mRNA_L-elsbetiae_contig7297.16166.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7297.16166.1
Unique NamemRNA_L-elsbetiae_contig7297.16166.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: A0A6H5JJZ2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJZ2_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 2.560e-68
Identity = 107/126 (84.92%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:  862 DLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHATLATLVAEKG 1239
            DLGLAKVIK SEAGVDEFYRMSGEVGSLRYM+PEVASQ+PYNEK DVHSF VV+WELVTGWLPYAGLSP+ FMFQAVQHGQRPLMQFGWD  FK LLASCWAEDPRDRPGF+ +H TL  L+ EKG
Sbjct:  238 DLGLAKVIKHSEAGVDEFYRMSGEVGSLRYMAPEVASQYPYNEKADVHSFGVVMWELVTGWLPYAGLSPEMFMFQAVQHGQRPLMQFGWDPDFKRLLASCWAEDPRDRPGFAYIHETLEALLVEKG 363
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: D7FPH5_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH5_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.410e-67
Identity = 104/130 (80.00%), Postives = 112/130 (86.15%), Query Frame = 1 
Query:  856 QFDLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHAT--LATLVAEKG 1239
            QFDLGLAKVIK SEAGVDEFYRMSGEVGSLRYM+PEVASQ+PYNEK DVHSF VV+WELVTGWLPY GLSP+ FMFQAVQHGQRPLMQFGWD  FK LLASCWA DPRDRPGF+ +H    +   V E+G
Sbjct:    8 QFDLGLAKVIKHSEAGVDEFYRMSGEVGSLRYMAPEVASQYPYNEKGDVHSFGVVMWELVTGWLPYGGLSPEMFMFQAVQHGQRPLMQFGWDPDFKRLLASCWAGDPRDRPGFAYIHVVKEVQRRVGEEG 137
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: D7FJD0_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD0_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.370e-27
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:  862 DLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHATLATLVAE 1233
            D GLAK+I R++      Y M+GE GS RYM PEVA+  PYNEK DV SF V++WE+ +G LP+AG++ + ++ +     +RPL+Q  W + FK+LL S W +DP  RP F  +HA L+ + +E
Sbjct:  349 DFGLAKIIHRTQRCGSVKYAMTGETGSPRYMPPEVATNQPYNEKADVWSFIVIVWEMASGRLPFAGMNMEVYLDKVCNGAERPLVQNPWPADFKSLLRSSWQKDPDKRPSFREIHAVLSGMCSE 472
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: A0A7S3HAA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAA9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.920e-27
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:  859 FDLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHATL 1215
            FD GL   +K  E+  D  Y M+G  GSLRYM+PEVA + PYNEK DV+SF ++LW++    LP+ GL   +FM + V+   RP +   W   F  LL +CWA DP+ RP FS++   L
Sbjct:   68 FDFGLVTCVKTRESPTDS-YTMTGYTGSLRYMAPEVALREPYNEKVDVYSFGIMLWQMARDNLPFTGLGKTEFMQEVVRGNVRPKLDRSWPDGFSNLLTACWARDPQKRPSFSVIVIEL 185
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: A0A7S1ZVA0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVA0_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.430e-27
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 1 
