mRNA_L-elsbetiae_contig7292.16161.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7292.16161.1
Unique NamemRNA_L-elsbetiae_contig7292.16161.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7292.16161.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 1.570e-108
Identity = 180/239 (75.31%), Postives = 201/239 (84.10%), Query Frame = 1 
Query:    1 QVLAEAARRIEAEAPWYEALGLRSEEAADGGGDLAVETVLAFNVASGLIDAANETVLAPVFVVLKGLLGAVQGAAAAREEIVGLTRYCVGISRCLLEAAKVEDMPRSIVATLGEFKGEMAAVGRFVQTYGTRSSGCCWRRMAFNSHDLDAAAGHKQKLKDLLDSVLAGLAVEANLGVNDIKVIVTAGDPPRLGDMAPVPREAPALTETYVHRIAMLEAVVADLTDPQRSASATHCLLGM 717
            + LAEAARR+EAE PW+E LGLR ++ ADGGGDL VET+LAFNVASGLI+AANETVLAPVFVVLKGLLGAVQGAAAAREEIV L RYCV +SRCLL+AAK + MP +I +TL EFKGEM AVGRFVQTYGTRSSGCCWRRM  N+HD D AAGHK+KLKDLLD+VLAGLA + N G+N IK ++ A DPP LG +A +PREAP L  TYV R AMLE VV DLT P RSASATHCLLGM
Sbjct:   38 EALAEAARRMEAETPWFEKLGLRYQDVADGGGDLTVETILAFNVASGLINAANETVLAPVFVVLKGLLGAVQGAAAAREEIVELARYCVAMSRCLLDAAKADVMPETIKSTLEEFKGEMEAVGRFVQTYGTRSSGCCWRRMVLNAHDRDTAAGHKRKLKDLLDAVLAGLAAQTNQGLNQIKGMILARDPPSLGALAEIPREAPVLPTTYVQRTAMLEEVVDDLTHPHRSASATHCLLGM 276
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BLAST of mRNA_L-elsbetiae_contig7292.16161.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.440e-9
Identity = 52/196 (26.53%), Postives = 88/196 (44.90%), Query Frame = 1 
Query:  139 GLIDAANETVLAPVFVVLKGLLGAVQGAAAAREEIVGLTRYCVGISRCLLEAAKVEDMPRSIVATLGEFKGEMAAVGRFVQTYGTR---SSGCCWRRMAFNSHDLDAAAGHKQKLKDLLDSVLAGLAVEANLGVNDIKVIVTAGDPPRLGDMAPVPREAPALTETYVHRIAMLEAVVADLTDPQRSASATHCLLGM 717
            GL++ A+   L P+    KGL+ A +GAA A E +  L  +C  ++  LL+  K  D    ++  L +F      + +  +   TR   ++  C+ R      D DA      KL+ + + +         + +  +     A  PP+ G+MA +P  APAL   +V R  ++EAV  DL   +R+      L G+
Sbjct:   51 GLLNVASVGPLMPICEAFKGLIQAAEGAAEADENLRELIAWCAFLTDVLLQHGKEVDALAPVMKPLRDFVSTTNQLAKRAKRLATRRKCAALLCFARDGKQIQDFDA------KLRSIWNDI-------QGVTILWVSAEFRAARPPKTGEMAKIPHNAPALPPAFVERSGLVEAVAQDLAAAERATDTADVLRGI 233
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7292.16161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH19_ECTSI1.570e-10875.31NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5L982_9PHAE3.440e-926.53NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7292contigL-elsbetiae_contig7292:6663..7380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.0
Seed ortholog evalue5.5e-95
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size718
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.2142236-CDS-L-elsbetiae_contig7292:6662..73791622816812.2142236-CDS-L-elsbetiae_contig7292:6662..7379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 6663..7379 +
1691683832.1137247-CDS-L-elsbetiae_contig7292:6662..73791691683832.1137247-CDS-L-elsbetiae_contig7292:6662..7379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7292 6663..7379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7292.16161.1prot_L-elsbetiae_contig7292.16161.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7292 6663..7379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7292.16161.1

>prot_L-elsbetiae_contig7292.16161.1 ID=prot_L-elsbetiae_contig7292.16161.1|Name=mRNA_L-elsbetiae_contig7292.16161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
