mRNA_L-elsbetiae_contig7287.16156.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7287.16156.1
Unique NamemRNA_L-elsbetiae_contig7287.16156.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7287.16156.1 vs. uniprot
Match: D8LSP7_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSP7_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 2.890e-73
Identity = 133/212 (62.74%), Postives = 156/212 (73.58%), Query Frame = 1 
Query:   13 AVPFQGVPEVNAEVWSSVTGDGGQQQPPRTTAIFFLDRFSEGFAAALKVAESXXXXXXXXXXXXXXGGIGFVWADAPCQEEFARALGVSDASEVPALVVFSPKHQKSASFVGAWESESMASFLRKALGGRAPLFPIGGDNAPRLDESTDCSQRPPPAWLSGGDGFGQGGDAIEDDDMGDFMVEILAEEAKAKRELEEQVARDLEEQKEAEKA 648
            A  F+GVPEV  E+W+SVTG+G     P T  +FFLDRFSE FA+ L+ AE               GGI FVWADAPCQE FA+ LGVSDASEVP LV FS KH+KS  FVGAWE++S+ +FL +ALGGR PLFP+ G+ APR DES DC+QRPPPAWL+GG G G G  A EDD MGDFM EILAEEAKAKRELEE+VAR L+E ++A+ A
Sbjct:  639 AATFKGVPEVTPELWASVTGEGAGGGNPLTLGVFFLDRFSERFASDLRAAEEAAEKATARLGG---GGIAFVWADAPCQEGFAKTLGVSDASEVPVLVAFSSKHKKSTRFVGAWEADSLGTFLGRALGGRVPLFPVDGE-APRPDESVDCAQRPPPAWLAGG-GEGTGDAAEEDDGMGDFMAEILAEEAKAKRELEEEVARGLQEMEDAKGA 845
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BLAST of mRNA_L-elsbetiae_contig7287.16156.1 vs. uniprot
Match: A0A7S2UX42_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX42_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.760e-11
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 1 
Query:  223 FVWADAPCQEEFARALGVSDASEVPALVVFSPKHQKSASFVGAWESESMASFLRKALGGRAPLFPIGGDNAPRLDESTDCSQRPPPAWLSGGDGFGQGGDAIEDDDMGDFMVEILAEEAKAKRELEEQVARDLEE 627
            F W DA C  +F+ +L V D + +PA+V++SPK Q+SA  VG +E +S+ +FL++ L G    + +  +  P      DCS    P          Q     ED+DM D M EILAEE + +RE+ EQ  R   E
Sbjct:  298 FSWVDATCDPDFSASLDV-DLAMLPAVVLYSPKKQRSARHVGTYEYDSVKTFLQQVLRGSTHTYELYQEPVP---SDVDCSDGNRP--------ISQDIPVEEDEDMDDLMAEILAEEQR-EREMREQELRXXXE 419
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BLAST of mRNA_L-elsbetiae_contig7287.16156.1 vs. uniprot
Match: A0A7S2GE96_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE96_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.240e-11
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 1 
Query:  223 FVWADAPCQEEFARALGVSDASEVPALVVFSPKHQKSASFVGAWESESMASFLRKALGGRAPLFPIGGDNAPRLDESTDCSQRPPPAWLSGGDGFGQGGDAIEDDDMGDFMVEILAEEAKAKRELEEQVARDLEEQKE 636