Query:  862 DLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGF-SIVHATLATLVAEKG 1239
            D GLA+++K S++  +E Y MSG+ GSLRYM+PEVA   PYN+K DV+SF ++LWEL     PY G++ D+F  + V+  +RP +   W      L+  CW+ D R RP F  IV    A L  EKG
Sbjct:   84 DFGLARIVKNSDSDSNEVYHMSGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRPSFHEIVERLDAMLSKEKG 210
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: A0A6H5LAW2_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAW2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.430e-26
Identity = 55/132 (41.67%), Postives = 81/132 (61.36%), Query Frame = 1 
Query:  847 RPRQFDLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHATLATLVAEKGT 1242
            R + FD GLAK+++R    + + Y M+GE GS RYM PEVA Q PYNEK DV+SF ++LWE+++   P+ GL+  +F+   ++ G+RP +Q  W +  + L+  CW ED   RP F  V  TL  +   + T
Sbjct:  227 RLKLFDFGLAKIVRRRGGRLSQRYEMTGETGSTRYMCPEVAMQLPYNEKADVYSFGLILWEMLSLRRPFEGLNRKEFVQSVIKGGRRPPLQQEWSAALRELMRRCWDEDMDTRPEFEEVEDTLLQITHREAT 358
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: A0A835Z8J1_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.020e-26
Identity = 61/124 (49.19%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:  862 DLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHATLATLVAE 1233
            DLGLAK + RSE   D+ + M+GE GS RYM+PEVA   PYNEK DVHS+ +VLWE+ T   PY G++ DQF    V+   RP +   W   F  LLA+CWAED + RP F+ V   L  ++ E
Sbjct:  395 DLGLAKAVPRSELQ-DQTFAMTGETGSTRYMAPEVAESRPYNEKVDVHSYGMVLWEMATLRKPYDGMARDQFYSAVVRGHVRPPLNKRWPKEFSDLLAACWAEDFKARPSFADVCNRLQEMLQE 517
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: A0A835Z8G5_9STRA (Serine/threonine-protein kinase CTR1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.310e-25
Identity = 63/135 (46.67%), Postives = 82/135 (60.74%), Query Frame = 1 
Query:  862 DLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHATLATLVA---EKGTPSVAQ 1257
            DLGLAK I RSE   D  + M+GE GS RYM+PEVA   PYNEK DVHS+++VLWE+ T   PY G++ DQF    V+   RP +   W   F  LL++CW+ED R RP F+ +   L  ++    E  TP  +Q
Sbjct:  457 DLGLAKAIPRSEVQ-DAAFHMTGETGSTRYMAPEVAESRPYNEKVDVHSYSMVLWEMATLRKPYDGMARDQFYSAVVRGHVRPPLNKRWPKEFSDLLSACWSEDWRARPSFADICNRLQEMLQDADEHHTPKTSQ 590
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: A0A6H5JUQ3_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUQ3_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 3.410e-25
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 1 
Query:  862 DLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHATLATLVAE 1233
            DLGL+KV+ +SE   +  + M+GE GS+RYM+PEVA   PYNEK DV+SF ++LWE+ T   P+ G+  D+F+ Q ++   RP +   W   +  L+ SCWAEDP  RP F+ V   L  ++ +
Sbjct:  436 DLGLSKVVSKSEVD-NTMFNMTGETGSVRYMAPEVAESRPYNEKVDVYSFGIILWEMSTLKKPFDGMGHDRFLSQVIRGSHRPPVHKKWPKPWSELMQSCWAEDPSKRPSFAKVGDLLQGMLQD 558
