mRNA_L-elsbetiae_contig7283.16150.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7283.16150.1
Unique NamemRNA_L-elsbetiae_contig7283.16150.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.490e-31
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 204
            MVFDAIKTLKER+GSSIQAIKKSITAT P+LNFTPHQMRSALKKGVESGKFIK+K SYKLS EAKKPA
Sbjct:   11 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPA 78
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BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 5.770e-31
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 204
            MVFDAIKTLKER+GSSIQAIKKSITAT P+LNFTPHQMRSALKKGVESGKF+K+K SYKLS EAKKPA
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPA 68
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BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.560e-30
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 204
            MVFDAIKTLKER+GSSIQAIKKSITAT P+LNFTPHQMR ALKKGVESGKFIK+K SYKLSPEAKKPA
Sbjct:  104 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPA 171
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BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.150e-29
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKP 201
            MVFDAIK+LKER+GSSIQAIKKSITAT P+LNFTPHQMRSALKKGVE+GKFIKVK SYKLS EAKKP
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 67
[Close]
BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.610e-29
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 204
            MVFDAIK LKER GSS+ A+KK I AT PSLNFTPHQMRSALKKG ESGKFIKVK SYKLSPEAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
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BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.180e-28
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 204
            MVFDAIK LKER GSS+ A+KK I AT PSLNFTPHQMRSALKKG ESGKFIKVK SYKLSPEAKKPA
Sbjct:   12 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.040e-24
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSP 186
            MVFDAIKTLKER+GSSIQA+KKSITAT P+L+FTPHQMRSALKKGVE+GKFIKV+ +  L+P
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLAP 62
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BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.950e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:   13 AIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKP 201
            AI  LKER+GSS+ AIKK I AT P+LNF PHQ+R ALKKG E+G FIKVK SYK+SPEAKKP
Sbjct:   11 AILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.240e-18
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLSPEAKKPA 204
            M  +A+K LKER+GSS+ AIKK ITA+ PSL FT H MRSALKKGVESGKFIKVK SYKLS   ++PA
Sbjct:    7 MTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPA 74
[Close]
BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 8.970e-17
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGKFIKVKGSYKLS 183
            M  +A+K LKER+GSS+ AIKK ITA+ PSL FT H +RSALKKGVESGKFIKVK SYKLS
Sbjct:    7 MTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7283.16150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI2.490e-3191.18Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KST0_9PHAE5.770e-3189.71H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
A0A6H5KCU1_9PHAE1.560e-3091.18H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ75_ECTSI1.150e-2989.55H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE4.610e-2985.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI1.180e-2885.29H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5K9S6_9PHAE6.040e-2480.65H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI5.950e-2073.02H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI1.240e-1870.59H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE8.970e-1773.77H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7283contigL-elsbetiae_contig7283:862..1963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue9e-25
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size480
Cds size480