            F WA+  CQ   A A  V   +++P LV +SPK Q+ A F+G + +E++   L   L GR    P+    +P + +  DC+     +     + F       +++D+GDFM EILAEE +AK+EL +++AR+  E K+
Sbjct:  299 FSWANGACQLSMAEAFDVHP-TQLPTLVAYSPKKQRFAGFIGVYGAEAVKDLLSGVLSGRVRTTPMY--QSPEVSD-LDCTGVEVDSSADIAEVF------EDEEDIGDFMAEILAEEQRAKQELADEIAREAAEAKQ 426
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BLAST of mRNA_L-elsbetiae_contig7287.16156.1 vs. uniprot
Match: A0A7S2GFB5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GFB5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.140e-10
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 1 
Query:  223 FVWADAPCQEEFARALGVSDASEVPALVVFSPKHQKSASFVGAWESESMASFLRKALGGRAPLFPIGGDNAPRLDESTDCSQRPPPAWLSGGDGFGQGGDAIEDDDMGDFMVEILAEEAKAKRELEEQVARDLEEQKE 636
            F WA+  CQ   A A  V   +++P LV +SPK Q+ A F+G + +E++   L   L GR    P+    +P + +  DC+     +     + F       +++D+GDFM EILAEE +AK+EL +++AR+  E K+
Sbjct:  619 FSWANGACQLSMAEAFDVHP-TQLPTLVAYSPKKQRFAGFIGVYGAEAVKDLLSGVLSGRVRTTPMY--QSPEVSD-LDCTGVEVDSSADIAEVF------EDEEDIGDFMAEILAEEQRAKQELADEIAREAAEAKQ 746
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7287.16156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSP7_ECTSI2.890e-7362.74Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2UX42_9STRA3.760e-1137.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2GE96_9STRA9.240e-1134.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2GFB5_9STRA1.140e-1034.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7287contigL-elsbetiae_contig7287:2571..5842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog164328.Phyra80721
KEGG koko:K09584
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG OGs28P21@1,2QVNH@2759,3QJ6U@4776
EC5.3.4.1
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-15_003070.1
Exons4
Model size728
Cds size726
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7287.16156.1prot_L-elsbetiae_contig7287.16156.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7287 2571..5842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.7184741-CDS-L-elsbetiae_contig7287:2570..28581622816811.7184741-CDS-L-elsbetiae_contig7287:2570..2858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7287 2571..2858 +
1691683831.757967-CDS-L-elsbetiae_contig7287:2570..28581691683831.757967-CDS-L-elsbetiae_contig7287:2570..2858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7287 2571..2858 +