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BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Match: A0A6V2JN82_9STRA (Hypothetical protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2JN82_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.710e-24
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = 1 
Query:  862 DLGLAKVIKRSEAGVDEFYRMSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPDQFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGF-SIVHATLATLVAEKG 1239
            D GLA+++K S++  ++ Y MSG+ GSLRYM+PEVA   PYN+K DV+SF ++LWEL     PY G++ D+F  + V+  +RP +   W      L+  CW+ D R RP F  IV    A L  EKG
Sbjct:  526 DFGLARIVKNSDSDSNDVYHMSGQTGSLRYMAPEVAKSLPYNQKADVYSFGIILWELNAYKKPYEGMNKDEFYMRVVEGKERPPINKKWPEELVQLMQECWSFDARLRPSFHEIVERLDAMLSKEKG 652
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7297.16166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJZ2_9PHAE2.560e-6884.92Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FPH5_ECTSI2.410e-6780.00Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FJD0_ECTSI1.370e-2745.97Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S3HAA9_9STRA1.920e-2745.38Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1ZVA0_9STRA3.430e-2744.88Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6H5LAW2_9PHAE4.430e-2641.67Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835Z8J1_9STRA5.020e-2649.19Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]
A0A835Z8G5_9STRA1.310e-2546.67Serine/threonine-protein kinase CTR1 n=1 Tax=Tribo... [more]
A0A6H5JUQ3_9PHAE3.410e-2543.55Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6V2JN82_9STRA1.710e-2444.09Hypothetical protein n=6 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7297contigL-elsbetiae_contig7297:672..5606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.6e-43
Seed eggNOG ortholog2880.D7FPH5
KEGG koko:K14304
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005795,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006914,GO:0006928,GO:0006935,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007528,GO:0008088,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009894,GO:0009987,GO:0009991,GO:0010008,GO:0010506,GO:0010721,GO:0010769,GO:0010771,GO:0010941,GO:0010970,GO:0010975,GO:0010977,GO:0012505,GO:0016020,GO:0016043,GO:0016049,GO:0016192,GO:0016197,GO:0016241,GO:0016301,GO:0016310,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0017016,GO:0017137,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030424,GO:0030425,GO:0030705,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031345,GO:0031410,GO:0031594,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032418,GO:0032501,GO:0032502,GO:0032879,GO:0032886,GO:0032989,GO:0032990,GO:0033036,GO:0033043,GO:0033267,GO:0033554,GO:0034613,GO:0034976,GO:0035556,GO:0036211,GO:0036465,GO:0036477,