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.3357975-CDS-L-elsbetiae_contig7283:861..10201622816811.3357975-CDS-L-elsbetiae_contig7283:861..1020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7283 862..1020 +
1691683831.45441-CDS-L-elsbetiae_contig7283:861..10201691683831.45441-CDS-L-elsbetiae_contig7283:861..1020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7283 862..1020 +
1622816811.3494127-CDS-L-elsbetiae_contig7283:1642..19631622816811.3494127-CDS-L-elsbetiae_contig7283:1642..1963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7283 1643..1963 +
1691683831.4793158-CDS-L-elsbetiae_contig7283:1642..19631691683831.4793158-CDS-L-elsbetiae_contig7283:1642..1963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7283 1643..1963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7283.16150.1prot_L-elsbetiae_contig7283.16150.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7283 862..1963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7283.16150.1

>prot_L-elsbetiae_contig7283.16150.1 ID=prot_L-elsbetiae_contig7283.16150.1|Name=mRNA_L-elsbetiae_contig7283.16150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MVFDAIKTLKERSGSSIQAIKKSITATNPSLNFTPHQMRSALKKGVESGK
FIKVKGSYKLSPEAKKPAPKPKKKVVKKVVKKVKKKVVKKIVAKKKPAAK
KASTPKKASTPKKKAAPKKAAPKKTAAIKKTVTKKPATKKAASTPKKKAA
PKKKTAKKA*
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mRNA from alignment at L-elsbetiae_contig7283:862..1963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7283.16150.1 ID=mRNA_L-elsbetiae_contig7283.16150.1|Name=mRNA_L-elsbetiae_contig7283.16150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1102bp|location=Sequence derived from alignment at L-elsbetiae_contig7283:862..1963+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTATTTGATGCCATCAAGACCCTCAAGGAGAGGAGTGGGTCGTCCAT
CCAGGCCATCAAGAAGAGCATCACCGCCACCAATCCGTCCCTGAACTTCA
CGCCGCACCAGATGCGCAGTGCCCTCAAGAAGGGGGTCGAGTCCGGTAAA
TTCATCAAGGTGAGACGTACTCGCTACTGTAGATCCTCTGCCAAACCTGA
AGGCGTGTGGCATGCGGTTTTTTATGCACACGCAGAAATAAAGTAGTTTC
GTGTCGGAACCCCGAGGCCGCCCTTGAATTCAAACGGTCAAATTGCTGTG
AGATTTTCTGTTTACTGTTCTCTCCAAATGGCCAACGGCTGATGTGCATC
TTGCAGTGGAGGCTACACCTCGTCTCCACGATTACGTCCAGCCTGTGTAC
ATCCACCTCACATTGCAGTTCAGCACGCATGCATTATCATCATGATGCAC
AAGAGGCTGACACTGGCCCAGAGAACGTCTGCACATAAGCACTCACTACT
ACTGTCTGTGCACTAGCTGCTGGCTTGCACGTAAACATTATTTCGGGACC
TCACATCAGCAGTGTCCAACCGCCTGTCTTACCCCCCCCCCCCCCCCCCC
CCCCCCCCCCTCTTCTTCCACCAGGAAAGGGGGCCCCCCACACAGCCCCC
CCCCGCCCACAGCCCCCCCCCNNNNNNNNNNGGCTTCCACGTAAACATTT
TTTCGGGCCCCCCCCTACACAGTGTCCAACCGCCGGCCCTTCCCCCCCCC
CCCCCCTATTGACGACGTTTCTATACACCAGGTGAAGGGCTCCTACAAGC
TCAGCCCCGAGGCCAAGAAGCCCGCTCCCAAGCCCAAGAAGAAGGTTGTG
AAGAAGGTCGTGAAAAAGGTGAAGAAGAAGGTCGTCAAGAAGATCGTGGC
TAAGAAGAAGCCCGCTGCTAAGAAGGCTTCCACCCCTAAGAAGGCGTCCA
CCCCTAAGAAGAAGGCTGCCCCTAAGAAGGCCGCCCCCAAGAAGACTGCC
GCCATCAAGAAGACAGTCACCAAGAAGCCCGCCACCAAGAAAGCGGCGTC
CACCCCTAAGAAGAAGGCCGCTCCCAAGAAGAAGACTGCCAAGAAGGCCT
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7283:862..1963+

>mRNA_L-elsbetiae_contig7283.16150.1 ID=mRNA_L-elsbetiae_contig7283.16150.1|Name=mRNA_L-elsbetiae_contig7283.16150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig7283:862..1963+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTATTTGATGCCATCAAGACCCTCAAGGAGAGGAGTGGGTCGTCCAT
CCAGGCCATCAAGAAGAGCATCACCGCCACCAATCCGTCCCTGAACTTCA
CGCCGCACCAGATGCGCAGTGCCCTCAAGAAGGGGGTCGAGTCCGGTAAA
TTCATCAAGATGGTATTTGATGCCATCAAGACCCTCAAGGAGAGGAGTGG
GTCGTCCATCCAGGCCATCAAGAAGAGCATCACCGCCACCAATCCGTCCC
TGAACTTCACGCCGCACCAGATGCGCAGTGCCCTCAAGAAGGGGGTCGAG
TCCGGTAAATTCATCAAGGTGAAGGGCTCCTACAAGCTCAGCCCCGAGGC
CAAGAAGCCCGCTCCCAAGCCCAAGAAGAAGGTTGTGAAGAAGGTCGTGA
AAAAGGTGAAGAAGAAGGTCGTCAAGAAGATCGTGGCTAAGAAGAAGCCC
GCTGCTAAGAAGGCTTCCACCCCTAAGAAGGCGTCCACCCCTAAGAAGAA
GGCTGCCCCTAAGAAGGCCGCCCCCAAGAAGACTGCCGCCATCAAGAAGA
CAGTCACCAAGAAGCCCGCCACCAAGAAAGCGGCGTCCACCCCTAAGAAG
AAGGCCGCTCCCAAGAAGAAGACTGCCAAGAAGGCCTAAGTGAAGGGCTC
CTACAAGCTCAGCCCCGAGGCCAAGAAGCCCGCTCCCAAGCCCAAGAAGA
AGGTTGTGAAGAAGGTCGTGAAAAAGGTGAAGAAGAAGGTCGTCAAGAAG
ATCGTGGCTAAGAAGAAGCCCGCTGCTAAGAAGGCTTCCACCCCTAAGAA
GGCGTCCACCCCTAAGAAGAAGGCTGCCCCTAAGAAGGCCGCCCCCAAGA
AGACTGCCGCCATCAAGAAGACAGTCACCAAGAAGCCCGCCACCAAGAAA
GCGGCGTCCACCCCTAAGAAGAAGGCCGCTCCCAAGAAGAAGACTGCCAA
GAAGGCCTAA
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