1622816811.7288275-CDS-L-elsbetiae_contig7287:3721..38731622816811.7288275-CDS-L-elsbetiae_contig7287:3721..3873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7287 3722..3873 +
1691683831.7696714-CDS-L-elsbetiae_contig7287:3721..38731691683831.7696714-CDS-L-elsbetiae_contig7287:3721..3873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7287 3722..3873 +
1622816811.7396748-CDS-L-elsbetiae_contig7287:4946..50821622816811.7396748-CDS-L-elsbetiae_contig7287:4946..5082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7287 4947..5082 +
1691683831.7812748-CDS-L-elsbetiae_contig7287:4946..50821691683831.7812748-CDS-L-elsbetiae_contig7287:4946..5082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7287 4947..5082 +
1622816811.7507205-CDS-L-elsbetiae_contig7287:5692..58421622816811.7507205-CDS-L-elsbetiae_contig7287:5692..5842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7287 5693..5842 +
1691683831.79176-CDS-L-elsbetiae_contig7287:5692..58421691683831.79176-CDS-L-elsbetiae_contig7287:5692..5842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7287 5693..5842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7287.16156.1

>prot_L-elsbetiae_contig7287.16156.1 ID=prot_L-elsbetiae_contig7287.16156.1|Name=mRNA_L-elsbetiae_contig7287.16156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=242bp
GSGPAVPFQGVPEVNAEVWSSVTGDGGQQQPPRTTAIFFLDRFSEGFAAA
LKVAESAAELAAGRLAGGPAGGIGFVWADAPCQEEFARALGVSDASEVPA
LVVFSPKHQKSASFVGAWESESMASFLRKALGGRAPLFPIGGDNAPRLDE
STDCSQRPPPAWLSGGDGFGQGGDAIEDDDMGDFMVEILAEEAKAKRELE
EQVARDLEEQKEAEKAEAPAKRTKKTVKKRKKKKSGSRSEL*
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mRNA from alignment at L-elsbetiae_contig7287:2571..5842+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7287.16156.1 ID=mRNA_L-elsbetiae_contig7287.16156.1|Name=mRNA_L-elsbetiae_contig7287.16156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3272bp|location=Sequence derived from alignment at L-elsbetiae_contig7287:2571..5842+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGCGGCCCAGCAGTTCCGTTCCAGGGGGTCCCGGAGGTGAACGCGGA
GGTGTGGTCGTCCGTCACGGGGGACGGCGGGCAGCAGCAGCCCCCCCGCA
CGACGGCCATTTTTTTCCTGGATCGGTTCTCGGAAGGGTTCGCGGCGGCG
CTGAAGGTGGCCGAGAGCGCGGCGGAGCTGGCGGCGGGTCGCCTCGCGGG
GGGCCCCGCGGGTGGGATAGGTTTCGTCTGGGCGGACGCGCCGTGCCAGG
AGGAGTTCGCCAGGGCTCTCGGCGTTTCCGACGCATCCGTGAGTCACGGC
ATCTTTTTTTTAGTTATGTTGTATTTAACCATGCCTTTTTGATTTTTTGT
TTTGTTTTGTTTTGCGGGCGCGGGCATTCTCGTCGGCGGCTGAGCTGTGG