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042594,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043195,GO:0043198,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046907,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048489,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048675,GO:0048699,GO:0048731,GO:0048812,GO:0048814,GO:0048846,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050896,GO:0051020,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051493,GO:0051640,GO:0051641,GO:0051645,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051683,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0060341,GO:0060548,GO:0060560,GO:0060627,GO:0061174,GO:0061564,GO:0061845,GO:0061919,GO:0065007,GO:0065008,GO:0070507,GO:0070727,GO:0071212,GO:0071496,GO:0071704,GO:0071840,GO:0090128,GO:0097447,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098693,GO:0098791,GO:0098793,GO:0098805,GO:0098852,GO:0099003,GO:0099111,GO:0099174,GO:0099504,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0140096,GO:0150034,GO:1900242,GO:1901214,GO:1901215,GO:1901564,GO:1902115,GO:1902284,GO:1903421,GO:1990033,GO:1990138,GO:2000026,GO:2000171,GO:2000331,GO:2000785
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons5
Model size1448
Cds size504
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.561033-UTR-L-elsbetiae_contig7297:671..15331622816812.561033-UTR-L-elsbetiae_contig7297:671..1533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7297 672..1533 +
1691683832.341617-UTR-L-elsbetiae_contig7297:671..15331691683832.341617-UTR-L-elsbetiae_contig7297:671..1533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7297 672..1533 +
1622816812.5725446-UTR-L-elsbetiae_contig7297:2149..22081622816812.5725446-UTR-L-elsbetiae_contig7297:2149..2208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7297 2150..2208 +
1691683832.3553958-UTR-L-elsbetiae_contig7297:2149..22081691683832.3553958-UTR-L-elsbetiae_contig7297:2149..2208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7297 2150..2208 +
1622816812.6268759-UTR-L-elsbetiae_contig7297:5583..56061622816812.6268759-UTR-L-elsbetiae_contig7297:5583..5606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7297 5584..5606 +
1691683832.4325202-UTR-L-elsbetiae_contig7297:5583..56061691683832.4325202-UTR-L-elsbetiae_contig7297:5583..5606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7297 5584..5606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.5827231-CDS-L-elsbetiae_contig7297:2208..22671622816812.5827231-CDS-L-elsbetiae_contig7297:2208..2267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 2209..2267 +
1691683832.3665795-CDS-L-elsbetiae_contig7297:2208..22671691683832.3665795-CDS-L-elsbetiae_contig7297:2208..2267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 2209..2267 +
