mRNA_L-elsbetiae_contig732.16195.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig732.16195.1
Unique NamemRNA_L-elsbetiae_contig732.16195.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig732.16195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig732contigL-elsbetiae_contig732:26873..27792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size318
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig732.16195.1prot_L-elsbetiae_contig732.16195.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig732 26873..27792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.469207-CDS-L-elsbetiae_contig732:26872..269661622816815.469207-CDS-L-elsbetiae_contig732:26872..26966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig732 26873..26966 +
1691683834.731385-CDS-L-elsbetiae_contig732:26872..269661691683834.731385-CDS-L-elsbetiae_contig732:26872..26966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig732 26873..26966 +
1622816815.480451-CDS-L-elsbetiae_contig732:27349..275001622816815.480451-CDS-L-elsbetiae_contig732:27349..27500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig732 27350..27500 +
1691683834.7408957-CDS-L-elsbetiae_contig732:27349..275001691683834.7408957-CDS-L-elsbetiae_contig732:27349..27500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig732 27350..27500 +
1622816815.4915922-CDS-L-elsbetiae_contig732:27719..277921622816815.4915922-CDS-L-elsbetiae_contig732:27719..27792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig732 27720..27792 +
1691683834.7586644-CDS-L-elsbetiae_contig732:27719..277921691683834.7586644-CDS-L-elsbetiae_contig732:27719..27792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig732 27720..27792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig732.16195.1

>prot_L-elsbetiae_contig732.16195.1 ID=prot_L-elsbetiae_contig732.16195.1|Name=mRNA_L-elsbetiae_contig732.16195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
PPSSSHQVPSHRTHPSGHPRTKARTGGLEPLAMTRTTMAAAAAAAVAAAC
LANQADGHTLQTCPFSRQYANSPALDVYPNGEEQTDPEFCPPCYNSGGEA
GADNVR
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mRNA from alignment at L-elsbetiae_contig732:26873..27792+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig732.16195.1 ID=mRNA_L-elsbetiae_contig732.16195.1|Name=mRNA_L-elsbetiae_contig732.16195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=920bp|location=Sequence derived from alignment at L-elsbetiae_contig732:26873..27792+ (Laminarionema elsbetiae ELsaHSoW15)
CCACCCTCCAGCTCTCACCAGGTTCCCTCCCATCGTACCCATCCTTCGGG
TCATCCTCGCACGAAAGCCCGAACTGGTGGGCTAGAACCCTTAGGTACTT
ACCTTTGGTAATTACATTCAAAGTTGCGCAGCGAATAAGCGGGGCATCGG
CAGAGAACAAGATCGCCGTGTTCGCGCTAATCGTTTGAACCCGGCGTTTG
TAGCAGTCCACCACACGTATACCGGCATTCAAACGGGTTGGTGGAAACCT
ACGAAAACAAATTAGTTATGTTCCATTTGCACGAAAAATAACTGCATTGC
TGTTGTGTGTTGCACTGCGTGTACGACGCGGCTGCCGAAAACGATGCGCT
GCTCAAAATTTGCCCTGCTCTAAATGGTCCTCGTCTGAGTTTACCTATGT
AGAACGCTTTACACCCCATGATTTATCCTAACCCTCCCCACGCCATCTTG
TCTCCCTAACCCCGCAACCCGCCGCAGCCATGACTCGAACTACGATGGCG
GCGGCGGCCGCGGCTGCTGTGGCTGCAGCTTGTCTGGCGAACCAGGCTGA
CGGGCACACGCTGCAGACATGTCCGTTCAGCAGGCAATACGCGAACTCTC
CGGCGCTTGACGTATACCCCAACGGAGAGTAAGTAACGCTGTAAGACAAC
CGGGGTATAGCACCCTACTATGGTATCGTACAAGTCGTGAGCTGATTTAC
CAAGTTGATTGAAAACGCCGCACAAGTACATCCAGCTGTACACAAAAATG
AAGGTAGATAGTTTAGTCACCTCCAGCTTGAACATGCCACATCCGTTTGT
CCCATGCTTTCCCCGACGCTCGGCCGTGCGCGGTTCACGGAACACAGGGA
ACAAACCGACCCTGAGTTCTGCCCTCCGTGCTACAACTCCGGCGGGGAGG
CGGGAGCTGACAATGTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig732:26873..27792+

>mRNA_L-elsbetiae_contig732.16195.1 ID=mRNA_L-elsbetiae_contig732.16195.1|Name=mRNA_L-elsbetiae_contig732.16195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig732:26873..27792+ (Laminarionema elsbetiae ELsaHSoW15)
CCACCCTCCAGCTCTCACCAGGTTCCCTCCCATCGTACCCATCCTTCGGG
TCATCCTCGCACGAAAGCCCGAACTGGTGGGCTAGAACCCTTAGCCACCC
TCCAGCTCTCACCAGGTTCCCTCCCATCGTACCCATCCTTCGGGTCATCC
TCGCACGAAAGCCCGAACTGGTGGGCTAGAACCCTTAGCCATGACTCGAA
CTACGATGGCGGCGGCGGCCGCGGCTGCTGTGGCTGCAGCTTGTCTGGCG
AACCAGGCTGACGGGCACACGCTGCAGACATGTCCGTTCAGCAGGCAATA
CGCGAACTCTCCGGCGCTTGACGTATACCCCAACGGAGACCATGACTCGA
ACTACGATGGCGGCGGCGGCCGCGGCTGCTGTGGCTGCAGCTTGTCTGGC
GAACCAGGCTGACGGGCACACGCTGCAGACATGTCCGTTCAGCAGGCAAT
ACGCGAACTCTCCGGCGCTTGACGTATACCCCAACGGAGAGGAACAAACC
GACCCTGAGTTCTGCCCTCCGTGCTACAACTCCGGCGGGGAGGCGGGAGC
TGACAATGTGAGGGGAACAAACCGACCCTGAGTTCTGCCCTCCGTGCTAC
AACTCCGGCGGGGAGGCGGGAGCTGACAATGTGAGG
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