mRNA_L-elsbetiae_contig7319.16192.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7319.16192.1 vs. uniprot
Match: D7G5G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G6_ECTSI) HSP 1 Score: 237 bits (604), Expect = 2.830e-64 Identity = 213/528 (40.34%), Postives = 259/528 (49.05%), Query Frame = 1 Query: 1 NRWEVEEILAQEVARRRDDPTPAEAAEAALEAIVTAMERKEDRTRRRAEHNARALERARWHPSAEGFLMQRLTVSPSATAIATSSAKEPEGGPETKMVLTDADFVDMKLTQGGSAIPWGQEAAAPEPPPAGAKSGGPFTLGRTGRSLAAAFSTRLPARLLRHPRSWGATLLPSGTAGRPSLPSLGALRALGGARSMGDLKRELAAAGSGALTSVGKKEHEHEAVGAAXXXXXXXXXXXXXXXGLALEKTGGKKRNQKEKGTAGGKAAQAE-------DGSSPXXXXXXXXXXXXXXXXXXXXXXXXVDTAAARAPASSVALVSGRRGSSRSPTKIITGSRAARDGRLSPSSRGSXXXXXXXXXXXXXINRSSALVATAAA-ASVA-GGLEDRAGTARTGNGKNRGEHARREGGLSGPLALTAVASLDEQVRGLGAKLALKIEGGSRPALAASRATGTGARGGKARLMAAAAAGKIAGFPSK-----RPAXXXXXXXXXXXXXXDVSTVTIELACRPPPRNLLTTVRVK 1542 +RW+VE+ILAQE RR +DPTPAEAA+ A+E+I+TA+ER+ED+ RRR EHN RALERARWHPS G+LMQRL VS S T IAT+ A E E GPE KM+LTDADF+D+ LTQG R LA A LPARLL+ W +G P LP+ +LRAL G RS+GDLKREL A G+ A + ++ +A+ G AL + +K K TA A A DG +P V AAA A S + + TG R+ D + G XXXXXX +S + V TA ASV GG++D G A TGN + + E G P LTAVA LDEQVRG GAKLALKIE G L RA A K RL+AA GK G P+K + DVST+TIELAC PPP NLLTTV+V+ Sbjct: 602 HRWKVEQILAQEALRREEDPTPAEAAQDAMESIITAIERREDKKRRRREHNIRALERARWHPSTSGYLMQRLAVSASTTVIATARANELEEGPEGKMILTDADFLDINLTQG--------------------------------RGLATALHFSLPARLLQPRTKW------AGLLAAPDLPTPPSLRALAGVRSLGDLKRELTALGTAARAATATPANQEQAMATEGGGTIG---------GNALSSMKARAWKRKIKATAAEPADTASKDEEALVDGDTPVPATAVAVRTQNDETSTALGRPDGVAPAAAPPLADSPPTRNAEPPAEHDGATAATGKRSRDDHNKPSNDGGDXXXXXXSAKGSFATTKSPSGVTTAVRPASVPNGGVKDSKGQAGTGN-EEEESRQQSEKGPPSPRVLTAVAPLDEQVRGFGAKLALKIEIGD---LDPKRAGDAVAAMAKKRLVAA---GKAMGLPNKVATTTKVPEKPGRVLTPQPPPPDVSTITIELACTPPPFNLLTTVKVE 1075
BLAST of mRNA_L-elsbetiae_contig7319.16192.1 vs. uniprot
Match: A0A6H5KDY1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDY1_9PHAE) HSP 1 Score: 219 bits (557), Expect = 4.200e-58 Identity = 207/530 (39.06%), Postives = 249/530 (46.98%), Query Frame = 1 Query: 7 WEVEEILAQEVARRRDDPTPAEAAEAALEAIVTAMERKEDRTRRRAEHNARALERARWHPSAEGFLMQRLTVSPSATAIATSSAKEPEGGPETKMVLTDADFVDMKLTQGGSAIPWGQEAAAPEPPPAGAKSGGPFTLGRTGRSLAAAFSTRLPARLLRHPRSWGATLLPSGTAGRPSLPSLGALRALGGARSMGDLKRELAAAGSGALTSVGKKEHEHEAVGAAXXXXXXXXXXXXXXXGLALEKTGGKKRNQKEKGTAGGKAAQAE--------DGSSPXXXXXXXXXXXXXXXXXXXXXXXXVDTAAARAPASSVALVSGRRGSSRSPTKIITGSRAARDGRLSPSS----RGSXXXXXXXXXXXXXINRSSALVATAAAASVA-GGLEDRAGTARTGNGKNRGEHARREGGLSGPLALTAVASLDEQVRGLGAKLALKIEGGSRPALAASRATGTGARGGKARLMAAAAAGKIAGFPSK-----RPAXXXXXXXXXXXXXXDVSTVTIELACRPPPRNLLTTVRVK 1542 W+VE+ILA+E RR DPTPAEAA+ A+E+I+TA+ER+ED+ RRR EHN RALERARWHPS G+LMQRL VS S TAIA + A E E GPE KM+LTDADF+DM LTQG R LA LP +L + PR+ GA L + PS G RS+GDLKREL A G+ T+ ++ +A+ G AL + +KEK T A A DG +P XXX D+ AA APA S + + TG R+ RD PS+ GS SA ASV GG +D G A TGN + ++G S P LTAVA LDEQVRG GAKLALKIE G L RA A K RL AAAGK G P+K + DVST+TIELAC PPP NLLTTV+V+ Sbjct: 489 WKVEQILAREALRREKDPTPAEAAQDAMESIITAIERREDKKRRRQEHNIRALERARWHPSTSGYLMQRLAVSASTTAIAAARANELEEGPEGKMILTDADFLDMNLTQG--------------------------------RGLATPVHFNLPTKLFQ-PRTKGARLPAA-----PSXXXXXXXXXXAGVRSLGDLKRELTALGTATRTATATPANQEQAM---------TTEGGGTVGGNALSSMKTRAWKRKEKATVAESADTASKAKGKALADGGTPVPATXXXVRTENDETSTALGRQ---DSVAAPAPADSPPTRNAESRAEHDGATAATGKRS-RDDHNKPSNDRGDSGSSSTSNIAKGAFASTKAPSAATTAVRPASVPNGGAKDSKGQAGTGNEEEESRQQYKKGPPS-PRVLTAVAPLDEQVRGFGAKLALKIETGD---LDPKRAGDAVAAMAKKRL---AAAGKAMGLPNKVATTTKVPEKPGRVLRPQPPPPDVSTITIELACTPPPFNLLTTVKVE 960 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7319.16192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7319.16192.1 >prot_L-elsbetiae_contig7319.16192.1 ID=prot_L-elsbetiae_contig7319.16192.1|Name=mRNA_L-elsbetiae_contig7319.16192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=514bp NRWEVEEILAQEVARRRDDPTPAEAAEAALEAIVTAMERKEDRTRRRAEHback to top mRNA from alignment at L-elsbetiae_contig7319:1908..9569+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7319.16192.1 ID=mRNA_L-elsbetiae_contig7319.16192.1|Name=mRNA_L-elsbetiae_contig7319.16192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7662bp|location=Sequence derived from alignment at L-elsbetiae_contig7319:1908..9569+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7319:1908..9569+ >mRNA_L-elsbetiae_contig7319.16192.1 ID=mRNA_L-elsbetiae_contig7319.16192.1|Name=mRNA_L-elsbetiae_contig7319.16192.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3084bp|location=Sequence derived from alignment at L-elsbetiae_contig7319:1908..9569+ (Laminarionema elsbetiae ELsaHSoW15)back to top |