1622816812.5927472-CDS-L-elsbetiae_contig7297:2916..30311622816812.5927472-CDS-L-elsbetiae_contig7297:2916..3031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 2917..3031 +
1691683832.383691-CDS-L-elsbetiae_contig7297:2916..30311691683832.383691-CDS-L-elsbetiae_contig7297:2916..3031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 2917..3031 +
1622816812.6027403-CDS-L-elsbetiae_contig7297:3604..37151622816812.6027403-CDS-L-elsbetiae_contig7297:3604..3715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 3605..3715 +
1691683832.397159-CDS-L-elsbetiae_contig7297:3604..37151691683832.397159-CDS-L-elsbetiae_contig7297:3604..3715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 3605..3715 +
1622816812.6156354-CDS-L-elsbetiae_contig7297:5364..55831622816812.6156354-CDS-L-elsbetiae_contig7297:5364..5583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 5365..5583 +
1691683832.4179194-CDS-L-elsbetiae_contig7297:5364..55831691683832.4179194-CDS-L-elsbetiae_contig7297:5364..5583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7297 5365..5583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7297.16166.1prot_L-elsbetiae_contig7297.16166.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7297 2209..5583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7297.16166.1

>prot_L-elsbetiae_contig7297.16166.1 ID=prot_L-elsbetiae_contig7297.16166.1|Name=mRNA_L-elsbetiae_contig7297.16166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MSGEVGSLRYMSPEVASQHPYNEKTDVHSFAVVLWELVTGWLPYAGLSPD
QFMFQAVQHGQRPLMQFGWDSTFKALLASCWAEDPRDRPGFSIVHATLAT
LVAEKGTPSVAQDKGGSSSGGGGAQSTPSSSSSSRSGGFMSRFMPGRRKL
RTDPPASDEKGVGKSER*
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mRNA from alignment at L-elsbetiae_contig7297:672..5606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7297.16166.1 ID=mRNA_L-elsbetiae_contig7297.16166.1|Name=mRNA_L-elsbetiae_contig7297.16166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4935bp|location=Sequence derived from alignment at L-elsbetiae_contig7297:672..5606+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCACCTGGTTTGTTAACCGCAGTGTTTTTGCTGCTCTTCGCTGCGCTC
TCCTGTGGCACGGCAAACGCTGCGCGCGCGTGCGTGCGTGTGTGTGTGCC
TGTGGCTCGCTGCTCACGGCCGGGGGGCTGACTTGCGTGGATTTTCATTG
ATGGATGTGCCATGCACGCAAAGCATCGAACGGCGGGCAGTTGTAGACCT
TCTTCTTCTTCTAAAGCTCAAGAAGCCCCCAACGTAGCAGTATTCGTTGG
TCTGCCTCAAGGTCCTCGTACGTGCATGTGTATCATACGTAAATACGGAG
CTGACCAAGAGCAACACCTGCCATCAACAGAACCGACCGATGCGGTCGGT
AGATGCAAGGTCCAACCAGACACCTGACAGCGGGGAGCGCTAGTTCTTTC
GCAACGAAAATAAGCTGAAGGCTTGGAGATGAGTGGCGGGCGTTTTTCTT
TTGCAGAAGACCATTTCTTTTTTCGAATGCTGTGCTCACCACCTGACGGC
GGGCGTGGTTGATTTATAAACCTCTTGCTGCTGCCCCTCACTGCTGCTTC
CTTCCGCTGCTCTCTGGTTTTGCTTGTGCTCTCTGCCGCTGCCGTGTTGG
CGCCGCCACCGCCGTTCCCTTTCGCCCCCGCCCATCCTGGGCGCCTGCTG
CCGCCTTCATTCAATCCCTGCAACAACGGCCGCCTCGGCTACACGCCCAC
ACCCTCGCTCGAATCCGGCACCCGCTCTGCGTGTTCCCCCCCCGGACCTT