GCGGTGGTGGTGGGTGCGTGCGTGGATGAACGCCTTGTGTCCGGCCTCGC
GTTGCGAACGTGAGTGCCGCCGACGAAGCAGGAATGCCTGTGTTTTGTTG
TTGTCGTTGTTGTCGTTGTTATTGTTGTTGTTTGCTGTTGTTGCTGTGGT
GGTTGTTGTGTGTGGGTTGCATCTCCACCTTGTGGCCGGGCCTCATTTTC
AAAGAAGCACCAAAGAAAACTCTGTGCCTCGCTCAAGAAGGGTCTCCCTT
CGCCATCTACCCACAAAAACTCATATCGTTTTGCCATGTCGAAGGGGCCC
CCTTCTGCCGTTGTTGGAGTAACCCAATCCACCGTGTGGTTACCCCCCGG
CGCCCCTTCCCCCTACGAATGTCCCCCTCCCTCTCACGAACCCTCCTTCC
CCCGTTACGGAAGCCATCATGAGCATCTCCCGTCTACATACGTCACCAAT
GCTGCACGGCCAAGAGACCAATCAAACAGTGACCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCCCTCTTTTCCTT
TTTTCGGGGGGGCCCCCCCGGGGGGCTTCTTCCCCGCGCCCCNNNNNNNN
NNCAGGAAGCCCCCATGCCCCTCCCCCCGTCACAAACGCCCCCCATGCCG
CCCGCCCAAGAGACCAATCAGACAGTACACCCCCCCCCCCCCCCCGCGCT
TCCCCTCTTAACTGTTCGACCACGCCCTAACTGCTGTTTGGCCCCTGTCA
GGAGGTACCCGCGCTGGTGGTTTTCTCCCCGAAGCACCAGAAGTCGGCCA
GCTTCGTGGGCGCGTGGGAGTCTGAGAGCATGGCGTCGTTCCTGAGAAAG
GCTCTCGGAGGCCGTGCGCCCTTGTTCCCCATCGGCGGCGACAATGCACC
GAGGTGATTTGATGGATTGTTCCGGCCCGGATCCCGGCCTTCCATGTGAT
TTTGTTGCTTTTACACTTGTTTTCTTGAATATTCCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCCCCCCTCTCTCTCTCTTTC
TCTTGTCTGACTTGTAGTGCTGTTTGCTTGCACCAAGGGGTTTTACGCCG
AGTACATCTACATACCTAGCTAGATACACGCCCAGCGGGCGAGGCGGTGT
GCTGTGTGTGCCGGCGCTTCGTCAGTTGCGGCACCAGTAGTTCGTTTCCG
GTTGGTTGTGTGCGACGACCCCGAAAAATTACCAGCGAATTTCAGAATCT
TCCTGTGGATGCACGTAGTACATACATCAACGATTTTGTTTTCCTCGAGA
GGCGTGCCGTTTAGCATCCAACACCTCGGTCATACTACCCCCCTAACCGA
CACTATAGTTTGGTGACTGTCACTACTAACAAAGGGAGAATCCAGCTCAG
TCCCGCGGAGAGGGGTGTTGGAACGTCCGTAGTGTGCGTGCCTCCCCCAA
CCCAAAAGTCCCATATATATATGTTTTTTGTAGCAGGTTGGGGTGTTGGG
ATGAGCTTCGAACCGTTTCTGAAATGGAGTTTCCGGCAACGGTTCCAAAA
CGCACACGGTACCTAGGCATTCCTCGAAAGCCCACAAGAAATGCGTACTG
CGTGTGCTCCGAAATCTTTCGTCGGGTGTTTGTCGTCAAACCGCGAACGC
CGTTCTACAGCTGCATGTGACTTTTGTATGTATGTTAGTACGGGAATCGC
TTGGGCGTCTCGCGAGCGTATGTATCTCACCCGCCCGCCTCACCCAACGT
TCGCATACGACTCAACCACCTGTTGATTTAGCTGTTTCGTTTCCCAGCTG
ACAGTTGCAGATTCTGCTGAAACATGTGACACATATATGCTTAATTCAGT
GCTTGATCCTTGCTTGTACCGATCGATCCAGAATATCAATATAGATGAAA
TAGTAAAAAAGCCGATCACCTGTTGTATATATGTACAGCAATAAATAGCA
TTATCTTTTGTCACGTTTCCTCGCAGGCTCGACGAGAGCACCGACTGCTC
GCAGCGGCCGCCGCCCGCGTGGTTGTCGGGCGGCGACGGTTTCGGTCAGG
GAGGAGACGCGATAGAGGACGACGACATGGGAGACTTCATGGTGGAGATC
CTGGCGGAAGAGGTGTGTTTATGTGTGCGTCTTGAGAGATAGGGGTAAGA
GCGAGTGGGAGAGGAGCAGAGAGGAGGATATATACAAGTATATATAGAGA
TACATAGAGAGAGAGGAGACAATGACGGCCAGATACTGGGTATGTTTGTG
AAGGGATGGGCTGATGGACAGACGAAAAGAATCAGAGGACCGGGGTTTGT
TGACATGTATGGCGTTCCAGAGTATGTTGTTGTTGTTGTTGTTGTCTTTG
