YA+RPAGGYSGGNKRKLSVA+AMIGDPQV Sbjct: 727 GYCPQFDALFETLTGREHLALYAAIKGIPADKRSAAVNQKIEEMGLTRYAERPAGGYSGGNKRKLSVAMAMIGDPQV 803
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI) HSP 1 Score: 125 bits (315), Expect = 6.980e-32 Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDALFETLT REHLALYAAIK +AAV QKIEEMGL +YA+RPAGGYSGGNKRKLSVA+AMIGDPQ+ Sbjct: 1644 GYCPQFDALFETLTGREHLALYAAIKGIPADKRSAAVNQKIEEMGLTRYAERPAGGYSGGNKRKLSVAMAMIGDPQI 1720
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI) HSP 1 Score: 107 bits (267), Expect = 2.120e-25 Identity = 54/77 (70.13%), Postives = 58/77 (75.32%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDALFETLT REHL LYAAIK A I ++GL QYAD+ AG YSGGNKRKLSVAVAMIGDPQ+ Sbjct: 1646 GYCPQFDALFETLTGREHLRLYAAIKGIPAAEVEEAASTMITDLGLGQYADKLAGSYSGGNKRKLSVAVAMIGDPQI 1722
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A835YSC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC0_9STRA) HSP 1 Score: 105 bits (263), Expect = 7.390e-25 Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDALFE++TAREHL +YA IK AA E K+ EM L QYAD+ AGGYSGGNKRKLSVAVAM+G P++ Sbjct: 2001 GYCPQFDALFESMTAREHLEMYARIKGLRESDVKAAAEAKMTEMDLLQYADKLAGGYSGGNKRKLSVAVAMLGGPEI 2077
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A6H5K0F9_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F9_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 2.180e-24 Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDALFETLT REHL LYAAIKA + I ++GL AD+ AG YSGGNKRKLSVAVAMIG PQ+ Sbjct: 27 GYCPQFDALFETLTGREHLRLYAAIKAAS---------TMITDLGLGHNADKLAGSYSGGNKRKLSVAVAMIGHPQI 94
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A0V0QXE0_PSEPJ (p-loop containing nucleoside triphosphate hydrolase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QXE0_PSEPJ) HSP 1 Score: 102 bits (253), Expect = 1.650e-23 Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDAL E LT REHL LYAAIK L + QKIEEM L+++ PAG YSGGNKRKLSVAVAMIG+P V Sbjct: 1404 GYCPQFDALLENLTTREHLELYAAIKGIPSHLREKLITQKIEEMNLKKFEHIPAGTYSGGNKRKLSVAVAMIGNPPV 1480
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.880e-23 Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDALFETLT REHL LYAAIKA + I ++GL YAD+ AG YSGGNKRKLSVAVAMIG+PQ+ Sbjct: 227 GYCPQFDALFETLTGREHLRLYAAIKAAS---------TMITDLGLGHYADKLAGSYSGGNKRKLSVAVAMIGNPQI 294
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Match: Q24IL8_TETTS (ABC transporter family protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q24IL8_TETTS) HSP 1 Score: 100 bits (250), Expect = 4.210e-23 Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 3 Query: 3 GYCPQFDALFETLTAREHLALYAAIKARAGKLCTAAVEQKIEEMGLRQYADRPAGGYSGGNKRKLSVAVAMIGDPQV 233 GYCPQFDAL + LT+REHL LYAAIK L VEQK++EM LRQ+ + AG YSGGNKRKLSVA+AM+G+P + Sbjct: 1365 GYCPQFDALLDNLTSREHLELYAAIKGIPSDLIPQLVEQKLDEMNLRQFENICAGTYSGGNKRKLSVAIAMLGNPPI 1441 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7329.16201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7329.16201.1 >prot_L-elsbetiae_contig7329.16201.1 ID=prot_L-elsbetiae_contig7329.16201.1|Name=mRNA_L-elsbetiae_contig7329.16201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=47bp WGTAPNSTHCSRRSRPESILRSTRRSRHVPANYAPRPSSRRSKRWA*back to top mRNA from alignment at L-elsbetiae_contig7329:7131..7533- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7329.16201.1 ID=mRNA_L-elsbetiae_contig7329.16201.1|Name=mRNA_L-elsbetiae_contig7329.16201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=403bp|location=Sequence derived from alignment at L-elsbetiae_contig7329:7131..7533- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7329:7131..7533- >mRNA_L-elsbetiae_contig7329.16201.1 ID=mRNA_L-elsbetiae_contig7329.16201.1|Name=mRNA_L-elsbetiae_contig7329.16201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=282bp|location=Sequence derived from alignment at L-elsbetiae_contig7329:7131..7533- (Laminarionema elsbetiae ELsaHSoW15)back to top |