AATTTTTTATTCTTCTTTCTGTGCACACGCTGCCGTGTGCCTCGGACACA
CGTCGTGTGCCCCCGGTATACGACGTTGACGGTGACTGCTCTGCGCCGGC
CGCGACAGTTTGGTGAGTGGGGCAGCTGGATGTCAAAAAGGGGGTGACCA
GAGTTGTTGTGTTAAGTGGTGGGGGTGTGATGTGGGAGCGCAAGCATAAA
TTGTAGCGCTCGCCTTTGAGAAGCAGGGGCGGGGCGGAGCGGGGCGGGGA
CCCGCAGGGGAAGAAGGGGCCGCTGGGTGGGCCCGGGATAAAAGCACAAA
AGAGAGGGGCACGGGTCTTTGATGCCGAAAATAAGAATTCAGCATGGTTT
GACGGGCAGAGCGATGCCGGATCTTTCTCGCCCGCGGCTCTACTGTGGCG
ATGCGTTGGTTTTCAGAGGAACCGCCGTAGATACAACCAGCTGGAAACAC
GAAGGGTTAGGGTTGTCGTGGACACAAAACAGGAAGCAAAGCCGCAGGAT
CAATCCATCGTGACTGCCTGCTAGCCCCAGGCCCTGCCCGCATCCAATAG
GCTGAATTGTGGGCAACAACACTCCCGTCTCTGTTTTTTGTAACGCTTCG
CCCGTTTCCGTGCTGCCCGCTCGCTGCCTTGCTCCTTGTGTTGCCCTGGA
CTCCTCCTTTACCATCGTGTCGTCTCGTTTCGTGGACTTCCCCCCCCCCC
CGACAAATGGCACTGAAACAAAAAAAAGACCTGGGGCTGGCCAAGGTCAT
AAAGCGTTCCGAGGCAGGAGTGGACGAGTTTTATCGGATGTCTGGCGAGG
TTGGGAGCCTGCGTTACATGAGCCCGGAGGTTGCTTCCCAGCACCCGTGA
GTCTTGTCTCTCTCTCTCTGTCTCTGCATCTCGCTCACCCTGCCTTCTCT
TTGTCTGCTCCTTCTTCTCGAGGGTTGAATATAGTCGGCTTATGTTCTCA
ACAGAAAGAAACATGCTGCTCGTGTGCGTGTGTCCCTCTCCTTCCCTTCC
CTCTCTTCTTTTTCTTCATGGGTGTTGTCGCCTTCGTCTATTCGCCACCC
CTGATTCACCTGCCCCCCCCCCCCCCCGTGTGTGTGTGTGTGTGAACTAC
GACCACGCTTCGTGTGCAACTTGTGGGTGCTTTAGCGTGCGTCGCCTGCG
CTGCCGTGCCGTCGATAGCTAGTTTTGCCTCACCGTACCGTACCTTGCCG
TACCGTACCGCACCGCACCGTACCGTACCGTACCGTACCGTACCGTGCCT
CACCGTACCATACCGTACCGCACCGGCGCCGCGCCCCACCGCACCCCACT
GTGCACTAGTTTTTGTCTCTATGTTTGTCGGCTGCGCCGTGCCACCGTCC
GTATATCCGCACCGTACCGCATGTGTGCCGATCGTCATGCGCCCCGTGTC
GTGTGCTGCGTGCGCTGCGCGTTGCCGGGCCGTGCCGTATTCTGTGTGTG
TTTGTGCGTTGCGCTGTCATGTGCTCCGCCGCGCCGTACGCACAGGTACA
ACGAGAAGACCGACGTGCACAGCTTCGCCGTGGTGCTGTGGGAGCTGGTC
ACGGGCTGGCTCCCCTACGCTGGCCTGTCCCCGGACCAGTTCATGTTCCA
GGCCGTACAGGTACGATTTGCAGCAGCAGCAGCGGTAGCGGTAGCAGCAG
TCGGTTGACACGGGCCATGTTTAACTGCGCCGTTGATTGGCCTGTCCTTT
GTTTGATGCCTGTTCGTTGAAATGCATGAGATTATTTCGTTCCATCTGTT
CGTGTGATGATGCTATTTTCGTATGTTGCGGCCGGCGGCGCCCTCCCTCC
CGCCCCTTGGGCTTCTTCTCTCCCCGCCTCTGTCTGTACCTCTCTCCCTC
GCTTTCATCCCTGCCGCTGCTTCGCCCCCGTTCTCTTCCCTTCCCTTCCC
TTCCCTTTCCCGTCTCTCTTGGGGTTTTGTTCCCGTTTACCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCGGCCGCGCCCCCTCTGCGACTTGTTTGTGGGGCCCCCCCNNNNNNNNN
NCCCCCTCTTCCCCCCCTTTCTCTTCCCTCCCCTCCCCTCCCCTTCCCCC
CCCCTTTGGGGGTTTTTTTCCCTTTTCCCCCCCCCCCCCCCCTTGCCCCG
GCCTCTCGACCACGACTCGCCCACACACCGCAGCATGGTCAGCGACCTCT
GATGCAGTTTGGCTGGGACTCCACGTTCAAGGCCCTGCTTGCCTCGTGCT
GGGCCGAAGACCCTAGAGACCGCCCCGGGTTCTCCATCGTTCACGTGAGA
GACCGACAGATACAGAGAGACAGAGAGAGAGAGAACGACCGTGTCAGCTC
CATTTGGTGGCTTTGATTTTGCCCGCCCGTTACTCCTCTTGAGGCGACGT
GGGGTGGCGAGGACGTTGTGAAACACGCCACTATTCGCAAACCAATTTAT
GCTCCGCTGTTTGTCTCTGCTCTTGTGTTTTTTGGTTTCGGTGGTCACCG
TGAATTTTTCGTTGGTGCAATCGTGGAGTTTTGTCACTGATCAAGCACCC
ACGAGGCAGTAAAGGTTCATGTTGCACCACCAATGGCGAAGGCTCCTTAA
GTAAAGGAAGGCGGCACCAGAAAAAAAATATGTACATATGGCCGAGCTAC
TTTCGTCCATTTCCAAAAAAAGTAGCTACAGCAGTATGCATGCAAAAATA
CCGAACTTCGACCTCACCGTCGACGAGGGAAAGGGACGGCTGAACCCTTC