TTGTTGTTGTCTTTGTTGTTGTTTGGGTGGGGCAGGCAGAGTGCCTGACA
GTAAGGGCGACCGCTGCGCGAGGGTTTTAGCTTCCGACCGCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCTCCTCCCCCCCCCCCCNNNNNNNNTTT
TTTTTTTTTTTGTTTGGGGGGGGGGGGCGGGGGGCCTGACAGGAAGGGCG
CCCGCGGCGCGGGGGTTTTAGCTTCCCCCCCCCCCCCCCCCCCCCTCCCC
CCCCGCAATCCAGCCGAAAGCCTCTTGCACCCATGCGTGTCCAACTACCT
CCTGTTGTCTCTTACCCCCTAGGCGAAGGCGAAGCGAGAACTGGAGGAAC
AGGTAGCTAGGGACCTGGAGGAACAGAAGGAGGCCGAAAAGGCCGAGGCG
CCCGCAAAGCGAACCAAGAAGACCGTGAAGAAGAGGAAAAAGAAGAAGTC
CGGGTCGCGGTCGGAGCTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7287:2571..5842+

>mRNA_L-elsbetiae_contig7287.16156.1 ID=mRNA_L-elsbetiae_contig7287.16156.1|Name=mRNA_L-elsbetiae_contig7287.16156.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1452bp|location=Sequence derived from alignment at L-elsbetiae_contig7287:2571..5842+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGCGGCCCAGCAGTTCCGTTCCAGGGGGTCCCGGAGGTGAACGCGGA
GGTGTGGTCGTCCGTCACGGGGGACGGCGGGCAGCAGCAGCCCCCCCGCA
CGACGGCCATTTTTTTCCTGGATCGGTTCTCGGAAGGGTTCGCGGCGGCG
CTGAAGGTGGCCGAGAGCGCGGCGGAGCTGGCGGCGGGTCGCCTCGCGGG
GGGCCCCGCGGGTGGGATAGGTTTCGTCTGGGCGGACGCGCCGTGCCAGG
AGGAGTTCGCCAGGGCTCTCGGCGTTTCCGACGCATCCGGGAGCGGCCCA
GCAGTTCCGTTCCAGGGGGTCCCGGAGGTGAACGCGGAGGTGTGGTCGTC
CGTCACGGGGGACGGCGGGCAGCAGCAGCCCCCCCGCACGACGGCCATTT
TTTTCCTGGATCGGTTCTCGGAAGGGTTCGCGGCGGCGCTGAAGGTGGCC
GAGAGCGCGGCGGAGCTGGCGGCGGGTCGCCTCGCGGGGGGCCCCGCGGG
TGGGATAGGTTTCGTCTGGGCGGACGCGCCGTGCCAGGAGGAGTTCGCCA
GGGCTCTCGGCGTTTCCGACGCATCCGAGGTACCCGCGCTGGTGGTTTTC
TCCCCGAAGCACCAGAAGTCGGCCAGCTTCGTGGGCGCGTGGGAGTCTGA
GAGCATGGCGTCGTTCCTGAGAAAGGCTCTCGGAGGCCGTGCGCCCTTGT
TCCCCATCGGCGGCGACAATGCACCGAGGAGGTACCCGCGCTGGTGGTTT
TCTCCCCGAAGCACCAGAAGTCGGCCAGCTTCGTGGGCGCGTGGGAGTCT
GAGAGCATGGCGTCGTTCCTGAGAAAGGCTCTCGGAGGCCGTGCGCCCTT
GTTCCCCATCGGCGGCGACAATGCACCGAGGCTCGACGAGAGCACCGACT
GCTCGCAGCGGCCGCCGCCCGCGTGGTTGTCGGGCGGCGACGGTTTCGGT
CAGGGAGGAGACGCGATAGAGGACGACGACATGGGAGACTTCATGGTGGA
GATCCTGGCGGAAGAGGCTCGACGAGAGCACCGACTGCTCGCAGCGGCCG
CCGCCCGCGTGGTTGTCGGGCGGCGACGGTTTCGGTCAGGGAGGAGACGC
GATAGAGGACGACGACATGGGAGACTTCATGGTGGAGATCCTGGCGGAAG
AGGCGAAGGCGAAGCGAGAACTGGAGGAACAGGTAGCTAGGGACCTGGAG
GAACAGAAGGAGGCCGAAAAGGCCGAGGCGCCCGCAAAGCGAACCAAGAA
GACCGTGAAGAAGAGGAAAAAGAAGAAGTCCGGGTCGCGGTCGGAGCTCT
GAGCGAAGGCGAAGCGAGAACTGGAGGAACAGGTAGCTAGGGACCTGGAG
GAACAGAAGGAGGCCGAAAAGGCCGAGGCGCCCGCAAAGCGAACCAAGAA
GACCGTGAAGAAGAGGAAAAAGAAGAAGTCCGGGTCGCGGTCGGAGCTCT
GA
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