mRNA_L-elsbetiae_contig7304.16175.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7304.16175.1
Unique NamemRNA_L-elsbetiae_contig7304.16175.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7304.16175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7304contigL-elsbetiae_contig7304:6828..7409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7304.16175.1prot_L-elsbetiae_contig7304.16175.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7304 7016..7324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.9103231-UTR-L-elsbetiae_contig7304:6827..70151622816813.9103231-UTR-L-elsbetiae_contig7304:6827..7015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 6828..7015 +
1691683833.5489373-UTR-L-elsbetiae_contig7304:6827..70151691683833.5489373-UTR-L-elsbetiae_contig7304:6827..7015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 6828..7015 +
1622816813.9390242-UTR-L-elsbetiae_contig7304:7324..74091622816813.9390242-UTR-L-elsbetiae_contig7304:7324..7409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 7325..7409 +
1691683833.5694828-UTR-L-elsbetiae_contig7304:7324..74091691683833.5694828-UTR-L-elsbetiae_contig7304:7324..7409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 7325..7409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.9262776-CDS-L-elsbetiae_contig7304:7015..73241622816813.9262776-CDS-L-elsbetiae_contig7304:7015..7324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 7016..7324 +
1691683833.5599165-CDS-L-elsbetiae_contig7304:7015..73241691683833.5599165-CDS-L-elsbetiae_contig7304:7015..7324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 7016..7324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7304.16175.1

>prot_L-elsbetiae_contig7304.16175.1 ID=prot_L-elsbetiae_contig7304.16175.1|Name=mRNA_L-elsbetiae_contig7304.16175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MINVENKHSKMCAYPDCSEGPSIVAGTKGREICAERANESIVRLRSRWGS
ATSAWRYQWQREYHAASPTKSTPRGARFAFYFPSQQQGCRDTKRQSGAGH
QQ*
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mRNA from alignment at L-elsbetiae_contig7304:6828..7409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7304.16175.1 ID=mRNA_L-elsbetiae_contig7304.16175.1|Name=mRNA_L-elsbetiae_contig7304.16175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig7304:6828..7409+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGAGGCCGTCGTTTGGCGTAGCGGGAACCAAGAAGCGACAGTTCTGCA
AATAACATGCGCAGGAAGGAATGTGCAGCCTCAACAGCATGAACAGGAAG
TGCGCGCACCGGGGTTGCAGCATGCAGCCATCGTTTGGCGTAGCAGGAAC
CAAAGAGCGAGAATCTGCACGGGCATGCCAAGGAGGGGATGATCAATGTC
GAAAACAAACACAGCAAGATGTGCGCATACCCGGATTGCAGTGAGGGTCC
GTCGATCGTAGCAGGGACGAAGGGGCGAGAGATATGCGCCGAGCGTGCTA
ATGAGAGCATAGTGCGCCTGCGGAGCAGATGGGGTTCGGCGACCTCCGCA
TGGCGGTACCAGTGGCAGCGGGAGTACCACGCCGCGTCCCCTACCAAATC
AACCCCGCGCGGAGCGCGCTTCGCCTTCTACTTTCCCAGCCAACAGCAGG
GGTGTCGCGATACGAAGAGGCAGAGCGGGGCGGGTCATCAACAATGAAAA
TGGCCGGCTTCGTCCAATGCTCGCCGCGAGCTCCCCGACTCGTCCCAACC
TCCCAGGCGAAAGAAGGCGACGACACCAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7304:6828..7409+

>mRNA_L-elsbetiae_contig7304.16175.1 ID=mRNA_L-elsbetiae_contig7304.16175.1|Name=mRNA_L-elsbetiae_contig7304.16175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig7304:6828..7409+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCAATGTCGAAAACAAACACAGCAAGATGTGCGCATACCCGGATTG
CAGTGAGGGTCCGTCGATCGTAGCAGGGACGAAGGGGCGAGAGATATGCG
CCGAGCGTGCTAATGAGAGCATAGTGCGCCTGCGGAGCAGATGGGGTTCG
GCGACCTCCGCATGGCGGTACCAGTGGCAGCGGGAGTACCACGCCGCGTC
CCCTACCAAATCAACCCCGCGCGGAGCGCGCTTCGCCTTCTACTTTCCCA
GCCAACAGCAGGGGTGTCGCGATACGAAGAGGCAGAGCGGGGCGGGTCAT
CAACAATGAATGATCAATGTCGAAAACAAACACAGCAAGATGTGCGCATA
CCCGGATTGCAGTGAGGGTCCGTCGATCGTAGCAGGGACGAAGGGGCGAG
AGATATGCGCCGAGCGTGCTAATGAGAGCATAGTGCGCCTGCGGAGCAGA
TGGGGTTCGGCGACCTCCGCATGGCGGTACCAGTGGCAGCGGGAGTACCA
CGCCGCGTCCCCTACCAAATCAACCCCGCGCGGAGCGCGCTTCGCCTTCT
ACTTTCCCAGCCAACAGCAGGGGTGTCGCGATACGAAGAGGCAGAGCGGG
GCGGGTCATCAACAATGA
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