TCGCGACAAAAATCTTAGGCAAGCACCGCAGACGGGAGTATTGTAGTGGG
GGGGGGCTTGGGGAAAAGGAACAACTCCGTGTGACCACGGTTCAGTACTC
TGGCAAGATGCCCTCGTGACAAAGGAGCCCATCGAGCACTTGAATTCAGT
AGACCTCACGACTTTGTCGACAGGAGCGAGTTCTAGGAATATTCCGACCT
TTTGGCGTGGTTCTGTGACGTGTTTGCGGGACTGTCAAAAGTGCGCGCGC
GTGCATGCCGCGGCGCAGCCGCGGCCTAGCGCTATCCCTGCCCTCCAACC
TAGTACCTAACCAACACGCCTCTCGGTGGGTGGTCGGGTCGGGGTTTGGG
TTAGGGTTAGGGTTAGGGTTTAGGGTAAAAAAAAAAGCAGGTGGAAATAA
AATTGAACCCGATCCTGTATTTCCCAAAACATACGCTCAGTCCATTTAAC
CTCCACCCCTGGCGAACCACGGGCTATAAACCCCAGATCAACCCGCAGTA
GCCGTTGAGCCGGAACGTTCTAGGAAAAAGGAGAACCAGAACCTATCGAC
AAAGTCGTGAGGTCCACTCCTTGAATTTAATGTCAAGAGTGAAAATGAAA
AATAAAAAATGTTTTTTCACCCTTTTGAAACTTCGCGCGCCTCTCCGAAC
AAGCACCTCGAGGGTCGAGGTACAGTAGCGCGGCGGAAAACCAAACGCAG
TAATCGTTGATTTCTTCCCGCGGCTTTTGTGGGGGTTCGAGGCGAAGCTT
GTGCATGAGTGCTACAGAGTAGTACATAATTTATGCCCCCCACAGCCCCC
CTCCTCGCCATGCTTCTTTTGGGATGGACGGAAGCCGTTGGCCTACCAAA
TGTATATAAAAAGTATGTATGTATGTTTGTCGTGTGGAGTGACTGGACAA
GCGTAAGCTGTAGATACACCTGCTGCTGCTGCCAAAACCGGGCGTATCTT
TGGCGGCCCCGTCGGCGGGGCGGATGGGATGGGGTGTCTGGCTGTTGTCC
ACTCACTGTTGTTGCCTGTCTTGACTTTCGTTTGTCTTTGTGCACGCCGC
CCAAAACGCCGCGATGCATGGCATATGTATACATATATGTACACGTGACA
TGTATGCATATGTACTGACTAAAAAGAAAGAGTATGTATGTAAAATTTAC
AAACGTACGTATTAAAATTTGTACATACTGTTTTGTGCAACAGGCAACCT
TGGCGACCCTGGTGGCGGAGAAGGGCACCCCCTCGGTGGCCCAGGACAAG
GGCGGCAGCTCCAGCGGCGGCGGTGGTGCGCAGTCCACGCCATCGTCCTC
ATCTTCGTCGCGCTCTGGGGGTTTCATGTCGCGCTTCATGCCTGGGCGAC
GGAAGTTAAGGACAGACCCGCCCGCAAGTGACGAAAAAGGGGTCGGCAAG
AGCGAGCGATGACGGGTCGGTGGTATCTGTGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7297:672..5606+

>mRNA_L-elsbetiae_contig7297.16166.1 ID=mRNA_L-elsbetiae_contig7297.16166.1|Name=mRNA_L-elsbetiae_contig7297.16166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig7297:672..5606+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGGCGAGGTTGGGAGCCTGCGTTACATGAGCCCGGAGGTTGCTTC
CCAGCACCCATGTCTGGCGAGGTTGGGAGCCTGCGTTACATGAGCCCGGA
GGTTGCTTCCCAGCACCCGTACAACGAGAAGACCGACGTGCACAGCTTCG
CCGTGGTGCTGTGGGAGCTGGTCACGGGCTGGCTCCCCTACGCTGGCCTG
TCCCCGGACCAGTTCATGTTCCAGGCCGTACAGGTACAACGAGAAGACCG
ACGTGCACAGCTTCGCCGTGGTGCTGTGGGAGCTGGTCACGGGCTGGCTC
CCCTACGCTGGCCTGTCCCCGGACCAGTTCATGTTCCAGGCCGTACAGCA
TGGTCAGCGACCTCTGATGCAGTTTGGCTGGGACTCCACGTTCAAGGCCC
TGCTTGCCTCGTGCTGGGCCGAAGACCCTAGAGACCGCCCCGGGTTCTCC
ATCGTTCACCATGGTCAGCGACCTCTGATGCAGTTTGGCTGGGACTCCAC
GTTCAAGGCCCTGCTTGCCTCGTGCTGGGCCGAAGACCCTAGAGACCGCC
CCGGGTTCTCCATCGTTCACGCAACCTTGGCGACCCTGGTGGCGGAGAAG
GGCACCCCCTCGGTGGCCCAGGACAAGGGCGGCAGCTCCAGCGGCGGCGG
TGGTGCGCAGTCCACGCCATCGTCCTCATCTTCGTCGCGCTCTGGGGGTT
TCATGTCGCGCTTCATGCCTGGGCGACGGAAGTTAAGGACAGACCCGCCC
GCAAGTGACGAAAAAGGGGTCGGCAAGAGCGAGCGATGAGCAACCTTGGC
GACCCTGGTGGCGGAGAAGGGCACCCCCTCGGTGGCCCAGGACAAGGGCG
GCAGCTCCAGCGGCGGCGGTGGTGCGCAGTCCACGCCATCGTCCTCATCT
TCGTCGCGCTCTGGGGGTTTCATGTCGCGCTTCATGCCTGGGCGACGGAA
GTTAAGGACAGACCCGCCCGCAAGTGACGAAAAAGGGGTCGGCAAGAGCG
AGCGATGA
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