QVLAEAARRIEAEAPWYEALGLRSEEAADGGGDLAVETVLAFNVASGLID
AANETVLAPVFVVLKGLLGAVQGAAAAREEIVGLTRYCVGISRCLLEAAK
VEDMPRSIVATLGEFKGEMAAVGRFVQTYGTRSSGCCWRRMAFNSHDLDA
AAGHKQKLKDLLDSVLAGLAVEANLGVNDIKVIVTAGDPPRLGDMAPVPR
EAPALTETYVHRIAMLEAVVADLTDPQRSASATHCLLGM
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mRNA from alignment at L-elsbetiae_contig7292:6663..7380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7292.16161.1 ID=mRNA_L-elsbetiae_contig7292.16161.1|Name=mRNA_L-elsbetiae_contig7292.16161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=718bp|location=Sequence derived from alignment at L-elsbetiae_contig7292:6663..7380+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTACTTGCTGAAGCCGCGAGACGCATCGAGGCCGAAGCGCCGTGGTA
CGAGGCGCTCGGCTTGCGGTCCGAGGAAGCGGCAGACGGGGGCGGCGATT
TGGCCGTGGAGACCGTCCTCGCTTTCAATGTCGCGAGCGGCCTGATCGAT
GCAGCCAACGAGACCGTGCTGGCTCCCGTGTTCGTCGTTCTGAAGGGACT
ACTGGGCGCCGTTCAAGGCGCTGCGGCGGCTCGAGAGGAGATCGTCGGGC
TCACCCGGTACTGTGTGGGTATCTCGAGGTGCCTGCTCGAGGCGGCGAAG
GTGGAGGACATGCCCAGATCGATCGTGGCGACGCTCGGGGAGTTCAAGGG
CGAGATGGCGGCCGTGGGAAGGTTCGTCCAGACCTACGGCACTCGATCGA
GTGGCTGCTGTTGGCGTAGGATGGCGTTCAACTCTCACGATCTCGACGCC
GCTGCGGGCCACAAGCAGAAGCTGAAGGATTTGCTGGATTCGGTGCTGGC
CGGTCTAGCTGTCGAGGCCAACCTAGGCGTGAACGACATCAAGGTTATTG
TTACTGCGGGGGACCCCCCACGTCTAGGTGATATGGCACCGGTTCCACGC
GAAGCACCTGCACTGACCGAGACGTACGTGCACAGGATCGCTATGTTGGA
GGCAGTGGTAGCTGACCTCACGGATCCCCAACGTTCAGCATCCGCCACGC
ACTGTCTGCTGGGGATGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7292:6663..7380+

>mRNA_L-elsbetiae_contig7292.16161.1 ID=mRNA_L-elsbetiae_contig7292.16161.1|Name=mRNA_L-elsbetiae_contig7292.16161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig7292:6663..7380+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTACTTGCTGAAGCCGCGAGACGCATCGAGGCCGAAGCGCCGTGGTA
CGAGGCGCTCGGCTTGCGGTCCGAGGAAGCGGCAGACGGGGGCGGCGATT
TGGCCGTGGAGACCGTCCTCGCTTTCAATGTCGCGAGCGGCCTGATCGAT
GCAGCCAACGAGACCGTGCTGGCTCCCGTGTTCGTCGTTCTGAAGGGACT
ACTGGGCGCCGTTCAAGGCGCTGCGGCGGCTCGAGAGGAGATCGTCGGGC
TCACCCGGTACTGTGTGGGTATCTCGAGGTGCCTGCTCGAGGCGGCGAAG
GTGGAGGACATGCCCAGATCGATCGTGGCGACGCTCGGGGAGTTCAAGGG
CGAGATGGCGGCCGTGGGAAGGTTCGTCCAGACCTACGGCACTCGATCGA
GTGGCTGCTGTTGGCGTAGGATGGCGTTCAACTCTCACGATCTCGACGCC
GCTGCGGGCCACAAGCAGAAGCTGAAGGATTTGCTGGATTCGGTGCTGGC
CGGTCTAGCTGTCGAGGCCAACCTAGGCGTGAACGACATCAAGGTTATTG
TTACTGCGGGGGACCCCCCACGTCTAGGTGATATGGCACCGGTTCCACGC
GAAGCACCTGCACTGACCGAGACGTACGTGCACAGGATCGCTATGTTGGA
GGCAGTGGTAGCTGACCTCACGGATCCCCAACGTTCAGCATCCGCCACGC
ACTGTCTGCTGGGGATGCAGGTACTTGCTGAAGCCGCGAGACGCATCGAG
GCCGAAGCGCCGTGGTACGAGGCGCTCGGCTTGCGGTCCGAGGAAGCGGC
AGACGGGGGCGGCGATTTGGCCGTGGAGACCGTCCTCGCTTTCAATGTCG
CGAGCGGCCTGATCGATGCAGCCAACGAGACCGTGCTGGCTCCCGTGTTC
GTCGTTCTGAAGGGACTACTGGGCGCCGTTCAAGGCGCTGCGGCGGCTCG
AGAGGAGATCGTCGGGCTCACCCGGTACTGTGTGGGTATCTCGAGGTGCC
TGCTCGAGGCGGCGAAGGTGGAGGACATGCCCAGATCGATCGTGGCGACG
CTCGGGGAGTTCAAGGGCGAGATGGCGGCCGTGGGAAGGTTCGTCCAGAC
CTACGGCACTCGATCGAGTGGCTGCTGTTGGCGTAGGATGGCGTTCAACT
CTCACGATCTCGACGCCGCTGCGGGCCACAAGCAGAAGCTGAAGGATTTG
CTGGATTCGGTGCTGGCCGGTCTAGCTGTCGAGGCCAACCTAGGCGTGAA
CGACATCAAGGTTATTGTTACTGCGGGGGACCCCCCACGTCTAGGTGATA
TGGCACCGGTTCCACGCGAAGCACCTGCACTGACCGAGACGTACGTGCAC
AGGATCGCTATGTTGGAGGCAGTGGTAGCTGACCTCACGGATCCCCAACG
TTCAGCATCCGCCACGCACTGTCTGCTGGGGATG
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